Eagr007198.1
Basic Information
- Insect
- Eledona agricola
- Gene Symbol
- -
- Assembly
- GCA_964023215.1
- Location
- OZ026855.1:33147099-33149535[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.1 1e+02 4.0 1.0 2 23 201 223 200 223 0.96 2 10 3.9e-05 0.0035 18.0 0.4 1 23 259 282 259 282 0.94 3 10 0.45 41 5.2 0.3 1 11 352 362 352 365 0.88 4 10 1.7 1.5e+02 3.5 0.9 2 23 383 405 382 405 0.78 5 10 6.9e-05 0.0063 17.2 0.2 1 23 411 433 411 433 0.96 6 10 4.7e-06 0.00043 20.9 1.4 2 23 447 469 447 469 0.95 7 10 0.00086 0.079 13.8 3.0 1 23 475 497 475 497 0.97 8 10 0.00037 0.034 14.9 4.7 1 23 503 525 503 525 0.98 9 10 0.052 4.8 8.2 1.2 1 23 531 554 531 554 0.97 10 10 0.16 15 6.6 5.1 1 23 561 583 561 583 0.98
Sequence Information
- Coding Sequence
- ATGAATGACGAAGACGAAGAAGCAACatacttgaaactttttaacGAGAGCTCCCACAATTTCCTGCTGCACAGTACGGAAGATGGCCTTAACGACACATTTCCAGTGGAATCAATTTTTACAGAAATCAACTCGGATTGGCCGTCTGAAGGTTTTCCAATTCTTCTGAGTGGTCCTCTAGTCGCTGAAGACAATGTTGAGAAAGACATAACGAATGCACACATTCAGTTCATGGGCAAAGACGATGAATGTGAGCCCCAAACTAATAATGCAGCCCTGAATGGAACCCTCACATTTTACTCAGACATCCCAAACAATAGTTTGATTGTATCAAACGATTTGCTTGTTAAACTACAAGAAGCTGAGTCAAATGGCTCAAGCGACTCTCCAATAACGCATGTAATTAATGGCGATACGTACTCGGTTACATACTCACAAGGCAACCAAGAAGACGCCACAGAAGTAAATGAAAATGTTGAAGTGATACAGCTGTTGGATATTGATGGAAGTGTGACTACAATCGACAAGAATCTCTTAACTGACACTGATCCAAAGAAAACGGTCATCGTGAGTGAGTTTTATTCTCAAGTCCAGGCTAACAAGTGCAAGTTGTGTGACTTCTTGTGCGAGAGTGTTGAGGATATGGTGACTCACATTAACGTCAAACACTCAACTGAAATTCAGAACGGCAAAAAGAGTTGTGAAAATCCGTTTGTCGGAAACAAATTGAAGAGCATTCTCAATGTAAACCAGAACAAGGAGAAATATTTGCTGTATTTGTGCAGCAATTGCGGAAGCGGATTTTCGAACAAGGAGGATCTAAAGCAGCATATGATAAACCAACATAAAATGGTGGAAGTAACAAGTGAAGCAGCTACTCCCGCTGAACCCGCGCCGATTCAACTCACAAAATCTCTTTCTACAAGTCTTTTGAAAGCACAGAAAACCAGATCCAAAGTGAAATGTTCGATAAAGGGTTGCCCCCTAGGATTCGACAAAGAGGAGATGCGCAAAAAACACGAAGACTGCCACGTAGACCAACACAAGAAGCGATTCATGTGTCCTGTGTGTAAAACAAAGTTTTCGCTTTGGAGGATTTGCTGCGTTCACTTGTGGAAAAGCCATCAAATCGATGTGGGCCTCAAGACTTGTCCCATTTGCAACAAATTCAAATCGTACAGCCCAGTCTGTGTTATGAACCACATGGCTATCCACAAGGAAGAACGTCCGTTCGTTTGCAGTGCTTGCGGAAAGGATTTCAAGCAATTGAACCAACTGCGAAACCACGCCATCGTGCACAAAGACCCATCTCAATTACCTGACtcttatttgagcagacagtgCAACATTTGCGACCGATTTTTTGCCAACTCAAAGTCATTGAAGAAGCATATTAAGTTCGTACACGACAAATTTAAACCCTTCATTTGTAACATTTGCGGACATCAAACGGCAAGGAAGGAAATGTTACAGTTGCATCATCGTCAACACACTGGAGATAAACCGTTTCAATGTTCCTATTGCGACTACAAAACTGCAGACAAGAACTGTTTACAACGACACACCATGCGCCATTTTGGAGTGGCGAAATACTCATGTCAGTATTGCAGCTATCAGTCAATCCAAGCGActgttttcaaaaatcacaTAATGAGCAAGCACCCAGGAAAAGAAGGAACTTATTCGTGCAAACTTTGTCGCTACTCCACTATAAACTGTCGCTCTTACATGTCGCACCTCAAGAACCACGAACTGGAGCAAAAGAAAAAAGCGAAGGGAAAAATCGAAAAAGGGGCGAATGTTGAAGATAGCGAATCGAAATCCAGCGACGAGACCCACAACTTTCTCAACCCGGAGCAGCTGGAGGAGGCAGTGGACACGGGGGGAATCACGATTCCCGCAGGTTTTGACTTGCAGTTATCGACCGATCCCGCGACCATTATTTAG
- Protein Sequence
- MNDEDEEATYLKLFNESSHNFLLHSTEDGLNDTFPVESIFTEINSDWPSEGFPILLSGPLVAEDNVEKDITNAHIQFMGKDDECEPQTNNAALNGTLTFYSDIPNNSLIVSNDLLVKLQEAESNGSSDSPITHVINGDTYSVTYSQGNQEDATEVNENVEVIQLLDIDGSVTTIDKNLLTDTDPKKTVIVSEFYSQVQANKCKLCDFLCESVEDMVTHINVKHSTEIQNGKKSCENPFVGNKLKSILNVNQNKEKYLLYLCSNCGSGFSNKEDLKQHMINQHKMVEVTSEAATPAEPAPIQLTKSLSTSLLKAQKTRSKVKCSIKGCPLGFDKEEMRKKHEDCHVDQHKKRFMCPVCKTKFSLWRICCVHLWKSHQIDVGLKTCPICNKFKSYSPVCVMNHMAIHKEERPFVCSACGKDFKQLNQLRNHAIVHKDPSQLPDSYLSRQCNICDRFFANSKSLKKHIKFVHDKFKPFICNICGHQTARKEMLQLHHRQHTGDKPFQCSYCDYKTADKNCLQRHTMRHFGVAKYSCQYCSYQSIQATVFKNHIMSKHPGKEGTYSCKLCRYSTINCRSYMSHLKNHELEQKKKAKGKIEKGANVEDSESKSSDETHNFLNPEQLEEAVDTGGITIPAGFDLQLSTDPATII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -