Eagr016319.1
Basic Information
- Insect
- Eledona agricola
- Gene Symbol
- -
- Assembly
- GCA_964023215.1
- Location
- OZ026860.1:9283122-9284528[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00086 0.078 13.8 0.4 2 20 140 158 139 160 0.93 2 10 9e-06 0.00082 20.0 1.8 1 23 168 191 168 191 0.94 3 10 0.018 1.7 9.6 2.7 1 19 217 235 217 238 0.95 4 10 0.00069 0.063 14.1 0.2 2 23 241 261 240 261 0.97 5 10 0.012 1.1 10.2 0.2 3 23 268 289 266 289 0.92 6 10 1.6e-05 0.0015 19.2 1.9 1 23 294 316 294 316 0.98 7 10 0.00016 0.015 16.1 1.9 1 23 322 345 322 345 0.97 8 10 8e-06 0.00073 20.2 2.9 1 23 351 373 351 373 0.98 9 10 1.6e-05 0.0014 19.3 0.5 1 23 379 402 379 402 0.98 10 10 2e-05 0.0018 19.0 0.6 2 23 411 432 410 432 0.96
Sequence Information
- Coding Sequence
- ATGAATAAACGAATTTGTAGGTTATGTTTAGCTCATCCCTCTATTGGTATTTCCTTGTTGGAGAAAAACCTGTCTGAAATGCTGGAAGCCCTAACATCGATTAAGGTTGACTCCAGTGAAGAGTTATCGACAATCACTTGCCACAAGTGTTTGTTAAACATGAAGCTAGCATTTAACATCCAACAGAACATGTTAAAAGCGGACGAAAAGCTGCGCGAGTTGTCTTTGTTGAATAATGTCGAAGTGAAGCTGGAGGTACCAGATGCGGATTTCGACCAAACACCACTTCAAGAAGCAACCAGCAACGACTCAGATGAAGTGTTAAAACTGTGTTGTTCGAGTTGTGTGATTTGTGGCCTCACTCTCGAAGGCACTCTCCTAGCCAAACACGTCCAAGAACACTTTAGTGACCAGCAAATGTGTGACTCTTGCAACAAATcgtttagtaatttaaatgaatacaaAACGCACCTGTCTGCAAAGAAGTGTTCACTGACCGATCATAAGTGTCCCAAGTGCGGAGTCACCTTTCGTTATAAAAGCTTGTACAACCTGCACATGGATCAAGCACATTCCGTTTGTGATCTCAGAACCAGAGCGGTGCAGTTATTCTTACAGAAGAAGTGTTCGTCAAAGCCGCAAGGTCCTTTCACTTGCGAGGTGTGTCAGAAGCAGTTTCAGTTCAAGAGGCAATATCAAGCGCACTCGCACCAAAAAAAGAAGTGCCCAATTTGCGATGCGGAAATAACTAAAAGTAACTTAATTAAGCACATTAAGAACCACTCATCTGGGCCACAGATTTGTGAAATTTGCGGGGCGAGTTTGAGGAGTTTGGAGAGTTTGAGGGGGCATCTAGCGCACACTCACAGCACTTCCAGTTACACTTGTGAGGAGTGCgggagggtgtttagaaaacgcTACGCTTACTTGTTGCATAAAAAGAAGCACTCAGGTGAAAAGTCGCACGTGTGTGACACCTGCGGCAAAGCATTCCTCACTTTCTTCTACCTGAACAAGCATATCAAAACGGCACACTTGAAGCTGCGTCCCTATATTTGTGAATACTGCCATCGTGGGTTTTCGAGCAAGTTTGCACTAAAAACTCATGTTAGACAGCACACCAATGAGACGCCGTACAAGTGCGAAATTTGTGGTGACGGTTTTAGGCAGAATGTGTCGTTGAGGGCACATCGAAAGTCCAAACATAATATTATTGAACCAAAAACGTGCGCCTGTACGGTTTGTGGAAAAGAGTTCAGTTCCAGTCAAGCCATTATCAGTCACATGCGGCTACATTAA
- Protein Sequence
- MNKRICRLCLAHPSIGISLLEKNLSEMLEALTSIKVDSSEELSTITCHKCLLNMKLAFNIQQNMLKADEKLRELSLLNNVEVKLEVPDADFDQTPLQEATSNDSDEVLKLCCSSCVICGLTLEGTLLAKHVQEHFSDQQMCDSCNKSFSNLNEYKTHLSAKKCSLTDHKCPKCGVTFRYKSLYNLHMDQAHSVCDLRTRAVQLFLQKKCSSKPQGPFTCEVCQKQFQFKRQYQAHSHQKKKCPICDAEITKSNLIKHIKNHSSGPQICEICGASLRSLESLRGHLAHTHSTSSYTCEECGRVFRKRYAYLLHKKKHSGEKSHVCDTCGKAFLTFFYLNKHIKTAHLKLRPYICEYCHRGFSSKFALKTHVRQHTNETPYKCEICGDGFRQNVSLRAHRKSKHNIIEPKTCACTVCGKEFSSSQAIISHMRLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -