Eagr012778.1
Basic Information
- Insect
- Eledona agricola
- Gene Symbol
- Zfpm1
- Assembly
- GCA_964023215.1
- Location
- OZ026858.1:21293088-21295922[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.2 7.4e+02 1.3 0.1 2 23 7 28 6 28 0.88 2 15 0.22 20 6.2 1.5 1 23 464 487 464 487 0.78 3 15 1.2 1.1e+02 3.9 0.1 2 23 565 587 564 587 0.91 4 15 0.075 6.8 7.7 1.5 1 23 594 616 594 616 0.97 5 15 4.4e-06 0.0004 21.0 1.6 2 23 619 640 618 640 0.97 6 15 0.0019 0.17 12.7 1.1 1 23 646 668 646 668 0.98 7 15 0.00015 0.014 16.1 6.2 2 23 675 696 674 697 0.95 8 15 1.2 1.1e+02 3.9 2.1 6 23 711 728 709 728 0.95 9 15 1e-05 0.00091 19.9 3.6 3 23 735 756 734 756 0.97 10 15 0.02 1.8 9.5 0.0 2 23 772 792 771 792 0.96 11 15 0.00027 0.025 15.4 1.5 1 20 798 817 798 820 0.92 12 15 0.00048 0.043 14.6 0.9 1 23 828 850 828 850 0.99 13 15 0.00028 0.025 15.3 6.5 1 23 856 878 856 878 0.98 14 15 9.6e-07 8.7e-05 23.1 4.0 1 23 884 906 884 906 0.98 15 15 0.0011 0.099 13.5 7.0 1 23 912 934 912 935 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCAAATAACGTAACTTGTCCCGTTTGTACGCTCTACCTCCGGCCGGGCATCACCCTGAAAAGCCACTTGGGCAGTCACCCCAAGCAGAAGGTGATCGAAGCTTTGGTCCGGCTGGCGGAATGCGGCGACCTCGACAAAATCGAGAGCGCGCCTCTGCAGAGCGACGCCGGTGGCTCCATCAGCTCGCAAGTGAACACCGCCATCGTCAACCAAACCTGGAACCAAGGCGGAATGGTAAATATGCCTCCGAACGTTCCTCCGCTCCAAGGCAACCACGTCTTCATCTACCAACAAAGCATGAGTAGCACGACGACGCCGCAACCGAACGTTCTAAACGTCACTCCGCCGCCCCATCAATACGTCATACCCACGGTCTTGAACCAGCAAATGATGCCCTACATTTACCAGCAGCAAGTTTTCATGTCGAGCGGCTCCTGCATGTCCCCCATGCGCACGCTTCCCTTCGAGTTGCCTCCGCCGCCCCAAATCACAGATATTAACGAGTGCACCAACGAGCACTCATCCAGCGAGAGCGAGGCGGAAGCTCCGCAAAAGTCCGAAGCGGACGACGCGGACAACTGCGAGGAGCATGTCGTCAAGAAAGAGAACTGTATGTCGTTCGAGGAGCACGAGATTTTGGGTTCGCCGATTTCGATAACCGGCTCCGTCGACATGGACTTGAACAAAGCGTGTCAGACGCAGACTCTCAACAACTATTCGCCGGCGTCGAACGCGCCAGACGACGACGTCGCGGACGAGGCGCCGAAGCAAGCCTCGTCCGAGTTTTATTTCATGAACGAGAACGTTAACGCGGCCGCGTACGGCAACTTCGAAGCGAACCCGATTTACGCCGCCTCTAATGTCCTCCCGAACGGCGACCACTTGGATTTCGTGGACATGGACGGCATGCACATGGTGATGAACGAAATGAACGACTTCTCCGCCAATCAGATCATCTCGCAGGTGGAGAATTTCGAGGGCAGCGCGCCCGATAGACCCGGGGTTTTGATGACGATCGGCGGGATGATTGACTCGTCGAAGGACGAGTTCCTGGACCAGCGCGACGCCGAAGAGAGCATGTCGCGCGAAAGCTCCCATGTTAACATCCGCGCCGACGAGCGAATGCCGCCTCGAGGGGAGTTGTCGGGGCAGGAGAGCATTGGGGGGTCGAGCGACATCACCTGGCACCGGGTGCAGTACAACGACGCCAGTTCGGGGATGTCCACGTCGTACGACCTCCTCGCCAGAGAGAACTGGGAGCAGTCCGACGGCTCCGACGTCGAAGTGCCCCCGCTGCAGAGTCGAATCCCGCCGCACATCGTCTATCCAGAAGAGGACAACGACACCCCGACTATTGTCAGCTTCACCGGACCTCCGCTCAATTTCAAATGTCCGCTCTGCGACGAGGCGTTCAGTTGTCTGCGCGAGCGCAAGGACCACGAGGCCACCAAACACCCGGAGAAGGCGCGAAAAATCAACCGGATCGGCACCGAAATCGGGAAGAAGAAAGTCAAGAAGTTGGTTGTGAAACCGAAGTCGTCGACCACCGAAAACAATTTCGACAACGTGTTCACGAACAAGCTCAAGACGGAGAATATCGTCGAGGTGGACAGCACCCCCGTGGAGCTGGAGCAGCCAATGGTGCCGGTGAAAACCGACGATCCTCTGGCGATCGAACTCAAAACGGTGTGTCCCATGTGCGACACCGTCTTGCTCAACGTGAGAGAGCTGAAAGAGCACAAGTTGAGGGTGCACAACGTTAAACCCACGAGGCACAAGTGCATGACTTGCGGGGACGTGTTCCCGAACGACTATAAGTTTTCCGAGCACTTGCGTCTCCATCCTTTGGAGTGCAAAATGTGCGGACGACTTTTCTATCGGAGGCAGAACCTGCAACTGCACATGCGCCGTCACTTGGGTATTAAGCCGTACAAGTGCGACGTTTGCGAGAAGAGCTTCCTCACGAAGCAGAAGCTGGACGAGCACAGAAACATCCACACGGGCGAAGCCCCGATTAAATGCACTCAGTGCAGTGAGACGTTCAGGCGGCATTCGAACTTGGTGCAGCACCGCAACCGCCACCACCTGAACGTCAAGAAGAAAGTGAAAGATTATATATGCTTCTGCAAGGAGGTGTTCCATTCCAAAAAGAAGCTGGCGTGGCACAAGGAGATCCACGACGCCAAGCCGAAAGCGTGCGCCCATTGCAACGAGAAGTTCATTCACAATTCGAGTTTGACGCGTCACATGCGCCGCGCCCACAACGACCGCTTCCTCCCTAAAGACCACAAAAACGCCGACAACGTCGTGTGTCCGATTTGCAAGGGCGTGTACTTGAAGTCGTCGCTGGAGGTGCACATTCGCAACCACAGCGGCCAGAGACCCTACTCGTGTCTCATCTGCAAGAAGGACTTTACCACCAAGTGGAACCTCAAGTTGCACAAGTGGACGCACGCGTCGCGCGTCTCCAAACCGTTCAAGTGCGACCAGTGCAAGAGCGCCTTCATAAGGGAGACCGACTACATCTCCCACATGAACTCGCACAAGAGCATCCGACCTTACACGTGCAACCATTGCGGCGCCAAGTTCATCCGCAAGTACAACTGCCAACGGCACATGAAGGAGCACGAGAACGAAAAGATGTTCACGTGTAAGGTGTGCGGCAAGTCTTTCCATCGCTCCTACTATCTCAAAGACCACTTGCGCATACACAGCGGCTTAAGACCTTATTCCTGTCACATTTGCGGGAAGACGTCCACCACCAAGTCGAACCACAACAAGCACGTGCAGATACATCACGCCCGCGAGCCGATCAGTACCGAGAATTGA
- Protein Sequence
- MEANNVTCPVCTLYLRPGITLKSHLGSHPKQKVIEALVRLAECGDLDKIESAPLQSDAGGSISSQVNTAIVNQTWNQGGMVNMPPNVPPLQGNHVFIYQQSMSSTTTPQPNVLNVTPPPHQYVIPTVLNQQMMPYIYQQQVFMSSGSCMSPMRTLPFELPPPPQITDINECTNEHSSSESEAEAPQKSEADDADNCEEHVVKKENCMSFEEHEILGSPISITGSVDMDLNKACQTQTLNNYSPASNAPDDDVADEAPKQASSEFYFMNENVNAAAYGNFEANPIYAASNVLPNGDHLDFVDMDGMHMVMNEMNDFSANQIISQVENFEGSAPDRPGVLMTIGGMIDSSKDEFLDQRDAEESMSRESSHVNIRADERMPPRGELSGQESIGGSSDITWHRVQYNDASSGMSTSYDLLARENWEQSDGSDVEVPPLQSRIPPHIVYPEEDNDTPTIVSFTGPPLNFKCPLCDEAFSCLRERKDHEATKHPEKARKINRIGTEIGKKKVKKLVVKPKSSTTENNFDNVFTNKLKTENIVEVDSTPVELEQPMVPVKTDDPLAIELKTVCPMCDTVLLNVRELKEHKLRVHNVKPTRHKCMTCGDVFPNDYKFSEHLRLHPLECKMCGRLFYRRQNLQLHMRRHLGIKPYKCDVCEKSFLTKQKLDEHRNIHTGEAPIKCTQCSETFRRHSNLVQHRNRHHLNVKKKVKDYICFCKEVFHSKKKLAWHKEIHDAKPKACAHCNEKFIHNSSLTRHMRRAHNDRFLPKDHKNADNVVCPICKGVYLKSSLEVHIRNHSGQRPYSCLICKKDFTTKWNLKLHKWTHASRVSKPFKCDQCKSAFIRETDYISHMNSHKSIRPYTCNHCGAKFIRKYNCQRHMKEHENEKMFTCKVCGKSFHRSYYLKDHLRIHSGLRPYSCHICGKTSTTKSNHNKHVQIHHAREPISTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -