Basic Information

Insect: Eledona agricola
Gene Symbol: RREB1
Assembly: GCA_964023215.1
Location: OZ026856.1:19918731-19928370[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.7e-05 0.0061 17.3 1.2 1 23 77 99 77 99 0.98

2 16 0.00038 0.035 14.9 0.5 1 23 111 133 111 133 0.98

3 16 0.00018 0.016 16.0 6.2 1 23 139 161 139 161 0.98

4 16 0.41 37 5.4 0.1 1 21 220 241 220 244 0.75

5 16 0.031 2.9 8.9 0.9 2 23 250 272 250 272 0.95

6 16 0.036 3.3 8.7 0.5 1 20 317 336 317 338 0.94

7 16 0.17 16 6.5 0.1 1 23 476 498 476 498 0.96

8 16 6.9e-06 0.00063 20.4 0.8 1 23 507 529 507 529 0.99

9 16 0.0007 0.064 14.1 3.1 1 23 535 558 535 558 0.97

10 16 0.00042 0.038 14.8 3.0 1 23 938 961 938 961 0.97

11 16 0.00047 0.043 14.6 0.5 2 23 1173 1194 1172 1194 0.97

12 16 0.11 9.7 7.2 6.3 1 23 1200 1223 1200 1223 0.97

13 16 0.011 0.96 10.4 1.2 1 20 1251 1271 1251 1272 0.95

14 16 0.043 3.9 8.4 0.5 1 23 1327 1350 1327 1350 0.95

15 16 0.014 1.3 10.0 0.4 3 23 1397 1417 1395 1417 0.93

16 16 0.0064 0.58 11.1 5.9 1 23 1423 1445 1423 1445 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.7e-05	0.0061	17.3	1.2	1	23	77	99	77	99	0.98
2	16	0.00038	0.035	14.9	0.5	1	23	111	133	111	133	0.98
3	16	0.00018	0.016	16.0	6.2	1	23	139	161	139	161	0.98
4	16	0.41	37	5.4	0.1	1	21	220	241	220	244	0.75
5	16	0.031	2.9	8.9	0.9	2	23	250	272	250	272	0.95
6	16	0.036	3.3	8.7	0.5	1	20	317	336	317	338	0.94
7	16	0.17	16	6.5	0.1	1	23	476	498	476	498	0.96
8	16	6.9e-06	0.00063	20.4	0.8	1	23	507	529	507	529	0.99
9	16	0.0007	0.064	14.1	3.1	1	23	535	558	535	558	0.97
10	16	0.00042	0.038	14.8	3.0	1	23	938	961	938	961	0.97
11	16	0.00047	0.043	14.6	0.5	2	23	1173	1194	1172	1194	0.97
12	16	0.11	9.7	7.2	6.3	1	23	1200	1223	1200	1223	0.97
13	16	0.011	0.96	10.4	1.2	1	20	1251	1271	1251	1272	0.95
14	16	0.043	3.9	8.4	0.5	1	23	1327	1350	1327	1350	0.95
15	16	0.014	1.3	10.0	0.4	3	23	1397	1417	1395	1417	0.93
16	16	0.0064	0.58	11.1	5.9	1	23	1423	1445	1423	1445	0.98

Sequence Information

Coding Sequence: ATGCAAGGGGTTGTCTTCATGCCGCAGAATCCACAGCAGGGCTCGCCGCCTCCAAACAACCAAATAGGTACCGAGATAACAATGGAGGTGAATTCTGTCTCCACCAAAGAACTCCCGACAAACCAAAGCACTCAAAGCGACTCCGGCATCTTTTCCGCCACGAACACTTCAAACATGGAACATTGTGATACAGACAATCGGAGCGATTGCAGTTCTCCCGAACGTAAATACATGTGCCCAATCTGCGAGAGAATGCTGACTTCGCAGCACGAATTCACCCTTCACATCCGATCTCACAATAACGAGTCTGAAACGCAGGACGACAAAGGATTCACCTGCAGGATCTGCTTCAAAGTACTGAGCTCAAGCTCAAGCTTGGACCGCCATGTGTTGGTGCATAGCGGCGAAAGACCGTTCCACTGTCGGTATTGCGGCGACACGTTTACCACAAATGGAAACATGCACCGACACATGAGAACCCACAACAAGAATGAAAACTACGAATCTGATGGAAGTTCGGACAGCAACGTCAGCACCAGTTCGAAAAGCACCGAGTTCAACAACAATAAAATCGAATCGAAGAAGAGGAAACTTGAGTCGGCTGATCAGACTAACAAGCGGGCGGAGAACTCCAGCGACGGCGAAGGGCAACAATTTTACAAGTGCCCGGTTTGTGACCGGACCGATTTCGATTCGATTGTCGCTTTGGAAACGCACTTGGAGGACAATCATCCCGACTATCCCGCAAAGTGCAATCAGTGCAATCAACTCTTCCAAAACAACAAATTGCTGATGATCCATCGCAGCATCGTCCACAGCAATACCAAGAAGCACACAGTTACGGGATTCAAAGACTTGACGTTCGTCGATTTCTCCAGCGAAAAATTTCCACATATTGCCCGCTACGAATGCGAGAAAAATGTCCACACTGCTTCCGACGGCTTGACCTTCCAATGCCAGAACTGCCCGCGAGCATTTCCATGCAACAGCTCTTTGGAGATCCATGAAAAAGACTGCACTCTCAATAATTACAACAGCGGCTTGGACTTGAGCAGGTCAACTCAGCTCTCCGAAACGGATATCCGAAGAAGTGAATTCTTCTCAAGACTCAATCTTCAAGATAATTCTCCCGAGAAGTTTATTCCACCGCCACAAATCAACGACACTTCTACCAAACTGCGACAGCAGCTTCTGGCAAAAGTGATGACTAACGATTCCAGTAAGGATCTAGCTGATATTCAGTCGATAATTTCCATGACCACGAACGGTAGTCTTCTTCGACAACTCCAGGCTAAAAGCGACGTAACTCTAGGAAACCACAAAAACAGTTTCGAACAGTCACAGGAGTGTAGTAGATCGGAACAGGAAGAAGAATCTCAAGACTTGTTTGCTGTCGAATTTAGAAAGATGAAACTAAGGGGCGAGTTTCCTTGCCGTTTGTGTACTGCAATTTTTCCGAATTTAAGAGCGTTAAAAGGTCACAACAGAGCTCATCTTAACGGCAACAACAATGGAATGTACCGATGTAACATGTGTCCTCATTCCTCCATCGATAAGGCGGCTCTCATACGACACATGCGGACACACAACGGAGATAGGCCCTACGAATGCTCTCTTTGTAATTATGCATTTACCACGAAAGCCAACTGCGAAAGACATTTGCGAAATAGACATGCCAAAACCACGAGAGAGGAGGTGAAGAAAGCAATAATTTATCATCCGTCGGAAGATCCCACCAACGAGGATCTAAATAAGCTAACCGCAAGAGAAGAAACTCGAAAGAGTAACAACGAACTGAGTGTAGAGAAACTGTGCGTTACTCCGAAATTATCAGAGTTGAGAAACATCCTGCCAGAATCGGCCAAAGCGGAAGTGACTCCTCTAATTCCCAAATTATTGAAAGAGACTCTAAACGAGCCGCTCTCTAAGGAACCGTCGAACTTATTCTCGAATATCGGTGAACTAATCCGCAGTGAGAATTTAAAATCTCTAAAAGATCACAGACTTCAAAACGGTCAGCTCTCTCCATACTTACCTCCGGCGTACAATTTCTCCCCAAAATCGTCCAACGTGTCCACCCCGCACAATCTTTCTTCCAAAATCCACGTAAAAAACTTGGAGGATTTGAAAGAAACACATTTTGAGCCTCACTCGGATCCAGAATATGAAGACGCCGAGGACGAACCCATGAATCTAGTCTTGGACTTGAGTAAAAAGAAAACTCAAGAGGAGAAAAAGCAAAATACTGAAACCTGTCCTCAGGATTTGTCCAAGAAAAGTCCACCGAACGCATTGTCAATGAGAGAATTGTTCGCTCAGCAACTTCTGAAAGGTCCTGCGGATCCGGCCGCTTGGTATGCTACACTGTACAGAAACACCTTTCATGGATTCACTGGTTGGCCGGGATTACCTCTCAATCCGTTGTTGTTTCCTTCTCTCCCGGCTCCTCTCCTTCCTCAGGATGCGCAAGACATGAAAGAACGTCTTCAAAGATATCAACTGTGCGGTGGTTCGATGATCACAGATAACTTCACAAAACATCTCAAAAATTTCCAAGCTCCTCCGAATGCGATCTTCAACAACTTCAAAATTGGCGAGATGTCATCTGACAGCGACCTCAAACAGTCCGAAGAAATGAAACCTCTGAGTTTGAGCATTGACCCAACATTTGGAGACACATACAAATTGCACAGTCCAATTCCACCGACCAAATCTGATTTGACGCAATCACCGAATTCCGTTAAGATGGTCATAAAGAACGGAGTCCTGATGCCAAAGCAGAAGCAGAGACGTTACAGAACCGAACGACCCTTCACGTGCGAACACTGTTCAGCCAGATTTACGCTGCGTTCCAATATGGAAAGACACATCAAACAGCAACACCCCCAGTTCTGGTCACAGCGTCAAAGAGGTCATATCAGTACGCCTGGGagaaaaagtcaaatgaaaacgGGTTACTGTGATCTGAGCATACCAAACTACGAATTGCCAAAGACGCAAGAATTTGACGAAACCAAAGAACAGATCGACGATAAAGTTAAGTTCGCCATCTTGGCTCAGCATCTGAGAGTCAACAAAGAAATCAAGAAGGAAGAAGATGACGACTGCGCTCTTGTCATCGACGAAAATACAGAAAAAAGCGAAGTCAAGACTGAAGACAACCAAAGACACTACGAAGGCGGATTTGAAAAAAGCCGCATTCTTGAGGAGAAACTTAAAGAACTTCATGCAAAACACTTTAAGCCTGAAAAGCCTAAAACCGAAGATAACCAGGACTTGGTTCCGGTTTCCAGACTCTTGGACAATGCTTCGCAGCAACAATTCAAAGAATATTTTAAGCGCGAGAGTGAGGAGCACGAGGTGGGAGGCGCCAGCGAAGAAGACGAAGAAGGGCTCGTCGCCAGCGGAAGCACGAGTGAAGGAAACATTTCTGGGACGGACGAAAACAAGTCCGAATCGGAGGCCGCAGCGCCCGCCAAAAAGAAATCTGCTTATTCTATGGCGCCGAATCGGGTGAGCTGTCCCTTCTGCAGCCGCAAATTTCCGTGGAGCTCGTCTCTACGTCGTCACATTTTAACTCACACCGGCCAGAAGCCATTCAAGTGCAGCCACTGCCCTTTGCTCTTCACGACCAAGTCGAACTGTGATCGCCACTTGTTGAGGAAGCACGGAAACAACGCCACCACTATTTCCAACGACGTCGTCAACAACAACACCAACTACTTAATGAGGAACGTCCCGGAGCGACCGTTCAAGTGTTCCAATTGTCCCAGCAGCACTTTTTCCACATACTCCAATCTCAAGAAGCACATCAGCTGCAAGCACTCGACCAACGCTCAAGGCGACGACATCAAAGCGCAGGGCTACGAAGCCGGCAGCTCGGAAGACGAGAAGCTGCCATCGAGCGACAGCAAAACCGACTGGGACGTTCCCGTTAAGACGGAGGTGCAAAACGCGGTCCAGAACTCGGACCTTCCCTTCAAATGTCACTTGTGTGACGGTTCCTTCGGCGACCGTCAAGACGCGCTGGAGCACATCAAAGCGAAACATTTCGCCGAATACGACTTGCTAATGTCGAAGAACGCGCTCGACAGCAACGCCACGACTCCCGAAGACGGGGGACACCACGACGACGAAGAGAACGACATGAGGGGCAAATTTCCAGATTACTCGAACCGGAAGGTGATCTGTGCGTTTTGCATGCGCAGATTTTGGTCGGCCGAAGACTTGAGGAGGCACATGCGCACCCACACCGGGGAAAGACCGTTCAGTTGTGACATCTGCCGAAGGAGGTTCACGCTGAAGCACAGCATGTTGCGCCATCGGAAGAAGCACAACGTGAACTTCGACTGCGAACCTATGAACAGTGACGAGGATAACAACGCCAATTTCGAGAAGTACGCCAAGAGCGAGAACAACAACATGCACAAGGAGAAAACGGACGAATCGGACGGGAACGAAGGAGGCGATTTGATCAGCAACCTGCTGGGGATTAGGGATAGGTCTTTTATAGATAAGGTACTGACGGCGTCCGCCGACGACGCTGCTAAACTATTGGGAGTTAAAAACGGGATGAgagaatag
Protein Sequence: MQGVVFMPQNPQQGSPPPNNQIGTEITMEVNSVSTKELPTNQSTQSDSGIFSATNTSNMEHCDTDNRSDCSSPERKYMCPICERMLTSQHEFTLHIRSHNNESETQDDKGFTCRICFKVLSSSSSLDRHVLVHSGERPFHCRYCGDTFTTNGNMHRHMRTHNKNENYESDGSSDSNVSTSSKSTEFNNNKIESKKRKLESADQTNKRAENSSDGEGQQFYKCPVCDRTDFDSIVALETHLEDNHPDYPAKCNQCNQLFQNNKLLMIHRSIVHSNTKKHTVTGFKDLTFVDFSSEKFPHIARYECEKNVHTASDGLTFQCQNCPRAFPCNSSLEIHEKDCTLNNYNSGLDLSRSTQLSETDIRRSEFFSRLNLQDNSPEKFIPPPQINDTSTKLRQQLLAKVMTNDSSKDLADIQSIISMTTNGSLLRQLQAKSDVTLGNHKNSFEQSQECSRSEQEEESQDLFAVEFRKMKLRGEFPCRLCTAIFPNLRALKGHNRAHLNGNNNGMYRCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKAIIYHPSEDPTNEDLNKLTAREETRKSNNELSVEKLCVTPKLSELRNILPESAKAEVTPLIPKLLKETLNEPLSKEPSNLFSNIGELIRSENLKSLKDHRLQNGQLSPYLPPAYNFSPKSSNVSTPHNLSSKIHVKNLEDLKETHFEPHSDPEYEDAEDEPMNLVLDLSKKKTQEEKKQNTETCPQDLSKKSPPNALSMRELFAQQLLKGPADPAAWYATLYRNTFHGFTGWPGLPLNPLLFPSLPAPLLPQDAQDMKERLQRYQLCGGSMITDNFTKHLKNFQAPPNAIFNNFKIGEMSSDSDLKQSEEMKPLSLSIDPTFGDTYKLHSPIPPTKSDLTQSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGHISTPGRKSQMKTGYCDLSIPNYELPKTQEFDETKEQIDDKVKFAILAQHLRVNKEIKKEEDDDCALVIDENTEKSEVKTEDNQRHYEGGFEKSRILEEKLKELHAKHFKPEKPKTEDNQDLVPVSRLLDNASQQQFKEYFKRESEEHEVGGASEEDEEGLVASGSTSEGNISGTDENKSESEAAAPAKKKSAYSMAPNRVSCPFCSRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNNATTISNDVVNNNTNYLMRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHSTNAQGDDIKAQGYEAGSSEDEKLPSSDSKTDWDVPVKTEVQNAVQNSDLPFKCHLCDGSFGDRQDALEHIKAKHFAEYDLLMSKNALDSNATTPEDGGHHDDEENDMRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFDCEPMNSDEDNNANFEKYAKSENNNMHKEKTDESDGNEGGDLISNLLGIRDRSFIDKVLTASADDAAKLLGVKNGMRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01568293;
90% Identity: -
80% Identity: -