Eagr003881.1
Basic Information
- Insect
- Eledona agricola
- Gene Symbol
- Prdm15
- Assembly
- GCA_964023215.1
- Location
- OZ026854.1:7929835-7934246[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.4 37 5.4 0.2 2 23 201 222 200 222 0.95 2 12 2.3e-05 0.0021 18.8 3.8 2 23 230 252 229 252 0.96 3 12 0.00029 0.026 15.3 0.8 1 23 346 368 346 368 0.97 4 12 0.0088 0.8 10.6 7.0 1 21 372 392 372 393 0.95 5 12 0.00018 0.016 15.9 5.1 1 23 398 421 398 421 0.93 6 12 0.08 7.3 7.6 3.4 1 19 425 443 425 446 0.93 7 12 2.7e-07 2.5e-05 24.8 1.8 1 23 456 478 456 478 0.98 8 12 0.0084 0.76 10.7 0.1 3 23 486 506 485 506 0.97 9 12 1.5e-05 0.0013 19.3 1.2 1 23 511 533 511 533 0.98 10 12 5.6e-05 0.0051 17.5 1.3 2 23 540 561 539 561 0.96 11 12 2.1e-05 0.0019 18.9 2.5 1 21 567 587 567 588 0.96 12 12 8.8e-06 0.0008 20.1 0.6 1 23 604 627 604 627 0.98
Sequence Information
- Coding Sequence
- ATGGACACAAGCAGCGATTGTTGTGTAATTTGTGGCGAGGCGCACAAACTCGACCGCTGTGATTACATAAAAATCTCCGAACATgtGTTAGACAACGACATTCCGTCCAGAGCTAAACTCACGTTACCCTCGTTCTTGGAACACAACATTCTGAGCGATGGGACACACTCCGTCACTGCCAAACAAACCATTGACAAAGGGACAAAATTTGGACCATTTCAAGCGGAAAAATCACAAACATTTGACCCTTCAAACACATTtattttaagaatctgtccacAAGAGGGAGAGGATGGTGGCGGCGGTTATTTAAATACAAGCAACGAAGAGAAGTGTAACTGGTTAATGTTCATACAAAATGCTGATTGTGTAGAGGAACAAAATCTAATTTGCTACCAGGATGATGGTGATATTTACTACGTTTCCATTAGAAATATTGAAAATGGGGAGGCTTTGAAAGTTTGGTATGCCCCATATTATGCTAGgaaaatgaataaatcactCTTGGCCAGCAAAAACAATACTGACACTGCCTTAAAAGACATAGacATCAATACCCTGATTAAGAAGCAGCAGAAGATAACCGAACGCAAGACTTGGACGTGCAAGTTTTGCGGTCAAATCGAAAGCACTATAGTGACATTCGCGCGCCATATTCTTAAGCACTACACCGATCAGCGCAGCACTAGATGTCAACTGTGCGAGAAGACGTTCCGATCGAAGAACCACCTTAAAAGTCACTTAAAAATCGTGCACAAAGTATATTTTCCGTCCGCGCAACCCAAACAGGCGAGGGTTTCTAAAATGCCCACGACTGCGTCTTGCAGAGACGTGATCCTCGGAGGGCCGTTATTGAACGACATCTTCACGGACAGCTCGGACCTGCAGCAGTCCGAGTTGAGATCGTTCGACTTGACGCTGGACAACCAAAACTTATTGTTGGACAACGACGATTTGATTGTAGACAACCTGCTGAATGAGAACGTCAAAGATTTGGATCATTTCAACTTCGACATCGACGACGACCAAAATCAGTTCGTGTGCGACATCTGTCTGAAACAGTTCACCAAAGCGCGGCTCCTAATGCTGCACCTCCGCTTTCACACGGGCGACTTCACCTGCTACAAGTGCCTGAAAATATTCTGCCGCAAGGAGAATCTGAAGGCGCACCACTGCCTCTCGAGATCGTCGCACAAGTGCACCTTGTGCGAGAAAAAGTtccaacaaaaaaaacacctgtcGCGTCATATGGACGCGGTGCACATGAAAAAATTCAGTTGTGCCTCCTGCGGCAAGTGTTACTTCTCGAACCGGGACTTGATCGAGCACAACTGCTCGCAAGTCCCGATTTCGGACAAGGAGAAGTTCGTGTGTCCCGTCTGCGACAAGACTTTCTACCGTCGCTCGTACCTCCGCAAGCACTCGAAAGTTCACAACTCCAAGTTGGGAGTGTTGTGCGAAATCTGCGGCCTCCGTTTGGAGAACAGCGAGTCCTTGTACAAGCACGTAACCATACACGGGGAGCCCGCTTTCAGCTGCGACTCGTGCGACAAGAAGTTTTACCGTTCGGATATGTTGAGGGAGCACGTTTTGACCCATGGGGAGTCGCAAGGCGTCGAGTGCAACGTCTGCAAGAAGAAGTTCAAAAATTGGAAAGTGCTGAAGAGTCATGTTAAAAACCACGGCGGCGGTCGGGCGTTCAAGTGTTCGGGGTGCAATCTGTCGTTCAAACACCGCTCTAGTCTCTATCGGCACTTGAAAGACGATCGGAATAAAAACGTGTCGAAGAAGAACGAAAAGAACGAGTATTATTCGTGTCCGGTTTGCGACAAGTCGATTAAACTGAGGAGTTCGCTTTTGAGGCATCTGAGGAAGATGCACTTGGACGTGCAGCTTGATTTGAGCGCGGTGCGACCCAAGCCACGCGACGCCAAAAACGTGCAAATTAGCAATGCTGGAAACAAGTGGGATGTGCAGATCGACCACTTGCTGGAAAATGCTGAGAATAGCACCGGTTTTCAGAAACAGGCCGTTGATAGTTTGGTCGAGGAGTTGGTCCAAGATGGTGGAGTTGAAGTGAGCGTGCCACAAGCAGTACCTGACAACTACCAAGAGATTACTTTAGATAAAAACGCTTACATCTTAGACAATGGGACAATAGTACAACCGCAAGATGACCCAAATGATGTCGTTATATACGTTTTGGAACAGACCTATCAAGTTGAATAG
- Protein Sequence
- MDTSSDCCVICGEAHKLDRCDYIKISEHVLDNDIPSRAKLTLPSFLEHNILSDGTHSVTAKQTIDKGTKFGPFQAEKSQTFDPSNTFILRICPQEGEDGGGGYLNTSNEEKCNWLMFIQNADCVEEQNLICYQDDGDIYYVSIRNIENGEALKVWYAPYYARKMNKSLLASKNNTDTALKDIDINTLIKKQQKITERKTWTCKFCGQIESTIVTFARHILKHYTDQRSTRCQLCEKTFRSKNHLKSHLKIVHKVYFPSAQPKQARVSKMPTTASCRDVILGGPLLNDIFTDSSDLQQSELRSFDLTLDNQNLLLDNDDLIVDNLLNENVKDLDHFNFDIDDDQNQFVCDICLKQFTKARLLMLHLRFHTGDFTCYKCLKIFCRKENLKAHHCLSRSSHKCTLCEKKFQQKKHLSRHMDAVHMKKFSCASCGKCYFSNRDLIEHNCSQVPISDKEKFVCPVCDKTFYRRSYLRKHSKVHNSKLGVLCEICGLRLENSESLYKHVTIHGEPAFSCDSCDKKFYRSDMLREHVLTHGESQGVECNVCKKKFKNWKVLKSHVKNHGGGRAFKCSGCNLSFKHRSSLYRHLKDDRNKNVSKKNEKNEYYSCPVCDKSIKLRSSLLRHLRKMHLDVQLDLSAVRPKPRDAKNVQISNAGNKWDVQIDHLLENAENSTGFQKQAVDSLVEELVQDGGVEVSVPQAVPDNYQEITLDKNAYILDNGTIVQPQDDPNDVVIYVLEQTYQVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -