Eagr011174.1
Basic Information
- Insect
- Eledona agricola
- Gene Symbol
- -
- Assembly
- GCA_964023215.1
- Location
- OZ026857.1:24499950-24503414[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00073 0.066 14.0 1.2 1 23 121 144 121 144 0.94 2 21 1.7 1.5e+02 3.5 2.8 1 21 258 278 258 279 0.92 3 21 0.28 25 5.9 6.1 1 23 308 331 308 331 0.92 4 21 5.9 5.4e+02 1.7 0.0 6 19 342 355 342 358 0.94 5 21 0.18 16 6.5 0.2 1 23 364 387 364 387 0.90 6 21 0.0001 0.0094 16.7 2.2 2 23 467 488 466 488 0.97 7 21 0.009 0.82 10.6 1.1 1 23 502 523 502 523 0.95 8 21 0.00029 0.026 15.3 0.3 3 23 528 548 527 548 0.97 9 21 0.0015 0.14 13.0 0.5 3 23 580 601 579 601 0.94 10 21 0.035 3.2 8.7 0.5 1 23 624 647 624 647 0.96 11 21 0.0022 0.2 12.5 1.8 2 23 661 682 660 682 0.97 12 21 0.0043 0.39 11.6 6.6 1 21 713 733 713 735 0.95 13 21 0.031 2.8 8.9 1.7 3 23 754 775 754 775 0.93 14 21 0.00012 0.011 16.5 1.3 1 23 800 822 800 822 0.98 15 21 5.3e-06 0.00048 20.7 0.4 2 23 838 860 837 860 0.96 16 21 9.5e-05 0.0086 16.8 0.0 1 23 876 898 876 898 0.95 17 21 0.076 6.9 7.7 0.1 1 23 931 954 931 954 0.95 18 21 0.0042 0.39 11.6 1.9 2 23 965 986 965 986 0.97 19 21 0.00027 0.024 15.4 0.2 1 23 999 1022 999 1022 0.96 20 21 5.2e-05 0.0047 17.6 3.8 1 23 1028 1050 1028 1050 0.99 21 21 0.0027 0.25 12.2 0.1 1 23 1067 1090 1067 1090 0.95
Sequence Information
- Coding Sequence
- ATGGCCGACGATAAACTATCGACCATGGTCTGCCTTCGTTGCATCGAAAAAATAAACAGCTGGCAGTCCTTCAAAGTGACTTGCTCTGAGAACCAAACGAAGCTGGAGCAATGGATGAACATGTCAAACTCGGACGTGTCGGATATGACCATCCAAGTTAAGGAGGAGCCGATCGACCACGAGACGCTCACACCGGAGGTGATCCTCAACGGAGAGGTCTCGGTTAAGAACGAACCGGTGGAGGAAGAATACAGCGAGTTTCCGCCGCCGCTTACTCCCCAAGGTGCGGAGGATGGGGAAGTCGTCGCTCATTCTCCTCTCTCCCAAATCACCAACAACGATGACGATCGAAACGATCCGCATGTGTGTGGCGTTTGCGGCAAATTCTTCAGCACGATCGGCAACCGAAGAAAACACGAAAAAAACATACACGGTGCCAAAAATTACAGTTCAGTTAGCGAAACCGAGATCGGTTCTGTGAGTCAGGACGAGAGGTCGCAGGAGACCCAGGACTCCGCTGAAAGCTCGCGGACGCCCACGGCCGAAGAAAGAAAGATTCTGTTCGCCGCGGGGTTGAAGTTGCTTCAACGCGACTCCACACCCCCCATAGAGTTCGAGGACCTATCGAAAATCGAGGAGAGCTACATAGAGAAGTGCAAAGCTATGGTTAATATGTACGGTTCGCTTCGTTGCGCCTGCCACAACGTGAACCACCCAAACTTGAAGGGGTTGCTGTCACATCTTCGATCGCTCCGCATCTGGTTCCCAGTTTTCACCTGCTACCACTGCATGATTACGTTCACCGACAGATCCACCAGCACCAAACACTATCTAAAGTGCCCGAAGAAGAATCTCGAAACCCTCATCAAGCTGTCGAACTTGAAGAAGCGAAGCGAGGTGAAGACGCGTCTCTATCAGAACTACAAGTGCACGAAGTGTAGGTTCATGTTTTCGTTCCATGAAGACTTCTGCACCCACGTGGACGAGGAACACGGACATATCTCTTTACCGTTGACTTGCCCGTGCGGCAGACTGTTCACCTCATTGGAAGATTACAAAGATCACGCCTACGTCAGCTGCTTGGTGGAGTTCTACTGTGATATTTGCTTCGTCACGATTCGGACGTTGGAGGCGTTCCAAAAGCACGCATCCGAGGTGCACGACAATGCAGATGGGTTCGTTCTTTTGCAAGAGGACAATTACAAGCAGAGGCGCTCCACGCCGACGACCACGCGGAACCGACGAAGCATAAAGCGTGAACACACCGACGAGAGCAATATTATCACGGGGAAGCGTCGCAGTTCCTACAAGCCGGCGATTTTGGATGCGGAAGAGGAAGAAGAGGAGGAAAAGGAGAAGGTGTTGAATCCGGTGTACGTGAAGAAGGTTCCAGGGACGACCTGTCCGATTTGTTCCAAAGAGTATTCGTCGAACCACAACATGTTGAAGCACTACAAGGTTCACCTGCAGGAGAAGAAGGAGGCGGTCTTCGACGACTCCATTTACTGCTGTCCAGACTGTGGCGGCATGTTCAGTACTAGCGAATGGGAGAAGCACAAGAATATGCACAAGAAGAAGGCGTGCAATGAGTGCGGGAAAATCTTCCAGTTTCAGTCCGAGTTGGACCAACACAGGAGCGTCCATCTCAATCTCAAACTGTACAGAGATTCCAAAACGCAATCCTATAAGAGTACCATGATAAGTCCCAACAGTGAAACGAACAATATCGTGTTGCTGTGTGAGATTTGCGACAGCATGTTCACCTCTAAGGAGCAGCTAAGGGAGCACAAGCTCCTCACACACGAGACCATGCCCGTCTTGGAGTCGATGACTACAGAGACCGACGTTGACACGAAAGAAAAGAAAAAGTACGCCTGCAAGTTCTGTAACAAGCAGTATGCAGGCTACGGAGGTTTGTGGGACCACAACCGGAAGAAGCACCCCGAAAATAAAAGCCCGCACAGCGGCGAGTTTCCAAAGAAGTGTAAATATTGTGAAAAAGTATTCTACACGGGCGGATCCTACTTTATGCACAGACAAATGCACGAACGCAACAACCAAATCGCTACAAAGAAAGAGCAACAAGAACCACCTCAGCTGCAAGAGGAGACAAACGACGACGAAGAAGAATCATATCACACTTGCAAGCGTTGCTTTAAAGTGTTCGCCAATCGCTATGGCCTCAAGAATCACATGAAATGTCACGGAGTGAACAGTCCTCAAGGCAAGTCGGTGAAGAAAGTCACCAAGAAAGTGTGGTGCGATGTATGTCATTGCGCGTTCGAGAGCGTGGCGAATTTGGAGCGACACAAATCTGAGGATCATCCTGAAACCGACGAGACCATGCCCACGCTATCTGACGAGCAAAGCGAGGTGGACATCAAGACTCCATTCGTTTTTACTTGCGACGTTTGCGTGCAAACCTTCACCACGAAGATTGCATTGAAGAAACACAAAGAGAAGCACGCCACAGAGTTGCGGCCGATAATGAAGAACAAGCAGCATTTGGTGTACTGCAAATACTGCAAGATTTCGTTTGCGAATCCCTTCCAGCTGACCAACCACATGAAAATCGAGCACGAGAAGGAGGCGAAGCCGTTCCAGAAGAAGGAGAAAACGAAGAATTTCTCTTGCAAGTTGTGCGGGAAGGCGTTCGGTTCCGCGGCGGCGCTGTGGGCGCACCAAGGCTGGCACAAACGAGGCAAATACGGCGGAGAGAAGAAATCATCAACAACGGAACCAGCACCAGTCATGGCCAAAGTCAAGGAAGAGCCGCTTGATAGTGGGCACTTCCAATGTTCCACGTGTAAAGCTGTACTGCCCAACGATACCGCGCTCCAGATTCACATTTTGGAGAAGCACAGGAACGTCAACGCGACCATTCTCCCTGCCAGATGCAAGACGTGCGATTTGGACTTTAACTCGCAGGAGCAGTACGAGCAGCACAAAAAGTACCATGCGATGGTCGAGAAGCAGCAGCCCAAAACGAAAATGTACGCGTGCAATCAATGTCCGGCGGCCTTCAGCAAGGCAGAGATGTTGAAAACGCACGTCAGACAGTTCCACAAGGAACACAAAGAGTACAGGTGCCATCACTGTAATAGGGTGTTTGAAAAAGCGAATTCGCTGAGCATTCATTTGAAAGTGCACGAGAAACAGAAGTTGTTGACTGGGGCGTCATCTGCGAAGCAAGCGAAGTTCTTCTGTTCGATTTGCAACGAGGGATTTGATGTTCCCAACGATCTGAGGATGCATACCATTAAAGCGCATCCGTTTTGA
- Protein Sequence
- MADDKLSTMVCLRCIEKINSWQSFKVTCSENQTKLEQWMNMSNSDVSDMTIQVKEEPIDHETLTPEVILNGEVSVKNEPVEEEYSEFPPPLTPQGAEDGEVVAHSPLSQITNNDDDRNDPHVCGVCGKFFSTIGNRRKHEKNIHGAKNYSSVSETEIGSVSQDERSQETQDSAESSRTPTAEERKILFAAGLKLLQRDSTPPIEFEDLSKIEESYIEKCKAMVNMYGSLRCACHNVNHPNLKGLLSHLRSLRIWFPVFTCYHCMITFTDRSTSTKHYLKCPKKNLETLIKLSNLKKRSEVKTRLYQNYKCTKCRFMFSFHEDFCTHVDEEHGHISLPLTCPCGRLFTSLEDYKDHAYVSCLVEFYCDICFVTIRTLEAFQKHASEVHDNADGFVLLQEDNYKQRRSTPTTTRNRRSIKREHTDESNIITGKRRSSYKPAILDAEEEEEEEKEKVLNPVYVKKVPGTTCPICSKEYSSNHNMLKHYKVHLQEKKEAVFDDSIYCCPDCGGMFSTSEWEKHKNMHKKKACNECGKIFQFQSELDQHRSVHLNLKLYRDSKTQSYKSTMISPNSETNNIVLLCEICDSMFTSKEQLREHKLLTHETMPVLESMTTETDVDTKEKKKYACKFCNKQYAGYGGLWDHNRKKHPENKSPHSGEFPKKCKYCEKVFYTGGSYFMHRQMHERNNQIATKKEQQEPPQLQEETNDDEEESYHTCKRCFKVFANRYGLKNHMKCHGVNSPQGKSVKKVTKKVWCDVCHCAFESVANLERHKSEDHPETDETMPTLSDEQSEVDIKTPFVFTCDVCVQTFTTKIALKKHKEKHATELRPIMKNKQHLVYCKYCKISFANPFQLTNHMKIEHEKEAKPFQKKEKTKNFSCKLCGKAFGSAAALWAHQGWHKRGKYGGEKKSSTTEPAPVMAKVKEEPLDSGHFQCSTCKAVLPNDTALQIHILEKHRNVNATILPARCKTCDLDFNSQEQYEQHKKYHAMVEKQQPKTKMYACNQCPAAFSKAEMLKTHVRQFHKEHKEYRCHHCNRVFEKANSLSIHLKVHEKQKLLTGASSAKQAKFFCSICNEGFDVPNDLRMHTIKAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -