Basic Information

Insect: Eledona agricola
Gene Symbol: -
Assembly: GCA_964023215.1
Location: OZ026854.1:10729273-10736074[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.7e-06 0.00015 22.3 0.7 1 23 172 194 172 194 0.99

2 12 0.00047 0.043 14.6 2.3 1 23 200 222 200 222 0.97

3 12 3e-05 0.0027 18.4 3.6 1 23 228 250 228 250 0.98

4 12 0.00012 0.011 16.5 1.4 3 23 264 284 262 284 0.95

5 12 4.8e-05 0.0043 17.7 0.2 2 23 291 312 290 312 0.97

6 12 4.6e-06 0.00042 20.9 3.8 1 23 318 340 318 340 0.98

7 12 2.2e-06 0.0002 21.9 0.1 1 23 346 368 346 368 0.96

8 12 1.8e-06 0.00016 22.2 0.1 1 23 374 396 374 396 0.98

9 12 4.2e-07 3.8e-05 24.2 1.7 1 23 402 424 402 424 0.98

10 12 3e-06 0.00028 21.5 3.2 1 23 430 452 430 452 0.98

11 12 9.8e-08 8.9e-06 26.2 1.0 1 23 458 480 458 480 0.96

12 12 7.5e-06 0.00068 20.3 0.4 1 23 486 508 486 508 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.7e-06	0.00015	22.3	0.7	1	23	172	194	172	194	0.99
2	12	0.00047	0.043	14.6	2.3	1	23	200	222	200	222	0.97
3	12	3e-05	0.0027	18.4	3.6	1	23	228	250	228	250	0.98
4	12	0.00012	0.011	16.5	1.4	3	23	264	284	262	284	0.95
5	12	4.8e-05	0.0043	17.7	0.2	2	23	291	312	290	312	0.97
6	12	4.6e-06	0.00042	20.9	3.8	1	23	318	340	318	340	0.98
7	12	2.2e-06	0.0002	21.9	0.1	1	23	346	368	346	368	0.96
8	12	1.8e-06	0.00016	22.2	0.1	1	23	374	396	374	396	0.98
9	12	4.2e-07	3.8e-05	24.2	1.7	1	23	402	424	402	424	0.98
10	12	3e-06	0.00028	21.5	3.2	1	23	430	452	430	452	0.98
11	12	9.8e-08	8.9e-06	26.2	1.0	1	23	458	480	458	480	0.96
12	12	7.5e-06	0.00068	20.3	0.4	1	23	486	508	486	508	0.97

Sequence Information

Coding Sequence: ATGGATATGAGTGTATATTTAACAGCCCCTTTAAGACTGGATAAAATCTGTAGGGCCTGTTTGACTGAAAAAGGGGACATGAGGCCTTTATTCGGGGCTTGTTTGGATGAAATGCTCGTGTCATTTGCTTCAGTTCAGGTGGAGGAAGGCGACGGTTTACCGAATTTGATGTGCGTCCAATGCGTTTTGCAATGCAGTAGAGCCTACACGTTTAAGCAGCAGTGCGAAAAGTCGGACAATATTTTGCGGCAATACATCAGTGCAGAATTTCAGCAACAACTGGCCGAAGCACTGAACGAACAGACTAAAGACGATCTTCACGAGCAGCTTCAATTCCCTGATAATATAGCTAATGTTGTTATAGAGGAAGGCATAACGGCCGAGTTTGTGACTTATAATCAACCAGATGAGGATGGGGAGGTCAAACAAGATTTGTATTCGTTGGAGGCAACCGGCGACATCCAACACCTGGAGGTTAAAATCGAGAAAGAAGGCAGTCCCCACAAGCTAAAATATCGGTGCAACAAGTGTGAAGAGTCGTTCTCGCTCAAAGTCGATTTGAAAGTCCACATGATGTCCCATCCCAAAGACCTAGACCACGTGTGCCATGTCTGCAATAAGGCATTTCCCGAATCTCGAATCCTCAAGCGACACCTGAAGATCCATCTCGACAAGAAGCCGCACCAATGCGACCAGTGCAATATGTCTTTCGCGGAGAGTTCAAACCTCAGCAAGCACAAAAAAAAGCACACGGGAGAGCTGCGAAACATTACCGGAAAGCCCCATTTGTGTTCGGTGTGCGGGCGGGCCTTCAAATGGGCCTCGAGTTTGTCCAAACACATGAAATATCACACCGGACACAAACTGCTCTCGTGCAATGAATGCGGGAAGCAGTACGTGGAGGCGAGGAGCTTAAGAATACACGTGAGGTCTCACACGGGGGAGCGGCCCTATAACTGCAACGTTTGCCAGAAGCGGTTCACGCAGATGTGTAATTTGGAGAAGCACCTGCGGGTGCACACGGGCGAGAAGCCGTTCCTGTGTCCCATCTGTGGCAAGGGATTTACGCAGTCAGGATACGTGGGGATCCACATGAGGACGCACACGGGGGCGCGGCCCTACGTGTGTCAGACGTGCGGCAAAGCGTTCGCCGGCTCCAACACTCTCACAATCCACCAGCGGATCCATACGGGCGAGAAACCGTATTCCTGTAACATGTGCGGGAAAGCGTTCAGTCGCCACGAGACGCTCATCATCCACACGAGGTCGCACACGGGGCACAAACCCCACGTCTGCAGCGTCTGCAAGAAGGGATTCACGTCGTCGGGGCACTTGTCGGGCCACATGAGGACGCATACGGGGGAAAAGCCCCACGCTTGTAACATTTGCGGCAAGAAATTTGCAGGTTCGAGCAGTTTGAAGGTGCACATGAGAAGTCATTCTGGGGAAAAACCGTTTATTTGTAAATTGTGCGGAAAAGGATTTACGCAGTCGGTTTTGTTCCAGCAGCACTTGGCTTCGCACGCCTGTGTAGACGATAAGAGTCAAATTACGAAGATTGAAACTGTTCTTGTTCCAGATATAATGTAG
Protein Sequence: MDMSVYLTAPLRLDKICRACLTEKGDMRPLFGACLDEMLVSFASVQVEEGDGLPNLMCVQCVLQCSRAYTFKQQCEKSDNILRQYISAEFQQQLAEALNEQTKDDLHEQLQFPDNIANVVIEEGITAEFVTYNQPDEDGEVKQDLYSLEATGDIQHLEVKIEKEGSPHKLKYRCNKCEESFSLKVDLKVHMMSHPKDLDHVCHVCNKAFPESRILKRHLKIHLDKKPHQCDQCNMSFAESSNLSKHKKKHTGELRNITGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCNECGKQYVEARSLRIHVRSHTGERPYNCNVCQKRFTQMCNLEKHLRVHTGEKPFLCPICGKGFTQSGYVGIHMRTHTGARPYVCQTCGKAFAGSNTLTIHQRIHTGEKPYSCNMCGKAFSRHETLIIHTRSHTGHKPHVCSVCKKGFTSSGHLSGHMRTHTGEKPHACNICGKKFAGSSSLKVHMRSHSGEKPFICKLCGKGFTQSVLFQQHLASHACVDDKSQITKIETVLVPDIM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01278372;
90% Identity: -
80% Identity: -