Eagr004724.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eledona agricola
Gene Symbol
-
Assembly
GCA_964023215.1
Location
OZ026854.1:18015901-18021600[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00023 0.021 15.6 0.3 2 23 174 195 173 195 0.97
2 16 0.00018 0.017 15.9 3.8 1 23 200 222 200 222 0.97
3 16 0.00026 0.023 15.4 5.2 1 23 228 250 228 250 0.97
4 16 0.00071 0.064 14.1 0.7 1 19 256 274 256 277 0.94
5 16 1.7e-05 0.0015 19.2 0.7 1 23 284 306 284 306 0.96
6 16 1.5e-05 0.0014 19.3 0.6 1 23 488 510 488 510 0.98
7 16 0.00016 0.014 16.1 8.8 1 23 516 538 516 538 0.97
8 16 1.7e-05 0.0016 19.1 2.0 1 23 544 566 544 566 0.97
9 16 0.0002 0.019 15.8 3.9 1 23 572 595 572 595 0.96
10 16 0.013 1.2 10.1 2.0 1 23 606 628 606 628 0.94
11 16 0.00092 0.084 13.7 8.0 1 23 634 656 634 656 0.98
12 16 1.6e-06 0.00015 22.4 0.5 1 23 663 685 663 685 0.96
13 16 2.1e-06 0.00019 22.0 1.2 1 23 691 713 691 713 0.98
14 16 3.1e-07 2.8e-05 24.6 0.9 3 23 721 741 719 741 0.96
15 16 2e-05 0.0019 18.9 0.2 1 23 747 769 747 769 0.99
16 16 0.042 3.8 8.5 0.7 1 23 774 797 774 797 0.97

Sequence Information

Coding Sequence
ATGCCAAGCAATGGGAATTCGGACAGTTGGGACGCGTCTGTCAGTTTCCCACCATCCAGTCCAGTGGAGGTGAGCAATCCCCAAAACCAACGAAAAATGGAACAAGTCCTGTACGACTTTAGTCGCATTTGTCGGGCGTGCAAAAATGAGTCACCCGATCTAAGATCGATGTTTGAGGAATGCGAATTGGTAGCCCAATGTCCCCGCATTGACGAGATGCTAATGGCTTGTACGGCGGTACAGGTAGCACCTGAAGACGGTCTGCCCACTTTGATATGCACCAAATGCATCAATCAAGTGAAAACCGCCTATGATTTTAAGCGGCAATGCCAGGAATCAGACGTCTGTCTCAGGGAATACATGAAGAGCTTGAAAGTGGATAATATCAAAGAAGAATCACAAAGTACAGAAGTCATGCCGATAGATCCTCTCTCCGAAATGGAGGATGATAATTTATCAGAAGAATTAGTCAACGACTacgattttataaaattaatggaCAACAACCAGATGGTCGTTACGTGCCGGGAATGCGGCAAAGTTTTCACTACAATCGAAGGGATCCGAAGCCACAAACGCATTCATCTTGGCACATTATTCAAGTGCAAATACTGCGGCAAAGGCTACACGCGACTGACGCATGTCTATCGGCACGAACTTTCACATGGGAAGCATAAATTGCATGTGTGCCGTATTTGCAACAAGACCCTGACCCGGATGGAGCATCTAAAGCGGCATTTGACTACACATCTAAAGGAGAAACCGTTCTCATGCAAGACGTGCAATCGGGGATTTAACCGATCCGATCATTTGGACGTGCATGCGGTCAAGTGCAAAGGGGAACGTATGCACATTTGCGATATCTGTAACAGGGGATTTTCGCGGGAGGACAGTTTGGAAGTTCACAAAAGGTTGCACGAAAACCAGAAGCCTGTGCTGCCGACTTTGGACAACATAGACAACATAGAGGAGCACTACTATGAAATTGACTACGATCCCAATATGGACTATTCGGCTACATCTGACGTGGATGACTATTGGGAGCCACATGTTGAAGTAACCGAAAATATGGACGAGGATAAAATTAAAGAAGTCGCCAATTTACAGAAGGAAGACAATTTGTCGCATAAAGGCGTAGATTCAGCGGAAGAGGACGTCAAAGACATTCTGGAGGCGCAGGTTCAAGGGAAAACGCAAGATTCTGATTTGAACACGGATCTTGAAAACGATATTGCCGGCGAATTTGAACAAGATGACGATGTGAACGACAACAACGATTCGGATGCTTTTGATACAGAATACCTCCCCACCAAAGTCTCACCTCCCAAGACTAAGAGGAGTCGAGGGCGTCCAAGGAAGTACACCGCTGGGTGCAGGTCAGGAGCAAGGCCACGCGGTCGTCCACCTGGATCAAAAAAGGATCGCAGGGAAGCGGTTGATGAAAAGGAAGAGGAGGGAGAGTTTCCGTGTTCAACTTGCAACGAATTCTTTCCTAAACTGAGTGGTTTGGAAAAGCATATGAAGAGCCACGACGGTGTAAAAAGTCACACGTGCAAGTTTTGCAACAAAGAGTTTTCCCGGTTTAATCATTTGAAAAGACACATGACTTCGCATTCAGTTATTCGCCCTTTCTCGTGCGATGCTTGCGCTAGAACCTTTTCAAGAAGAGATCATCTTCAGCAACACATCAGACTGCACGAACAGAAGTTGGAATTTCAATGTGATATCTGCATGAAGACGTTTAACAGGAGGGATCACTTGGCAAAACACAAAAGTTCGAAGCATATGGGAGAAAAGGTCCTGGGCGAGAAGAAATATGAATGTCATGTTTGTTTAAAGACCTTCACGACCGAGAAATACCGCGACGTACACGTCAAAGGTCACATGGGTGAGAAACGTTTCCAATGTAAAACATGCGAGAAATGTTTCCTCTCCAAGTCTCACTTAACCGAACACATGAAATTCCACAACGAGCATTCGAAAAAGTTCTTGTGTTCCGAATGCGGCCAGCGATTCATCCGAAACGATTACCTCGTGATCCATATGAGAAGACACCGAGGCGAAAAACCTTTCAAATGTAAATATTGTGGAAAAGGATTTCCTAGAACTACCGACTTAACGGTACATGAACGTTACCACACGGGAGAGAAGACGCATTTGTGCACGATTTGTGGACGCGGTTTCGGGAGGGCTTACAATTTAACGGTGCACATGCGAACACATACGGGGGAGAAGCCCTACAGGTGCACTTACTGTGACGCCGCTTTTGCGCAAGGCAACGATTTGAAGGCGCATGTGCGGCGGCACACGGGAGAGAGATTTCAGTGCGAGTTGTGTACGGAAAGCTTCCTTATGGGCTACCTTCTGACGCAACACAAACGAACTGTGCACGGTCTGAACGTAGTCAGCAACATCAGACGGCTGACCccaatcaataaaataaaagagGATGCGGACGATCCGCCTCCAATCACGATTCAATTGCCCAAACCCGTAGTACCTGATATTTTGCTTACAAACATCCAAGCCCACTTTACTGCACAAATGCAACAACACCAAATGGCGAGGGAATAA
Protein Sequence
MPSNGNSDSWDASVSFPPSSPVEVSNPQNQRKMEQVLYDFSRICRACKNESPDLRSMFEECELVAQCPRIDEMLMACTAVQVAPEDGLPTLICTKCINQVKTAYDFKRQCQESDVCLREYMKSLKVDNIKEESQSTEVMPIDPLSEMEDDNLSEELVNDYDFIKLMDNNQMVVTCRECGKVFTTIEGIRSHKRIHLGTLFKCKYCGKGYTRLTHVYRHELSHGKHKLHVCRICNKTLTRMEHLKRHLTTHLKEKPFSCKTCNRGFNRSDHLDVHAVKCKGERMHICDICNRGFSREDSLEVHKRLHENQKPVLPTLDNIDNIEEHYYEIDYDPNMDYSATSDVDDYWEPHVEVTENMDEDKIKEVANLQKEDNLSHKGVDSAEEDVKDILEAQVQGKTQDSDLNTDLENDIAGEFEQDDDVNDNNDSDAFDTEYLPTKVSPPKTKRSRGRPRKYTAGCRSGARPRGRPPGSKKDRREAVDEKEEEGEFPCSTCNEFFPKLSGLEKHMKSHDGVKSHTCKFCNKEFSRFNHLKRHMTSHSVIRPFSCDACARTFSRRDHLQQHIRLHEQKLEFQCDICMKTFNRRDHLAKHKSSKHMGEKVLGEKKYECHVCLKTFTTEKYRDVHVKGHMGEKRFQCKTCEKCFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYRCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLTPINKIKEDADDPPPITIQLPKPVVPDILLTNIQAHFTAQMQQHQMARE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-