Eagr004195.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eledona agricola
Gene Symbol
-
Assembly
GCA_964023215.1
Location
OZ026854.1:10847086-10857343[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1e-05 0.00094 19.8 1.8 1 23 135 157 135 157 0.99
2 16 0.0021 0.19 12.5 9.3 2 23 164 185 164 185 0.97
3 16 1.8e-05 0.0017 19.1 0.6 1 23 192 214 192 214 0.97
4 16 0.0016 0.15 12.9 1.0 1 23 288 310 288 310 0.99
5 16 4.6e-06 0.00042 20.9 6.4 2 23 317 338 317 338 0.98
6 16 0.00011 0.0096 16.7 4.3 3 23 356 377 354 377 0.96
7 16 8.9e-05 0.0081 16.9 2.8 1 23 444 466 444 466 0.96
8 16 8.3e-05 0.0076 17.0 1.5 1 23 472 495 472 495 0.93
9 16 6.2e-07 5.7e-05 23.7 0.9 1 23 500 522 500 522 0.98
10 16 1.3e-07 1.2e-05 25.8 1.5 2 23 532 553 531 553 0.97
11 16 1.7e-08 1.5e-06 28.6 0.8 1 23 560 582 560 582 0.98
12 16 2e-05 0.0018 18.9 1.6 3 23 594 614 592 614 0.92
13 16 0.00018 0.017 15.9 5.1 1 23 620 642 620 642 0.99
14 16 3.3e-05 0.003 18.3 3.3 1 23 648 670 648 670 0.98
15 16 6.3e-07 5.8e-05 23.6 0.4 1 23 676 698 676 698 0.99
16 16 0.0002 0.018 15.8 0.1 1 23 704 728 704 728 0.92

Sequence Information

Coding Sequence
ATGATTAATAAGTCGACGGAGGTAGTAATCGACAAAATCTGCCGTTCATGTATGTGCCAAAATGAGAATATGCGTAATGTGTTCGATTCAAAAGAGCTCGATGGCCAAACTTTGCAGCTCGCTGAAATGTTAAAGGAATGCGCCGCGGTCGCTGTCGCCTCAGGAGACGATCTGCCGAAGCTTCTGTGTGTAACCTGCGAGAACAAGCTGAGCCTAGCTTACGAGTTCAAGCAACAGTGCCGCAAATCCGACTCCACGTTGCGCAGTTTAACCAGTCGAAGTACGTCAGTGATCAAGGAAGACTCCTGTGATATAGTGGTGCAGCCCGATTTCAATTTTCCCGACTCGGAAAGTGACGATGACGATGATGATGTCCCAGACAAGCGGAAGACCACATCGTCGTTTACTTGTCCTTTTTGCCAGAAGGTGTTAAGGACGAAAAAGGGGTTGCGGATTCACCAGAGAAGGCACACGGGTGATAAGTTGCGTTCCTGTCACATGTGCAACTCGCAGTTCACCAGGACACATCATTTGATTAGGCACATGAAAACGCACGTTAAAACAGACGCTGGACATGTGTGTGTTGAATGCGGTATGTCGTTTGCGAAGCGGAGTAGTTTGATGGCACATAAAAAAGTGCACAAGGCTGAGTCGGGGGATAAAAGTGATGAGGGTGAGAATGGGGAGCAGTCGACTGCCCGACAGAACAATAGTGATTGTGAGAACGACAATTCGTTGGAAATGAACGACGATGAGGATTATGAGGAAGAGGAGGACGAAGACGATGATGAAGAAGATGAGGACAATGACGATGAGTTCTTTAAACCAAAAACTAGGGCCTCGGAGAAGGAGAAAGGGAATTATGAGTGCAAATATTGCTTGAAGATTATGACGACGTTTGTAGGGCTGAAAATTCACATGAGGAGGCACACTGGCTCTGATCTGGCAAAGTGCAAGTTGTGCGACAAGACCTTCACGAAGACGAGTCACTTGAAACGCCACCTCCAAACGCACGGAATCAACGAAATCGAGAAACCAAAGCCGGTCGAGAAGAAAGTGATGATATGCGAGTTCTGCGACCGAAAGTTCAAGTACAAGAAGAGCTTCAATCACCACATGCAAACCGAGCACGGGATGTCGGACGAAAGCGACGTTCCGCTCAGCACCTTAACAAAAAGCGGAAGAAAAAGTGAGGAGTCGCAGCAGGATGACCACGGCGACGAGGAATCGCCATCCGCAGAGATCAACCCCGATCAGGAACAGTCGACGTCTGACCAGGAAATCAGGGACAATGCTTCGGCGTCGTCCAAGTCGGCACACCACAAAGTGCACGTGTGTCACGTGTGCGATGCGGCGTTCGCCCGCGTCAATCACTTAACCCGTCACATGACCCTCCATCGAGCTCTTCTCACTCACAAGTGCGAGCGTTGCGACAAAGCCTACGCAACGGAAGACCACCTGAACAAGCACGTCGAAGAAGACCACGTCAACAAGCCCTACGTTTGCACCATCTGCAACAAGCCGTTCAGCAGAGGGGAGCACCTCATTCGGCACCTCAAGGTCCACCAGAACAGCAACGAAATCGATAATTTGACGTGCTCCATCTGCGAGAAGACGTTCAGCAGGTCGGATCATCTGGCGCGCCACATCAAAATACACCTCCTGCAAGATAAAAGACACGTTTGTCCCGAATGCGGAAAGGCGTTCAACAGGTTAGACAACCTGAAGACGCACCAGAGGATTCACACGGGCATCAAGGATACAACCAAGCTGCATCTGTGCATTTATTGCGGCAAGGAGTTCAACAATTCTAGCAATATGATTGTCCATATGAGGCGTCACACGGGCGAGAGGCCGTATAAATGTAGTCAGTGCGGGAAGGGATTTCCAAGGTCGCACGATCTCAAATGTCACGAGCGTACGCATTCGGGGGAAAAACCCTACCATTGCGTGTTGTGCGGGAAGTCCttcaataaaagcaataaattgCTGCGTCACACGAGAGTGCACACGGGAGAGCGCCCCTACGTGTGCAGTATCTGCTCACGCGCCTTCACTCAGTCCAACGACTTAGCACTGCACATGCGCCGTCACACGGGAGCCCGCCCGTACGCATGCGGAGTGTGTCCCGCGCGCTTTATCCAGTCGGGCCAACTGAAAACCCACCGCCGCTCGACGGGTCACTGGATGGAGACGCAACCCGAACTCAAAGGCGGTCACCGGGTGGAGCCAGTGACGCACGTCGTCGAGCCCAGGACCATTCGTTTCAAAACCCACGGCAAAGCCAAAGAAGAGGAAGACGAGCCGAAGGACGACAAGCTTCTGGCGCACACCGTCAGCCTAATGACTCCCATCCAGACCCAGAACCTGGTGCTCGACTCGAAAATCGTCGAGCTGCAGAACTCGGGACTGATTAATTTGGTTCGGGCGCCGGCCAGTAGAGGGTTTGTGGTTAAAAACGACGTGGCGGGGAAAAGTCAGGAGCAGACGGTGTCGATGGCGCAAGCCGCGTTTCCCCAAGGAATTTCAACAGTTACTTATTCGATTGTCGCTCCGGTTGCCACGGCGACGACGTTCACACCTGCGGACTACAGCAGTTACCAGAGTTTCTAA
Protein Sequence
MINKSTEVVIDKICRSCMCQNENMRNVFDSKELDGQTLQLAEMLKECAAVAVASGDDLPKLLCVTCENKLSLAYEFKQQCRKSDSTLRSLTSRSTSVIKEDSCDIVVQPDFNFPDSESDDDDDDVPDKRKTTSSFTCPFCQKVLRTKKGLRIHQRRHTGDKLRSCHMCNSQFTRTHHLIRHMKTHVKTDAGHVCVECGMSFAKRSSLMAHKKVHKAESGDKSDEGENGEQSTARQNNSDCENDNSLEMNDDEDYEEEEDEDDDEEDEDNDDEFFKPKTRASEKEKGNYECKYCLKIMTTFVGLKIHMRRHTGSDLAKCKLCDKTFTKTSHLKRHLQTHGINEIEKPKPVEKKVMICEFCDRKFKYKKSFNHHMQTEHGMSDESDVPLSTLTKSGRKSEESQQDDHGDEESPSAEINPDQEQSTSDQEIRDNASASSKSAHHKVHVCHVCDAAFARVNHLTRHMTLHRALLTHKCERCDKAYATEDHLNKHVEEDHVNKPYVCTICNKPFSRGEHLIRHLKVHQNSNEIDNLTCSICEKTFSRSDHLARHIKIHLLQDKRHVCPECGKAFNRLDNLKTHQRIHTGIKDTTKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSQCGKGFPRSHDLKCHERTHSGEKPYHCVLCGKSFNKSNKLLRHTRVHTGERPYVCSICSRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKTHRRSTGHWMETQPELKGGHRVEPVTHVVEPRTIRFKTHGKAKEEEDEPKDDKLLAHTVSLMTPIQTQNLVLDSKIVELQNSGLINLVRAPASRGFVVKNDVAGKSQEQTVSMAQAAFPQGISTVTYSIVAPVATATTFTPADYSSYQSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-