Eagr010868.1
Basic Information
- Insect
- Eledona agricola
- Gene Symbol
- ZNF236
- Assembly
- GCA_964023215.1
- Location
- OZ026857.1:21785907-21797497[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00037 0.034 14.9 1.3 1 23 95 117 95 117 0.98 2 24 0.00076 0.069 14.0 0.2 1 23 123 145 123 145 0.98 3 24 0.0002 0.018 15.8 0.2 2 23 151 172 151 172 0.97 4 24 0.0004 0.036 14.8 0.1 1 23 178 200 178 200 0.99 5 24 0.067 6.1 7.8 3.2 2 23 212 233 211 233 0.95 6 24 1.3e-06 0.00012 22.7 1.3 1 23 257 279 257 279 0.97 7 24 2.7e-05 0.0024 18.5 2.0 1 23 285 307 285 307 0.98 8 24 8.5e-05 0.0077 17.0 0.8 1 23 313 336 313 336 0.96 9 24 0.0034 0.31 11.9 4.7 1 23 346 369 346 369 0.97 10 24 7.1e-07 6.5e-05 23.5 0.9 1 23 454 476 454 476 0.98 11 24 0.0037 0.34 11.8 4.0 1 23 482 504 482 504 0.97 12 24 0.00013 0.011 16.4 0.8 1 23 513 535 513 535 0.98 13 24 3e-06 0.00027 21.5 2.6 1 23 589 611 589 611 0.98 14 24 0.016 1.5 9.8 4.8 1 20 617 636 617 639 0.95 15 24 7.5e-06 0.00068 20.3 0.2 3 23 646 666 644 666 0.97 16 24 0.0042 0.38 11.6 3.2 1 23 672 694 672 694 0.97 17 24 0.0002 0.018 15.8 1.3 1 23 924 946 924 946 0.96 18 24 7.2e-06 0.00066 20.3 6.9 1 23 956 978 956 978 0.98 19 24 5.9e-06 0.00054 20.6 0.9 1 23 984 1006 984 1006 0.97 20 24 6.9e-05 0.0063 17.2 0.5 1 23 1014 1036 1014 1036 0.97 21 24 0.024 2.2 9.3 2.0 1 23 1042 1065 1042 1065 0.94 22 24 3.2e-05 0.0029 18.3 1.0 1 23 1183 1205 1183 1205 0.98 23 24 0.00063 0.057 14.2 0.8 1 23 1211 1233 1211 1233 0.98 24 24 0.0023 0.21 12.4 0.6 1 23 1239 1262 1239 1262 0.96
Sequence Information
- Coding Sequence
- ATGTCGGAGGCAAATTACGGCTTGAGCAACATCCCTACATTCGTAGCACTACCAATCGATGCATTTGAAACAAATCCGTTGGAAAAAACCGACCAGTTCCGCGTAATCAAGAACGCAATTATAAAAACATTATCTGACGGTTCTTTGTGTATAATAGACGCAAACGATTGCCAGCAGGTTACACAAACCGAGCCTACGATTCAATATGCTGTTGAAAAACTTGTCAGCGATGCGCGTGTTGTGGAAGACGAGGCCCCAGCGCGGATATCCCCAAAACCCGTGTACAAATGCACCAAATGCACTGAAGTGTTTGATAAAATTGTGTCGTACAGAAAACATATGATGTGGCATAGGCAAGCTAAAAAGTACAAGTGTGACAAGTGTTCAGCAGGGTATAATGTAGAGACTAACTTGAAAATACACATGGCTATGCACGGGGAGGGCAAACCCTCATGTCCCATTTGCAGCATATCATTTCAAAGACTCGCAAGTCTCAAGTCCCATTTAATGATACATCAAGTGGAGGAGTTGTACACTTGTGAGGAGTGTGCTGCTGAGTTTGAGAAAGAAGAGGAGCTTAACAGACACTTGCAGACTCATTTGAATAGTAGTGCTCAGGATGACGGTTGCTTGATTTGTTCTTATTGTAACGTGCAGTTTGAGGATCATAAAAGCTACAAGGAGCACATATCACACCACATTAAGGTGAAGAAAATGGTGCTGTCGGGAAAAAAGTCGCGCAAGACCCACAGCAACAAAGACCACCCGCACGTCTGCGACATTTGCTCCAAACGCTTCTCCCGAATTTCGCTTCTAGAACGTCATCTTCGCGTCCACAGCGGCGAACGTCCCTTCGTTTGCGAGCACTGCAACCGCGGTTTCAATCAAAAGGGGACCCTCCAGATCCACCTGACCAAACACACGGGCCTAAAACCCTACCAATGCACGTTGTGCTCCGCCAAATTCAACCAGAAAGGAAATCTCCGCGTGCACGTGGAAAAAACCCATACAGCACCAATGCCGGGGATTAGAACGTACAAGTGCTCGCATTGCAATTGCATATTTAAGAAGGTGGCGTCGCTCAACGTCCACATAACTAAAACGCACACCAACGAGGATTTGGGCGACGTCTCCAGCGTAATGACGCGCCTGAAAGAGCTGGAGGAGCAGACGACGGTGACGCCCGACTCAAAACTCGAAGAAAGCGCAGAGGTCGAGCAGAACAAGAAAATGTTGGACGAGATCGGGGACGGGAAGGCAGCGTCTAATGTTAGTTACGTGAAACTGGCGGAGTCGTTTCTTGACGGGACCGTGCGTCGATATCTAGTGATGCAAAGGCGAGTCGACGACGTCAGGTGGTATATTTGCAGCTATTGCAGCAAGGAGTTCAAGAAGCCCTCGGATTTAATACGTCACACGCGCGTACACACGAGAGAAAAGCCGTTCGTTTGCAAGCAGTGTGGTCAATCGTTCTCGTTAAAGTCGACCCTTTTTTGCCACGCTAAGACTCACGTCAGCGGCAACAACCACAATAACTACTCGTGCGCTGTGTGTAATAAGAAGTTCAGGTCTTTGGGTTCGATCAACATGCATTTAAGAAGACACAAGGAGAGAGAGTACAAATGTGTGCCTTGTAACAAGTGGTTTAGCTCGGTTTTGAAAGCAAAGTTCCACCACAAAGAGGTGCATGGCGCTATGAAACCATCCCCGTTGGACACTCCCGACAGTGTGCTTCCTATTTCCCCGAAACCAGTCGAATCGCAATTCCAGTGCCACATATGCCACGCTAGTTTTAGCAGATTGCCCAACTTGAACCGCCACATCCTCCTTCATGGTAGCGAGAAGAAGTTCAAGTGCGAACAGTGCTCCAAATCGTACCATACAGCTTACGCTCTCAAAGTGCACCGCTTGTGTCATGGGGTGCGCAATTACGGGTGCAAATTGTGCGGGAAGAAGTATGCGACGCCCTCTTTGCTGAAGAGGCACGTGGCTACTCACAGCACCGTTAAACCGTATGTTTGTCTGTATTGCAGCAAAAGCTTCAGGACTCTGGTGATGTGTAAAAAGCACATGGACGTCCACAAGAAAGTTAGTTTGAAAGTGGGCCAGTCTGTTAAAATATTGGAAACATCAACCGTTGAAGAAGCCGCTAGTTGCATGGATAAGTTGTTGGGTCAGGATAATACAGAAACGGTGACGGCAGGGATGGATTTAGTGGTGCAGGATACTGGGAAAGTCAACGAGTCTCAGATAATGGAACCGAGCGCTAATAACGCCCCAAATCAGATTAACCAACAATTCTACGAAATCGCACCAAATTCAATCCAAATCCTCACGAATGCCAACAAGAACATAATCCAAGATACAAGTAACGTCCAGACGATTTACATCAACTGCGAGGACTTACAGCTGAGCGACAATCTTTATACTCAGAACGGCGACTCGATGTTGTTCAATCCCCTAAACGATCTCTCCGACCCGAACGCGTTTAATATAGACACAATTAATACCGAATTTGAGTCGCAAAGCACCGAAGTAATAAgcgacgaaatgattaaactgGACAAAGGCAAACCCGAGCGACCGAGTCTAGTTTTGGGGGACAACGTTCTCGCTACGAATTTGCCACTATATTCGCAGCCGGATCTCAGCTTGCTTTTTAATCTAGACCCGGAATTCGACAGCAACAATTTAAACTTGCCGGATATTCGATTTAACGAACCTCCGGTTTCGGGCGAAGAACCGAAGCAAGATTCGGCGGAAAAAACTTTTGCGTGCGCCAAGTGCGACAAATCGTTCCCCAACGAAAAGTCGTACACAAAACACTCGCAAAGTCACAAGAGCAAGGCGGAAAGGTCGTCCGGCCACCAATGCAGTTTTTGTCACAAGTCGTTCAGGAAAGTCTCggatttgACGCGCCACATCAGAACACACACGGGGGAGCGTCCCTTCGCCTGCGACAAATGCCCCAAAACGTTCTCTTTGAAATCAACCCTTTTGGGACATCAGCGCACTCACAACCCCGTCAGTAACAAGCCGTTCAATTGCGTCGTTTGCAATTCGTTTTTTTCGTCCAAATCTAGCTTGAAAGTGCACATGGCCGTTCATACGGGCGAAAAAACCTATGAGTGTAGTCTCTGTTCCACGAAATTTCGAACGGCGGCTCATAAAAAGCTCCACGAGAACAATATTCATCTGAAGCCGGCTAAGACGCGCAAGAACAAAGTGACGAATTTGTTGGAGTCGGTGGCCATGGACATCGTGAACCAGGAGAGTGACCAAATGGGGTGTGTGACCGACTTGGACAACGTGCTCGTAGTGCAAGACCAGATAGGGCTCCCGGGAGCGTCGTTGAACCTCTTAAGCGACCAAGACCAAGACGTCCAGCTCGAACCGATAATTTTGCAACAGTTGCAAACAAATTTTCTTTTACAAGACAATTTAATTCCATCGTCGTTCATACAACTAGACGACGGGACGCTTCTTAACGTTAAAACAGTCGAAGATGTGGACAATTCAAATTTACCGCTAGAAAAGCCAAGGAATTTTGAGTGCGACATTTGCCAGAAGAAATATGCCTCGAAGGACGTGTTAAGAAAGCACCGGAAGATACACGGAGTTGATAAGACGTATCGATGTTTGAAGTGTCAAAAAGGCTTCGACTTGGAGGAGCAGCTGCAGAAGCACGAGAAAATACACGAAGGGTATCGACCTTTTGCTTGTTTGTATTGCGCTAATAGCTTTACCAAGCAGCAGAGTTTGGCTACTCATATTAAGAGGATTCATAACGTGTCGCCAACTGGCAATTGA
- Protein Sequence
- MSEANYGLSNIPTFVALPIDAFETNPLEKTDQFRVIKNAIIKTLSDGSLCIIDANDCQQVTQTEPTIQYAVEKLVSDARVVEDEAPARISPKPVYKCTKCTEVFDKIVSYRKHMMWHRQAKKYKCDKCSAGYNVETNLKIHMAMHGEGKPSCPICSISFQRLASLKSHLMIHQVEELYTCEECAAEFEKEEELNRHLQTHLNSSAQDDGCLICSYCNVQFEDHKSYKEHISHHIKVKKMVLSGKKSRKTHSNKDHPHVCDICSKRFSRISLLERHLRVHSGERPFVCEHCNRGFNQKGTLQIHLTKHTGLKPYQCTLCSAKFNQKGNLRVHVEKTHTAPMPGIRTYKCSHCNCIFKKVASLNVHITKTHTNEDLGDVSSVMTRLKELEEQTTVTPDSKLEESAEVEQNKKMLDEIGDGKAASNVSYVKLAESFLDGTVRRYLVMQRRVDDVRWYICSYCSKEFKKPSDLIRHTRVHTREKPFVCKQCGQSFSLKSTLFCHAKTHVSGNNHNNYSCAVCNKKFRSLGSINMHLRRHKEREYKCVPCNKWFSSVLKAKFHHKEVHGAMKPSPLDTPDSVLPISPKPVESQFQCHICHASFSRLPNLNRHILLHGSEKKFKCEQCSKSYHTAYALKVHRLCHGVRNYGCKLCGKKYATPSLLKRHVATHSTVKPYVCLYCSKSFRTLVMCKKHMDVHKKVSLKVGQSVKILETSTVEEAASCMDKLLGQDNTETVTAGMDLVVQDTGKVNESQIMEPSANNAPNQINQQFYEIAPNSIQILTNANKNIIQDTSNVQTIYINCEDLQLSDNLYTQNGDSMLFNPLNDLSDPNAFNIDTINTEFESQSTEVISDEMIKLDKGKPERPSLVLGDNVLATNLPLYSQPDLSLLFNLDPEFDSNNLNLPDIRFNEPPVSGEEPKQDSAEKTFACAKCDKSFPNEKSYTKHSQSHKSKAERSSGHQCSFCHKSFRKVSDLTRHIRTHTGERPFACDKCPKTFSLKSTLLGHQRTHNPVSNKPFNCVVCNSFFSSKSSLKVHMAVHTGEKTYECSLCSTKFRTAAHKKLHENNIHLKPAKTRKNKVTNLLESVAMDIVNQESDQMGCVTDLDNVLVVQDQIGLPGASLNLLSDQDQDVQLEPIILQQLQTNFLLQDNLIPSSFIQLDDGTLLNVKTVEDVDNSNLPLEKPRNFECDICQKKYASKDVLRKHRKIHGVDKTYRCLKCQKGFDLEEQLQKHEKIHEGYRPFACLYCANSFTKQQSLATHIKRIHNVSPTGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -