Basic Information

Gene Symbol
nfxl1
Assembly
GCA_947095575.1
Location
OX352721.1:7457507-7459981[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 2e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 19 0.014 1.4e+02 2.7 0.7 4 10 169 175 168 175 0.97
3 19 3.1e-07 0.003 17.6 15.9 3 19 186 202 185 202 0.95
4 19 0.064 6.2e+02 0.7 3.7 1 9 227 234 227 234 0.90
5 19 1.2e-07 0.0012 18.9 13.0 3 19 239 255 237 255 0.91
6 19 1.1 1.1e+04 -3.3 0.9 6 10 280 284 279 284 0.86
7 19 2.5e-09 2.5e-05 24.3 13.3 1 19 290 308 290 308 0.99
8 19 1.4e-06 0.014 15.6 18.5 3 19 345 361 337 361 0.88
9 19 6.7e-06 0.066 13.4 19.0 1 18 395 412 395 413 0.97
10 19 2.3e-08 0.00023 21.2 16.9 1 19 422 440 422 440 0.99
11 19 0.00024 2.4 8.4 3.9 9 19 488 498 486 498 0.90
12 19 0.0015 14 5.9 7.1 1 11 508 517 508 518 0.96
13 19 0.31 3e+03 -1.5 3.3 14 19 547 552 547 552 0.85
14 19 0.18 1.8e+03 -0.8 0.3 8 12 568 572 567 579 0.80
15 19 5.8e-06 0.057 13.6 6.5 1 11 588 598 588 599 0.98
16 19 0.34 3.3e+03 -1.6 1.7 14 19 612 617 612 617 0.87
17 19 0.00033 3.3 8.0 12.9 3 18 629 645 628 646 0.82
18 19 2 2e+04 -6.5 3.4 9 13 652 656 652 656 0.71
19 19 1.3e-05 0.13 12.5 12.6 1 18 687 705 687 706 0.89

Sequence Information

Coding Sequence
ATGGCGCGCCGATACAGAGACGCTGCGGCGAAACTGCAACAAAACGTGCAGAAACACCTTAAGGATATGAAGGATCTATCTTCTTCCGAGGATGAAGAGCCCTACGAGTCAAGTGTCATTGAGGGGATGTTCCAGAGTTATTGGCGAGGCGGTGGGGACACCCAGATGCTCAATAGAACCAAGAATCTTCTGGAAGAGGCTATCAGCGGGCGCTCGGTAGCTTGTTTGATCTGCATCAGTTCCATCAAACGAATCCATGCCGTCTGGACCTGTGACCACTGTTACTCGTACTTTCACCTCTCCTGTATCCAAAAATGGGGTACCGATAGTATAAGTTTGCGCAGTATTGTGCCCCAAGCCCCAATAAGCGTGTTCAAGCCACAGAAAATTGAATGGTGCTGTCCAAAATGTCGTAATTCGTATAGCAAAGAAGAAATACCGAGGAAGTACAGATGTTTTTGTAGCAAAACTGATAATCCACCTGTTCACCCATGGCTGATACCACATACTTGTGGGGAAGTGTGTGAAAAGAGGCTTTCAACTGGAGAGAACTGTAAGCACAAGTGTCTACTTCTGTGCCACCCTGGACCTTGTCCTCCTTGTCCTCAAACAGTCAATGGAATATGCTACTGTGAAAAAGAACGTAAGAAAGTCAGATGTAGTGCAGCCAAATGGTCATGCGGCCATCAGTGTCAAAAAACATTGCTATGCCAGGCACACAAATGCAAACTGTTATGTCACGAAGGAGAATGCCCTCCCTGCACTTACACCAGTGTTCAAACTTGTCAGTGTGGAGCAGAAAAGACCAAAAGACCTTGTGATGATCCCTTCTGGCACTGTAAAAAACCATGCAGCAAACCTTACTCATGTGGCTATCATAAATGTGAGAAAATTTGCCATTCAGGCAGCTGCGGGGAATGCCCTAACTCTGGCATGAGCTCCTGTCCATGTGGAGCAAATGAGCGGTACATCCAATGTCCTGATACCATTGAAACATGCCTTGGAACATGTGGCAAGAAACACTTTGACTGTGCTCATAGTTGCCCAGAGAAATGCCATAAAGGACCTTGCCCTCCTTGCCAAGTATTGATCCAAAAGAAATGCCAATGTTTAACCCACACAAGATCTTTACCTTGCAGTAAAGAGTTCAAATGTGACACAAAATGCAGAGGAACTCGACCGTGTGGAAAGCATGGTTGCTCAAGGAAATGCTGCAATGGTAACTGCCCTCCGTGTGAAAAAGCTTGTGATAAGCCTCTTCAATGTGGTCGCCATAAATGCACTACCATCTGCCACCATGGACCTTGCTATCCATGTCCCATGGAATCCAAGGTTACCTGCAAGTGCAAGGAAACTTACATAACTGTTCCATGTGGAAGAGAAAGATTCACCAAACCACCAAAATGTCACCTGCCCTGCAAGGTTAAGTACAAATGTGGTCATGCTGAGGAAAACAAGCATACTTGCCATTTTGGAGACTGTCTTCCATGCAAAGCTATCTGTTACAAAACTTACCCACAATGTGGCCATGAGTGCAAGGCAATTTGTCATCAGTTCAAAGCAGTTGTCTTCAAGCAGGTTGAGAAACCAGCTACTCCTTGGGAAGTTCAACCACCGAAGACCAAGATCATGACTTTGGAATGTCCTCCTTGTACTACGCCTGTGACTGTCATATGTTTTGGAGAACATGAGACGGATACCCAACTGTGCCACGAAGCAGCCCGTAGACCTTGCGGCAGGGAATGTGGAAAACCTCTGGCTTGTGGAAACCACAACTGCACTCAGCTCTGTCACTTGTATAGCCCAGATCCTAACTACCAAAATGTACCATATGATTGTAAACCTTGTAGCAGAGAGTGTATGAAACCGCGCCCAGAGAAATGTACCCATAAGTGTGCTAAAAGCTCTTGCCATCTTGGCAGCTGTCCCCCATGTGAAGTATTAGAACGCATTCCGTGCCACTGCGGCATTACTGAGCTGTACCTCCGCTGTAGAGAATACTCTACAGCTACAGAAGAAATGCTATCTTGTAAACAGCAGTGCCCAAAGAATTTAGTTTGTGGTCATCGCTGCAAAATCACTTGCCATCCAGGTGCCTGCGGTAACCAAGTCTGTACCAAGAAGACCAAAATTCACTGCTCTTGTGGCAACATAAAGAAAGATGCTCCCTGCAATGCAGTCAAAAATGGCGAAGCTACAGTTGAGTGTGATAATACTTGTGAAGTTAAAAAAGTAGCAGCAAAACTGGAGAGTGAGAAAGAGCATCAAAGGTTGAAGCAATTAGAAGAAGAAAGGAATAAGAAAGAGTTGGCTGAATACGAGTGGAAACTCAGTGGGAAGAAGAAGAAACATAAGGAAAAGAAGGTTGTGATCAATAAGGATGAAAGGAACTGGGTGCATCGACACTGGTTGTTAATTTTGTCTGTTTTAGTAGCAATACTAGCAGTAGCTTATATTATTTTTTATAATCTGTAA
Protein Sequence
MARRYRDAAAKLQQNVQKHLKDMKDLSSSEDEEPYESSVIEGMFQSYWRGGGDTQMLNRTKNLLEEAISGRSVACLICISSIKRIHAVWTCDHCYSYFHLSCIQKWGTDSISLRSIVPQAPISVFKPQKIEWCCPKCRNSYSKEEIPRKYRCFCSKTDNPPVHPWLIPHTCGEVCEKRLSTGENCKHKCLLLCHPGPCPPCPQTVNGICYCEKERKKVRCSAAKWSCGHQCQKTLLCQAHKCKLLCHEGECPPCTYTSVQTCQCGAEKTKRPCDDPFWHCKKPCSKPYSCGYHKCEKICHSGSCGECPNSGMSSCPCGANERYIQCPDTIETCLGTCGKKHFDCAHSCPEKCHKGPCPPCQVLIQKKCQCLTHTRSLPCSKEFKCDTKCRGTRPCGKHGCSRKCCNGNCPPCEKACDKPLQCGRHKCTTICHHGPCYPCPMESKVTCKCKETYITVPCGRERFTKPPKCHLPCKVKYKCGHAEENKHTCHFGDCLPCKAICYKTYPQCGHECKAICHQFKAVVFKQVEKPATPWEVQPPKTKIMTLECPPCTTPVTVICFGEHETDTQLCHEAARRPCGRECGKPLACGNHNCTQLCHLYSPDPNYQNVPYDCKPCSRECMKPRPEKCTHKCAKSSCHLGSCPPCEVLERIPCHCGITELYLRCREYSTATEEMLSCKQQCPKNLVCGHRCKITCHPGACGNQVCTKKTKIHCSCGNIKKDAPCNAVKNGEATVECDNTCEVKKVAAKLESEKEHQRLKQLEEERNKKELAEYEWKLSGKKKKHKEKKVVINKDERNWVHRHWLLILSVLVAILAVAYIIFYNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00857272;
90% Identity
iTF_00738024;
80% Identity
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