Ecor007535.2
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- -
- Assembly
- GCA_947095575.1
- Location
- OX352721.1:6762546-6775150[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00023 0.011 16.2 1.7 1 23 347 370 347 370 0.97 2 13 0.053 2.6 8.8 4.1 2 23 376 397 376 397 0.97 3 13 9.6 4.8e+02 1.7 0.3 1 10 401 410 401 414 0.88 4 13 0.18 8.8 7.1 0.5 1 12 428 439 428 444 0.86 5 13 0.18 8.8 7.1 0.5 1 12 453 464 453 469 0.86 6 13 0.0045 0.23 12.1 7.5 1 23 478 501 478 501 0.98 7 13 0.00029 0.014 15.9 0.4 1 23 505 528 505 528 0.96 8 13 0.089 4.4 8.1 0.1 2 20 541 559 540 561 0.90 9 13 0.048 2.4 8.9 2.0 3 23 589 610 588 610 0.87 10 13 1.4 71 4.3 0.0 2 23 620 640 619 640 0.89 11 13 2.2 1.1e+02 3.7 1.2 1 10 646 655 646 655 0.95 12 13 0.0013 0.065 13.8 0.4 3 23 676 697 675 697 0.98 13 13 0.0003 0.015 15.9 2.4 3 23 714 735 712 735 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAATTAAAACTATGTCGCATATGTCTTAACAAAGATGTTAAACTATTTAAACTAGAACAGTGCAATTTAAAACAATATTACGAGCAGATAATGCGAAGCAAGGTTCAGTCAAAAGATGGGTTACCCCGCTACTTTTGCTTCGATTGTGCAGCATTACTCCACAAGTATCACAAATTCAAGGAGAAGTGTGAATATGGACAGAACGCTCTTAAAAAGCTGGCATGCAGTGGAGTTATGACTTACAATATTGTTGAAGATATAAGAAAAAACCATTCATACATACAACCATCTGCTGATTATATGAATGAGTCATGTGCAAAGCGTTGTAGAACCTTGAATATGAAGTACAAGGTGAATATTGAACCTCTTCAAATGGAGAATGTCATTGTAAATCCACTACCTGATGATGGAGAGCCTTTCAAATATGAGTATAACCCGGAGCCAGATCACGAGGAGTCAATGACTACAATGAAAAGTGAAATAGATAGTGAAATAGCAGAAATCTTAGAAGCGACCAGTATGGACTCCGTTTTCAAAAATACCACTGCCCCAAATGTACCAAAACCTGCTTCTGTGAACATAGACCATACAAAAACTAACACTGACATTGAAAAGAATAGTTCTACCATGGATATTACTCCAAAAATAGAAAATATTGGTCCAACAATAGAAAACAAATTGGATTTAAGAAAATTTTCTTTAGATTCAGATAAAGATGACTCTTCAAATGATTATAGCTTGGATTATGCTTCCAATGATTTAACTTACATGGATATAGATGAAACAGTGAATGAAGATAGTTTATATAAAAAGAAAAGTAACAGAACTAGCAAAAGAGTGGCTAAAAAGAAAGAAGATAAAAAAGGAGTCAAAGTGAAGGACCCTGATGAATCCCATAGGTTTGTAGGCATTATTCGAGAACCAAAAGGTGAACTTAGCAAAGGCAACTGGGAAACAAAGTTATTAACAGAAGATGAAGCTATGGACCAGTTTAAGAAGAAAGAATTTGATAGCAAGTACGAAAGAATGGAGTTCAAATGTACTCTCTGCTACAAAGGCTTCTCTAAAAACGATATGCTGTTGAGACATAATAAAATGTGGCATGAGAAGGGCGACAATGAATGCCGTTTTTGTCACATGCAGTTTAAATGGAAAAGTAAACTACAAGTACATATGATGAAGCATTATTATATCTATAAATGTCTACGCTGTGGCCTGCAGTTTTACCTAAAGAATGGGGCGGTTTTCCATGACGGTCACCACAATGGTGTCATCCACAAGTGCAAACACTGTGGAGAGGAATACACGCATGTAGCAGCATTCCATGACGGTCACCACAATGGTGTCATCCACAAGTGCAAACACTGTGGAGAGGAATACACGCATGTAGCAGCGTTCCATGACGGTCACCACAATGGTGTCATCCACAAGTGCAAACACTGTGGAGAGGAATACACTCACATATCCACATACTACACGCATCTGCGCACCTCTCATCGCAACGCTCACGCGTGTAAGATATGTGGTGCGACCTTCGTCAGCCAAACTGGAGTTGTTGTACACATGAAGAGGAAGCATGTTATACCTAGCAGTgaggaaccctctaccaacatCTACTGCCAGAAGTGTGATATATCCTTCGTATCACAGATAGCATTTGACGAACATCTGTCGCAGTCCAAAAATCATGAAGACGAAAACAAAGACATCAAGCGAACAAGAAGAAGAAGACGTGAGATTCTTGCGAACGCTGCTAGGTGCATTCATTGCAACAAGAAATTCAAATCTAAGACTGAGGTTAAATTGCATATAGTTGAGGAACACCCTGGGCAGAACAAGGTGGAGCGCGTTGTATGTGAGATCTGTGGCGCTGTGCTCTCGTCTGCGTATATAGATATACATATGAATAGACACACTCGTAAGAAGGTGTACCCTTGTCAAACGTGCGGCAAAGAGTTCCTATGTGTCACCAGTCATAATACACACCAACTGACACACAGCGGTGAGAAACCACATGGTTGCCCCATATGCCCTAAACGCTTCGGCCTCAAAGGGCACATGGAGGTTCATTACAAAAGGGTACATCTCAAGGAACCCTACCCTAAAAGCGTGCAAAAGCCCAAGCCGACCGACTGTCCGATTTGCCGCAAAACTTTTCAATCCCGGTCTCACATGGACACACATCTTCGAAGAGTGCATTTAAAGGAACCTTACCCTAAAAGGACATACAACCGAAAGAATAGAAATCGTCAAACCGAAGTACCACTGTACGCACCTATTCCTAAATAA
- Protein Sequence
- MSELKLCRICLNKDVKLFKLEQCNLKQYYEQIMRSKVQSKDGLPRYFCFDCAALLHKYHKFKEKCEYGQNALKKLACSGVMTYNIVEDIRKNHSYIQPSADYMNESCAKRCRTLNMKYKVNIEPLQMENVIVNPLPDDGEPFKYEYNPEPDHEESMTTMKSEIDSEIAEILEATSMDSVFKNTTAPNVPKPASVNIDHTKTNTDIEKNSSTMDITPKIENIGPTIENKLDLRKFSLDSDKDDSSNDYSLDYASNDLTYMDIDETVNEDSLYKKKSNRTSKRVAKKKEDKKGVKVKDPDESHRFVGIIREPKGELSKGNWETKLLTEDEAMDQFKKKEFDSKYERMEFKCTLCYKGFSKNDMLLRHNKMWHEKGDNECRFCHMQFKWKSKLQVHMMKHYYIYKCLRCGLQFYLKNGAVFHDGHHNGVIHKCKHCGEEYTHVAAFHDGHHNGVIHKCKHCGEEYTHVAAFHDGHHNGVIHKCKHCGEEYTHISTYYTHLRTSHRNAHACKICGATFVSQTGVVVHMKRKHVIPSSEEPSTNIYCQKCDISFVSQIAFDEHLSQSKNHEDENKDIKRTRRRRREILANAARCIHCNKKFKSKTEVKLHIVEEHPGQNKVERVVCEICGAVLSSAYIDIHMNRHTRKKVYPCQTCGKEFLCVTSHNTHQLTHSGEKPHGCPICPKRFGLKGHMEVHYKRVHLKEPYPKSVQKPKPTDCPICRKTFQSRSHMDTHLRRVHLKEPYPKRTYNRKNRNRQTEVPLYAPIPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -