Ecor015282.1
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- -
- Assembly
- GCA_947095575.1
- Location
- OX352725.1:1544804-1579632[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.7 1.9e+02 3.0 0.4 2 23 448 469 447 469 0.94 2 15 0.044 2.2 9.0 0.0 1 23 479 502 479 502 0.92 3 15 0.097 4.8 8.0 2.2 2 21 606 625 605 626 0.93 4 15 0.06 3 8.6 4.3 2 23 663 684 662 684 0.95 5 15 0.029 1.5 9.6 1.5 1 23 695 718 695 718 0.92 6 15 0.00017 0.0087 16.6 0.2 2 23 725 748 724 748 0.96 7 15 0.078 3.9 8.2 0.2 1 23 754 776 754 776 0.93 8 15 0.0097 0.49 11.1 1.8 1 23 782 804 782 804 0.98 9 15 0.59 30 5.5 0.0 2 19 815 832 814 835 0.89 10 15 0.21 11 6.9 0.1 1 23 913 935 913 935 0.97 11 15 2.3 1.2e+02 3.6 7.2 1 23 942 964 942 964 0.95 12 15 0.055 2.8 8.7 0.8 5 23 1038 1057 1037 1057 0.95 13 15 3.4 1.7e+02 3.1 0.2 1 13 1064 1076 1064 1077 0.89 14 15 0.0069 0.35 11.6 0.3 2 23 1078 1100 1077 1100 0.96 15 15 0.00093 0.047 14.3 0.5 3 23 1142 1163 1140 1163 0.94
Sequence Information
- Coding Sequence
- ATGATGTGGTGGCGAAAAGGTCCTCAGCTCAGCTTAATGCCACAGCATGTTGCCACACTGCAGCGCTGGTTTTCGGCTGACAGATCATCTCTTGGATATGATATTGATATATCAATACTAACAAAAAATCAGCCAGTCGAAATGACGGAAAACGTTTATCAGTTCCTCATAAATCTAGAACTGAATGACCCGGATATGGTCCAGAGTTATGATCAACATTTGGACCCCAACGATCAGCCTATCACTTTAGATGATGATCAACTGTACGTGCTAGATGATGGAACACAGATTAGAGCTTCACAGATTCATTTCGACAACGAAGATGCTCCGTTAGATCTCTCATTAGAAAAACTACCGTTCATCAAAGTTAATGATACCGATGATGTTGTCAAAGACGATGTATTTGAAGATGTCACTCACAAAATTATAGCTAGTCCTGTTCCTATAACAGATTCTAGTCCAAAGCACGGTTTTATAAACCACGTGCCTTTTAAACTTGTCTGTAATAATACTACTGGCTTTGAAGCTCAGTTCACGAAATATCTTGAAACTAGTAACAAAACTTACGCAACACTCAGCACTGTCACGAAGAAGAACAAGTCTCCACGGAGTCTGATAAGAGATAACTTTAATGATAAAGAAGAGTTCAGGTATACACGCGAAGAGATCTTAAATATGCTGAAAGATTCTCCAGTAACCAGCATCCCGTATGAGAACAACGAGAAAAAGCACGTTAGGAAGACAGATCCGACTAAAATGGTACAGAAAACAAGCAGCAAAGCGATAGATATTGAAGGATTAGTTATAGGTGATGGGGGGAACAGAAGCTGTTTTATATGCGGTAAAAATGTCAGCAATGATAAGATATATCTCTTCGACAAAGAAGATCAGAAGATACACAAATGTTCACCACAGAAGAAAATGTCAACGCAGCTCAAAATTATATGCGAAATTTGCTTGAACGATAACTTCAAACCATCTAGAATGAAAGGTGCTAACCAATTTTTAAACTCTGATGAGTATCTTGTGATAAGAAATAACCAACAATACATATTTCAAAAAACGAAGAACTTTAAATTTCGAACGGATACTATAGACAATAAAAAAAGAAAGAATGATGAGTTTGTGAAATTCGAAATAGGTTCCGACGGAGAGATTGTTACTAAACCCATAGACGATGATGTAATTCTGGTGCACGATGGCAGAAAGGATAGTTCTAGTGATGTAGAGATTGTAGAGGCGGAAACGGAAGTTGACAAGATCATAGACAACTTGGAGGAGGCGGATGAGGATGTTAAAGTTTTCTTAGGGAAATATGAAGGGGATGAAATCATAGAGCTTAAATGCAGATTTTGCCAGCACATATTTTCGGCTGTATCAGAAGTGATTGAACATGGGGAAACACATAAGCATGTTATTGAGGATGACGTGGTATTTCCGTGTCCTTTATGCGATTATGGATACGCAACCTTCCAATGGTTGAGGGGGCACCTAATAGCTGCACATAACAAGAAAACAGATAAAACTACGAATTCTACTAAAGCTATGAACGAATCATCATCTTCTATAACGACACAGATTCGAAGCTCTGGCTGTATTGAAACGCAAGGTGCAGAAAATATTTCTGGAGAAGCTAAGAACTTGGATCCCAATAAATTGAAGAATATACCGGATATAATAATCAAAACGGAAGTGAAGCAAGAGGCGATCAGTAGTGATGACGAGATATGGATAGTGCAGGCAGCCGATACTGATACCCATCTTAATCAGATATTGGAGGCTGCGAAGCTTGATGACAATGAAGATAGAAACAAGAAATGTCACAACTGCAGCAACACATTTCCATCATCAGAAGCTCTGGCTGCTCACAAGTGCCGTGGAAAGAAGCGTAAACCTGATGATGATACAGTGTTTATACCCACCGAAGAGGATTTTATCAGGAGGCAATGTAAGAAGATGAAAGACCCATCTGAGCCTCAAATCGTCACCTGCCATAATTGCAACCAATCATTTACATCCAAAGTTCGGCTGAAATTTCACATGCAGTTTCACGAGAAATCATTGACGATGACAGATGGACAGTACAAATGCGCGCAATGCGATGGTACGTTTGCAACTGAAACACAGTTGTTTGATCATGTGCATTTTACCCATGAGAAGACGAGGAGGTGGCAATGTCCAGTACTAGGTTGTGGAAAAACGTTTTACCTGAGGGCCACACTTACAAAACACAGTCGCATCCACACAGACACGCGAAGGTATGTTTGTGTGACGTGTGGTAAAAGGTTTCTGGATAAGCAGACTTTGGACGAACATGGAGTCACACATTTACAGATCAAACCATACCAATGCCATATCTGCTTGAAGCAGCTAACCCGTGTCTCTCGTCTCCGTATGCACGTGAGAGCTCATGAAGAGGCCCTGGCTCCGACCCTGCTCCTGGTCTGCAGGGTGTGCCGCAGAGCATTCAGAGATAGCCAGGAGGCACAGGAACATGCCGCAAAGTCGACAGAGTGCCTGGAAACAGTAGCAGGTGAAGTTAAGACCGAGGAAGAAACCGCTGTTCAGTTATCACCTACCAGCGGGATTGTTAGAAAGACTATACAGGTTATTGAATGTCCTTCTCCCAAGCTCCGCGTCTCCCGACAAGTAGCGTCCCCTCTTGCAGCGCCTCTGCTGTCCACGTTAACAGATGAGGCTATACCATTGATAAGAGTTGTGGAGGTCGAGAAGGCTTTCCGCTGTGAATACTGTGAGGATGTCTTCTACATCGAAGATGGACTGAACATCCACCGTGCTATACACAAAGGTGTCAAAAATCCCTTCACATGCCACATCTGCAAAGTCAGCTTCGCAACTTACTCCAGATGTACAACCCATAAGACCACACATGGGTTCTACAAGCGACCAGCTCCAGGGAATGATGTTACCAGTGTGGTTGGTTATGGTGATTTTCCAACTGTCAAGCATTTTCTATGCGAGATTGTTGAAGACACTGATGAGTATTTCCCGATCCTATCAGATGACAACAATATAGACATAGTGCCTGAACCTGATATTGAATCATCAGATTCATCTGCATCTGCCTTAGTAACTGCCATCAGATCTAATGATTGTGGTCGGTCTTACCTCCACTGGACGTATCTACAAGTACACAGACGGATGAAGCATCCAAATGAGAATTATCTTCACAGTTGTAATCAATGCGAGATGACATTTCCTAACAGAATACCCTGTCGAGATTGCAACGAAGTTCTGCCAAACAAAACTGCGCTCTATAAACATAGGAAGAAGGAACATACTGGCGTGTCGATGCAAGATCTCAACACTAGTGTTATCACCGGCTCCGCTTGCACTAGTCAAGGAGATAGAGTAACAGCAATGCGCACGAAGCTGTTGCAGTACGGCGTGCGCGCGTGGGCGTGCGCGCGCTGCCCCAAGCGCTTCCGGATCCGGTCCGAGTTGCGCGCGCACACGCGGCTCAAGCATCCCGCCTTCATCGCTGTACTCGAGGTTCAAGGAAGAAACATAAGTCCAGAGGATGCGATAAATACAATAATTATGAACAACATCAGTCAAGAAAGAGTCATCGAAATACATGTGATGTCATTTGCCAAGGGTGCTACAAGCATAGTGCCATCTAGTGGACGCGCTTTGGCCATGCTTGGGAATGTACCGCGGACACAGATTACCGTTCTCAGACAAACCAACCCGCAACCACACTTTGTGAATCCGATGGAGTTCCATCGCAGGATGATGGCGAAGAACCCTAGAAGACCGGCCATTCTTCGCTCCGAGTGTCCTATCACTGAAGCTAATGCACAGGTGGATTCAAAGTCAAAGTCAAAGTCATCATCATCTTCCTGCCCTTATCCCACACTAAGTCGGGTCGGCATAACAGGTTTTTGA
- Protein Sequence
- MMWWRKGPQLSLMPQHVATLQRWFSADRSSLGYDIDISILTKNQPVEMTENVYQFLINLELNDPDMVQSYDQHLDPNDQPITLDDDQLYVLDDGTQIRASQIHFDNEDAPLDLSLEKLPFIKVNDTDDVVKDDVFEDVTHKIIASPVPITDSSPKHGFINHVPFKLVCNNTTGFEAQFTKYLETSNKTYATLSTVTKKNKSPRSLIRDNFNDKEEFRYTREEILNMLKDSPVTSIPYENNEKKHVRKTDPTKMVQKTSSKAIDIEGLVIGDGGNRSCFICGKNVSNDKIYLFDKEDQKIHKCSPQKKMSTQLKIICEICLNDNFKPSRMKGANQFLNSDEYLVIRNNQQYIFQKTKNFKFRTDTIDNKKRKNDEFVKFEIGSDGEIVTKPIDDDVILVHDGRKDSSSDVEIVEAETEVDKIIDNLEEADEDVKVFLGKYEGDEIIELKCRFCQHIFSAVSEVIEHGETHKHVIEDDVVFPCPLCDYGYATFQWLRGHLIAAHNKKTDKTTNSTKAMNESSSSITTQIRSSGCIETQGAENISGEAKNLDPNKLKNIPDIIIKTEVKQEAISSDDEIWIVQAADTDTHLNQILEAAKLDDNEDRNKKCHNCSNTFPSSEALAAHKCRGKKRKPDDDTVFIPTEEDFIRRQCKKMKDPSEPQIVTCHNCNQSFTSKVRLKFHMQFHEKSLTMTDGQYKCAQCDGTFATETQLFDHVHFTHEKTRRWQCPVLGCGKTFYLRATLTKHSRIHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPYQCHICLKQLTRVSRLRMHVRAHEEALAPTLLLVCRVCRRAFRDSQEAQEHAAKSTECLETVAGEVKTEEETAVQLSPTSGIVRKTIQVIECPSPKLRVSRQVASPLAAPLLSTLTDEAIPLIRVVEVEKAFRCEYCEDVFYIEDGLNIHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPAPGNDVTSVVGYGDFPTVKHFLCEIVEDTDEYFPILSDDNNIDIVPEPDIESSDSSASALVTAIRSNDCGRSYLHWTYLQVHRRMKHPNENYLHSCNQCEMTFPNRIPCRDCNEVLPNKTALYKHRKKEHTGVSMQDLNTSVITGSACTSQGDRVTAMRTKLLQYGVRAWACARCPKRFRIRSELRAHTRLKHPAFIAVLEVQGRNISPEDAINTIIMNNISQERVIEIHVMSFAKGATSIVPSSGRALAMLGNVPRTQITVLRQTNPQPHFVNPMEFHRRMMAKNPRRPAILRSECPITEANAQVDSKSKSKSSSSSCPYPTLSRVGITGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -