Ecor004368.1
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- -
- Assembly
- GCA_947095575.1
- Location
- OX352727.1:1962123-1963693[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.18 8.9 7.1 0.2 3 23 56 77 55 77 0.95 2 12 0.12 6.2 7.6 0.0 2 23 102 124 101 124 0.93 3 12 0.22 11 6.8 0.6 3 23 149 169 148 169 0.97 4 12 0.00012 0.0059 17.1 0.6 1 21 173 193 173 194 0.96 5 12 3 1.5e+02 3.2 1.3 1 23 235 258 235 258 0.91 6 12 0.24 12 6.7 0.1 2 23 284 306 283 306 0.95 7 12 0.0035 0.18 12.5 0.9 2 23 330 351 329 351 0.94 8 12 0.0014 0.069 13.8 0.0 1 23 355 378 355 378 0.97 9 12 0.18 9.2 7.1 0.5 1 23 382 405 382 405 0.97 10 12 5.4 2.7e+02 2.5 0.1 9 23 420 435 410 435 0.85 11 12 0.00011 0.0055 17.2 3.0 1 23 444 467 444 467 0.97 12 12 0.0067 0.33 11.6 0.9 1 23 477 500 477 500 0.90
Sequence Information
- Coding Sequence
- ATGCTCGAGAGGCCCATATTGGAAATAAGCGGACGTAGAAAGGGCGAAACTGACGCAAAAAAGAAAATAGTCCTTGTATGCCAGACTCCACAGAGGCGTAATGCCGAACTCATTCTCAAATATTCGACCGCGTATCCATTTAAAACTCGTTTTAGTAGGATTCTATGCGCTCTTTGTCATGAGGAGTACAACGCCATGTCGGAATTACGGTATCACATGGCCATCGATCACGTTAATTCAGATTATAGTAACGTTTTCTACAGAATAAACGATAATTTAATTCATGTAGACATAACAGATTTAAAATGTAAAATATGTTCTTTGGGAGTTCCTGATGTAGACTCATTGATGAGTCATTTGTCCCAGGCACACCAAAAACCTGTAAAATTTAATGCCCGTTTTGGAGTACTGCCTTTTAAACAGAATTCAGATAACCAGTGGTTATGTGTTTACTGTGAGAGGTATTACACTGAATTTTTATCATTTAAACGTCATATAGGAACACATTTTATGAATTTCTCTTGTGATAAATGTGGCACTTCTTTCGTGTCTGACCATGCACTTCGTGACCATCAGCGACAAGTGAAATGCTTCCGAACAGCTTATCATCCGCGTAACGGTACATTCATGAGATCCCGCGTTAATGCTGAAATTATCTTACAATGTTCCACTGCTTGCCCTTTCCGAACGTGGAAAAACAATTTCAATTGCGTGTTTTGCCGCATTCAAACAAATGACCCTTGCAGTTTAAGAATGCACGTTGGTTCCCGTCACGCTAATTATGACGTACAAGCTGCCTTTTATAAAAAGCTAGGGAAAGACTTTCTCAGCGTAGATATAACTGATCTTCAATGTAAGCTCTGCTTTGTGCCAATATCAACAATCGATGCTTTAACAGACCACTTGAAAAATGATCATCAGCAACCCTTAAATTTAGAGGCTCAGCTAGGTTTACTACCCTTTCGATTAAATGATGGTGCTGTATGGAAATGCACTATCTGTCCTAACCAGTTCAAAGACTTCATATCGTTGAAAAAACATACATCAGATCATTTTCAAAATTATGTTTGCGACGCATGTGGCGAAGGGTTCATCACGGAGTCTGCAATGATAGCGCACACAAAAATACCACACGAAAATAAATATAGCTGCAGTAGATGCATAGCAACGTTTTCATCCTTGGATGAAAGAAATATCCACGTTAAGACACAACACACGTCGATGCCGTATATGTGTATCTACTGCACAGAGAAGCCACGGTTTTCCAATTGGGAATTACGAAAGAAACATCTTATGGAAGTACATAACTATAGAACCGGAGCTGATAAATATGAATGCACCACCTGTCAAAAGACATTCAAGACCAGATCTGGAAAATTCAATCATATGGCGAGGACCCATAAAATTAAGAAGGATGCGGAGCTAAATTACCCTTGTATTAGTTGTCCGAAAACGTTCACAACCAAACTGTTTCTAGACAAACACATGGCTAAGAAGCATTTTGACTCATGA
- Protein Sequence
- MLERPILEISGRRKGETDAKKKIVLVCQTPQRRNAELILKYSTAYPFKTRFSRILCALCHEEYNAMSELRYHMAIDHVNSDYSNVFYRINDNLIHVDITDLKCKICSLGVPDVDSLMSHLSQAHQKPVKFNARFGVLPFKQNSDNQWLCVYCERYYTEFLSFKRHIGTHFMNFSCDKCGTSFVSDHALRDHQRQVKCFRTAYHPRNGTFMRSRVNAEIILQCSTACPFRTWKNNFNCVFCRIQTNDPCSLRMHVGSRHANYDVQAAFYKKLGKDFLSVDITDLQCKLCFVPISTIDALTDHLKNDHQQPLNLEAQLGLLPFRLNDGAVWKCTICPNQFKDFISLKKHTSDHFQNYVCDACGEGFITESAMIAHTKIPHENKYSCSRCIATFSSLDERNIHVKTQHTSMPYMCIYCTEKPRFSNWELRKKHLMEVHNYRTGADKYECTTCQKTFKTRSGKFNHMARTHKIKKDAELNYPCISCPKTFTTKLFLDKHMAKKHFDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663452;
- 90% Identity
- iTF_00633129; iTF_00663452;
- 80% Identity
- -