Ecor015786.1
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- -
- Assembly
- GCA_947095575.1
- Location
- OX352726.1:5041976-5054186[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00064 0.032 14.8 3.5 1 23 270 292 270 292 0.97 2 11 0.65 33 5.4 3.3 1 10 298 307 298 311 0.93 3 11 0.00082 0.041 14.5 3.0 1 23 521 543 521 543 0.97 4 11 5.9e-05 0.003 18.1 2.3 1 23 552 574 552 574 0.97 5 11 0.00023 0.012 16.2 0.4 3 23 582 602 580 602 0.91 6 11 0.00021 0.01 16.4 2.4 1 23 608 630 608 630 0.95 7 11 6.5e-05 0.0033 17.9 0.9 1 23 636 658 636 658 0.95 8 11 0.0051 0.26 12.0 9.1 1 23 664 686 664 686 0.98 9 11 9.6e-05 0.0048 17.4 7.7 1 23 692 714 692 714 0.97 10 11 3.2e-05 0.0016 18.9 1.8 1 23 720 742 720 742 0.93 11 11 0.00048 0.024 15.2 1.1 1 18 748 765 748 765 0.96
Sequence Information
- Coding Sequence
- ATGATCCTCAATCATTACTCGTGTGGTAAACAGCCAAGCGAGGAAGACAAGGTTCTCCGCTACGCAAACGCAATGGCTTTGGCTAGCTCTGTGTGCAGAGTGTGTTTAGCCGGGAATATCAGGATGCTGTATATTGAAAATATGCACCTCATACAGTTATTTGAGAAACTTGCAAACTCAAAGGTGAACATAGAATCAGATGCAGGGATGCCCAGCACAGTATGCTATGTCTGTCACCGACAGCTGCAGAGATGTCACCAGTTCTCCGACATGGCTCGCAGATCCGACCGAACCATGCGTGATCTGTTGCACAATAATATTGAGGTAACATACAGTACGATCACAATGATGTCTCTGGCACCAGTACCAACCTTATCGGTGGCTCCTATACAGCACATGTCTATGATTAATTGTTTATACACTACGGGTACTCCTGTCACTGTCAAAGAAGAACAACTTATTGTGGAATTAGAAGAAACACCTGCATCTGAAAAAACAGTGACAGGTGCTATTTATTATTCAAACACTTCAAGTCCTTATGTCCCTGTTAAGGAAGAACAACTTGTGAATATAGAAGAAATCAACGTAGAGGATTTTCAGGTGACAAACAATACTGGTTATTCAAACACTACAAGTCCTCTTGCCAATGCCAATAAAGAGCAATTTGTGAAAATAGAAGAAACAGCTGAAACTGACTTTTTACAGGTGACATCTGTTGAAGATGCTGGTGTTATTGACAGTTCAATTGAATTATGTGAAGAAAATATAGATGAAGTGAAGAATGAGCAAGCAAACATTCATTTGTGTTTTTGTTGTGATGTGTGCAACAAAAAAGTTTTCTCTAAATATCAGTTGATAAAACATTTAAAAGTCCACACTAGTGTGAAGACATTTACCTGCAATGAGTGTGATAAAACATTCATATGTAAAAGTGTGTTGCCAAGCGAGGAAGACAAGTTTCTCCGCTACGCAAACGCAATGGCTTTGGCTAGCTCTGTGTGCAGAGTGTGTTTAGCCGGGAATATCAGGATGCTGCATATTGAAAACATGCACCTCATACAGTTATTTGAGAAACTTGCAAACTCAAAGCTGAACTCAGAATCAGATGCAGGGATGCCCAGCACAGTATGCTATGTCTGTCACCGACAGCTGCAGAGGTGCCACCAGTTCTCCGACATGGCTCGCAGATCCGACAGAACCATGCGTGATATGTTACACAATAACATTGAGGTACTGAGCTACATTTTTGTATCAATCATGTTTCCGATAACATGCAGTACAATCACAATGATGTCTCTGGCACCAGTACCAACCTTATCGGTGGCTCCTATACAGCATACCTCTGTGATTGATTGTTCATACACTACGGATACTCCTGTCACTGTTAAGGAAGAACAACTTGCTGTGGAAATAGAAGAAACACCTGCAACTGAAGAAACAGTCTTTGGGGAATTACAGGAAACACCGAATGAAGATACTAAAGTTATGGATGGTTCAATTGAAATATGTATAGAAAACGTAGATGAAGCAGAAAATGAGCAAACTAATAGCCATTTGTGTTTTTATTGTGATGTGTGCAACAAAAAAGTCTTCTCTAAACATCAGTTGATTAAACATTTAAAAGCCCACATGTCTTTATACCAACTAAAGACACATTCCTGCAACCAGTGTGATAAAATATTCACTTGGAAAAGTATGTTGGTTAGACATATGCGATTACACACTGGAGAAAAGCCATATTTATGCATTCAATGTGATAGAGCATTCGCTCAAAAGTGGTCTTTGACAAGTCACATGCGATTACACACTGGAGAAATGCCCTATTCATGCATTAAATGTGATAAATCATTTGCTTATAACCATCAATTAACAAGTCATATGCTATTACACACTGGAGAAAAGCCATATTCATGCATACAATGTGATAAAGCATTTGCTTATAAAAATCAATTAACAAGTCACATGCGATTACACACTGGAGAAAAGCCATATTCATGCTCTCTATGTAATAAAGCATTTACTCAAAAGTGTCATTTAACATGTCACATGAGATTACACATTGGAGAAAAGCCATATTCATGCACTCAATGTGATAAAGCATTCACTCATAAGTGTTCTTTAATAAGACACATGCATTTACACACTGGAGAAAAGCCATATTCATGCATTAGATGTGATAAAGTATTTACTCAAAAAAGTCATTTGGCAGGCCACATGCGATTGCACACTGGAGAAAAACCATATTCATGCACTCAATGTGATAAAACATTTGCTAGAAAAGATTATTTGCGGCGCTCCTGCTTCGTCTATGTGGAGGGGGACTGGGAAACCGGCAGAGCCTTTACATCAGTCATTCCCAAAGTGGTCCCCATTCCAATTTCCCAAAGACTCGTCGGGGGTCTACAATCGGGGTCCACCGGATCCAGCAACATTTTGAAAGTGGTCTATGAATCAAAAGAGTCTGGGAACCACTGCTTTACATCCTGCCCCCCGCCGACGACCGCCCGCCCCCGCACGCTCCACCTGCAGGAAGGGGCCCGGGAACTACCGCGACTGCCGTCCCCGCCCGACGAAGGTGGTGAATGCGTTCAATGCGGGAGAAGACGCCTCCACGTCTAA
- Protein Sequence
- MILNHYSCGKQPSEEDKVLRYANAMALASSVCRVCLAGNIRMLYIENMHLIQLFEKLANSKVNIESDAGMPSTVCYVCHRQLQRCHQFSDMARRSDRTMRDLLHNNIEVTYSTITMMSLAPVPTLSVAPIQHMSMINCLYTTGTPVTVKEEQLIVELEETPASEKTVTGAIYYSNTSSPYVPVKEEQLVNIEEINVEDFQVTNNTGYSNTTSPLANANKEQFVKIEETAETDFLQVTSVEDAGVIDSSIELCEENIDEVKNEQANIHLCFCCDVCNKKVFSKYQLIKHLKVHTSVKTFTCNECDKTFICKSVLPSEEDKFLRYANAMALASSVCRVCLAGNIRMLHIENMHLIQLFEKLANSKLNSESDAGMPSTVCYVCHRQLQRCHQFSDMARRSDRTMRDMLHNNIEVLSYIFVSIMFPITCSTITMMSLAPVPTLSVAPIQHTSVIDCSYTTDTPVTVKEEQLAVEIEETPATEETVFGELQETPNEDTKVMDGSIEICIENVDEAENEQTNSHLCFYCDVCNKKVFSKHQLIKHLKAHMSLYQLKTHSCNQCDKIFTWKSMLVRHMRLHTGEKPYLCIQCDRAFAQKWSLTSHMRLHTGEMPYSCIKCDKSFAYNHQLTSHMLLHTGEKPYSCIQCDKAFAYKNQLTSHMRLHTGEKPYSCSLCNKAFTQKCHLTCHMRLHIGEKPYSCTQCDKAFTHKCSLIRHMHLHTGEKPYSCIRCDKVFTQKSHLAGHMRLHTGEKPYSCTQCDKTFARKDYLRRSCFVYVEGDWETGRAFTSVIPKVVPIPISQRLVGGLQSGSTGSSNILKVVYESKESGNHCFTSCPPPTTARPRTLHLQEGARELPRLPSPPDEGGECVQCGRRRLHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -