Ecor004641.1
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- ZNF219
- Assembly
- GCA_947095575.1
- Location
- OX352727.1:5256085-5258644[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.02 1 10.1 0.2 1 20 117 136 117 138 0.95 2 16 2.5 1.2e+02 3.5 1.5 3 23 144 163 143 163 0.96 3 16 0.023 1.1 9.9 2.0 1 23 168 190 168 190 0.96 4 16 0.026 1.3 9.8 1.3 3 23 196 217 195 217 0.94 5 16 0.035 1.7 9.4 3.5 2 21 221 240 220 241 0.92 6 16 0.076 3.8 8.3 2.0 1 23 250 273 250 273 0.92 7 16 0.00039 0.02 15.5 7.8 1 23 279 301 279 301 0.98 8 16 0.00028 0.014 15.9 3.1 1 23 308 331 308 331 0.97 9 16 0.001 0.051 14.2 0.3 2 21 447 466 446 467 0.93 10 16 0.0008 0.04 14.5 0.6 1 23 526 548 526 548 0.97 11 16 0.013 0.67 10.7 6.1 1 21 551 571 551 572 0.93 12 16 0.00048 0.024 15.2 1.1 1 23 584 607 584 607 0.93 13 16 3.5e-05 0.0018 18.8 2.3 1 23 613 635 613 635 0.98 14 16 0.041 2.1 9.1 0.1 5 23 645 663 643 663 0.96 15 16 0.29 15 6.4 2.9 1 23 669 692 669 692 0.94 16 16 0.0012 0.062 13.9 0.5 1 23 700 723 700 723 0.93
Sequence Information
- Coding Sequence
- ATGGAGGCCACGGCGGCTGGGATCCCGCACCAAGTCTGCCATCACTGTGCGACTCATGTCACCAGCTTCCTCCCTTTCCTAGAGCTGGTCCGCGAGTCAGCCGCGCGGTGGACCTATCTATCTGAACATTTACTTCATGTCTCCTCTCGCACTACAGCTAATACGGCGTTTATCTTCGTAACCGATCGCGTCCGAACCGTGCTAGAACGGAGGGGAAAAGTTAACACTGAAGATGCGATAGACGTAAAAAGTCGCATAAATCGATTACGAAAACAATTTAAAAAGAAAAGACAGCCGGTCAGAAAACCAGTTCTTGTAGAGGATAATTTGAGAAGGTGGAAATCGATTTACACCTGCGAGGAATGCGGAGGGAAGTACAGAAAGCTGTCTGATATTAACCATCACTTGGCTAACCAAAACAAGCGGCTATGCGGCCAATGTCACAAGGTCATAAACCTCAAAACATTTGCAGAACATTTGCAAACGCATCAAATATCTTTCTTCAAATGTACAGTTTGCTGCCTCCCTTTCGAGAGCAAGGAGCAGCTAGAAAAACACAAAATCTTGCATTTGGGAAAGAATATGTGCTCGGAATGCAAGAGGACATTTCCGACACCTGATATACTAACCCTGCATGTGCACAGGAAGCACGAGGCGGATGTTTGCAACAGCTGTACCAAAAAGTTTTCCAATAGAATCTGCTTGTTCAAACATAGAAGCAAATGCAGGTCCAAAGTGCAGAAAAAGTATATATGCGATCATTGCTCCAAGGAGTTCGGGCATAGAACTGTTATCAAATCCCATATAACGTTGGTTCATGATAGAAAGCTGTTGCACCAGTGCGAACACTGCGGGAAGCAGTTCAACAGCGCGTGCCATTTGGAAGAGCACTATGAGACCCACGACGTGGTACTGGACAGATACGTTTGCGCGTACTGTCATAATAAGTATAGCACGTCCGGGGGCTTCCGAAGGCACATGAGACTGAAGCACTACCGCTTGAGCCGAGAGCTGAAAAACAACATCGAGTACGGCACCGAGGACGAGGGCGAGCTCCTCCCACCGGGGCTCTGCTCCGCCTGCGCAGCGGACGTGGTGACGGCCGCTAACTTCAAGCATCTCTTCCAAAAGTCCGTTGTCCGCTGGAACGCGGCTGCATCCTACCTCTCGAAGATAAACCTCACGAGCGAGGACAGGACGCTGTTCCTCCTGTGCGAGGACAACGATATCGTTATTTGCGAGAAAAAGTTCGACACCGTCGAATCGGCCGCCACCACTCTCAGACACTTCAAGAAACCGAACCGCAGGAAGCCGCGGAAGAAGGAGATGATAACGTGCGTCTGTCCGTACTGCGACAAGACGTTCTTGTCGGCGGACGCGCTGAACGATCATCTCAAGAACGGAACGAAGAGCGTGTGCGTCGAGTGCGGGGCGATCCTGAGCAAGAGGGAGATGCCGCGGCACCTGGACGAGGCGCATCGTCTCGAGACGGTGCACTGCGGCATCTGCTACGATCTGTTCAACAGCTTCGGAGACGCCGACCGGCACATGACGCGCTACCACGGAGCCAACTCCTTCACGTGCAAGAGCTGCGGCCGCGGGTACAAGAGCGAGCGAGGACTGCGCGCGCACTGGTACTCGCACACGCTGTTCTGCTGCTCCGAGTGCGGCCGCAGCTTCGAGAACAACCGCTGCTACCGACACCATCGCCTCGTCTGCGCCTTCAAGCGACACCCCCCCTTCGGCGAGTACGAGTGCCACGACTGCGGGGCCAAGTACGACAAGAAGCCCTCCCTCAAGACGCACATCGTCCAGAAGCACATCCACGTGCTGCCGTTCGTGTGCAAGGCTTGCGGGAAGCGGACCTCGACGCGAGCGCACCTGACGTCTCACGAGCGGACGCACGAGGAGCATCGGAAGGTGCTGGAGTGCGAGTGCGGCGCCACGTTCCGCACGCCTCTCGGGCTGCGCCTCCACGCGAGGCTGCACAGCGGCCTGAAGCCCTACAAGTGCAAGCACTGCGACGACGCGTTCATATCCTCGTCCCGACGGCTGGACCACGAGAAGCGCAGACACCGGAGCATGAGGGAGCTGCCTCACGCGTGCGCCGAGTGTCCGGCGCGGTTCATACGTCCCTGGGAGCTCAGGAAGCATTATGCTATTTGTCATACCTAG
- Protein Sequence
- MEATAAGIPHQVCHHCATHVTSFLPFLELVRESAARWTYLSEHLLHVSSRTTANTAFIFVTDRVRTVLERRGKVNTEDAIDVKSRINRLRKQFKKKRQPVRKPVLVEDNLRRWKSIYTCEECGGKYRKLSDINHHLANQNKRLCGQCHKVINLKTFAEHLQTHQISFFKCTVCCLPFESKEQLEKHKILHLGKNMCSECKRTFPTPDILTLHVHRKHEADVCNSCTKKFSNRICLFKHRSKCRSKVQKKYICDHCSKEFGHRTVIKSHITLVHDRKLLHQCEHCGKQFNSACHLEEHYETHDVVLDRYVCAYCHNKYSTSGGFRRHMRLKHYRLSRELKNNIEYGTEDEGELLPPGLCSACAADVVTAANFKHLFQKSVVRWNAAASYLSKINLTSEDRTLFLLCEDNDIVICEKKFDTVESAATTLRHFKKPNRRKPRKKEMITCVCPYCDKTFLSADALNDHLKNGTKSVCVECGAILSKREMPRHLDEAHRLETVHCGICYDLFNSFGDADRHMTRYHGANSFTCKSCGRGYKSERGLRAHWYSHTLFCCSECGRSFENNRCYRHHRLVCAFKRHPPFGEYECHDCGAKYDKKPSLKTHIVQKHIHVLPFVCKACGKRTSTRAHLTSHERTHEEHRKVLECECGATFRTPLGLRLHARLHSGLKPYKCKHCDDAFISSSRRLDHEKRRHRSMRELPHACAECPARFIRPWELRKHYAICHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -