Basic Information

Insect: Electrophaes corylata
Gene Symbol: -
Assembly: GCA_947095575.1
Location: OX352727.1:1595272-1597580[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.038 1.9 9.2 5.6 1 23 58 80 58 80 0.98

2 16 0.038 1.9 9.2 0.2 3 23 106 127 104 127 0.95

3 16 0.22 11 6.8 0.2 2 23 148 170 147 170 0.93

4 16 0.065 3.3 8.5 0.7 3 23 178 198 177 198 0.90

5 16 0.01 0.5 11.1 0.3 2 23 204 225 203 225 0.94

6 16 0.0023 0.11 13.1 1.7 2 23 230 252 229 252 0.96

7 16 0.0024 0.12 13.0 2.4 2 23 259 281 258 281 0.95

8 16 0.045 2.3 9.0 1.3 1 19 322 340 322 345 0.94

9 16 4.5 2.2e+02 2.7 0.0 2 19 372 389 372 390 0.84

10 16 0.39 20 6.0 0.3 2 23 417 439 416 439 0.94

11 16 0.02 0.99 10.1 0.1 1 23 443 466 443 466 0.95

12 16 9.4e-06 0.00047 20.6 0.4 3 23 471 492 470 492 0.97

13 16 0.053 2.7 8.8 0.3 2 23 498 520 497 520 0.93

14 16 0.00052 0.026 15.1 0.7 3 23 529 550 527 550 0.94

15 16 0.4 20 6.0 0.1 2 20 557 575 556 578 0.94

16 16 0.0016 0.078 13.6 0.3 6 20 588 602 586 604 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.038	1.9	9.2	5.6	1	23	58	80	58	80	0.98
2	16	0.038	1.9	9.2	0.2	3	23	106	127	104	127	0.95
3	16	0.22	11	6.8	0.2	2	23	148	170	147	170	0.93
4	16	0.065	3.3	8.5	0.7	3	23	178	198	177	198	0.90
5	16	0.01	0.5	11.1	0.3	2	23	204	225	203	225	0.94
6	16	0.0023	0.11	13.1	1.7	2	23	230	252	229	252	0.96
7	16	0.0024	0.12	13.0	2.4	2	23	259	281	258	281	0.95
8	16	0.045	2.3	9.0	1.3	1	19	322	340	322	345	0.94
9	16	4.5	2.2e+02	2.7	0.0	2	19	372	389	372	390	0.84
10	16	0.39	20	6.0	0.3	2	23	417	439	416	439	0.94
11	16	0.02	0.99	10.1	0.1	1	23	443	466	443	466	0.95
12	16	9.4e-06	0.00047	20.6	0.4	3	23	471	492	470	492	0.97
13	16	0.053	2.7	8.8	0.3	2	23	498	520	497	520	0.93
14	16	0.00052	0.026	15.1	0.7	3	23	529	550	527	550	0.94
15	16	0.4	20	6.0	0.1	2	20	557	575	556	578	0.94
16	16	0.0016	0.078	13.6	0.3	6	20	588	602	586	604	0.95

Sequence Information

Coding Sequence: ATGCAAGAAATACTATCAGATTCGTCTGAGCACACAAAAGATATATCAGACATTGACACAGATACTCAGAGTGACTGTGAGGGACCTAAAAATCTAGAAAAACTAAGAACTAACGTCAAAAACGTGGTTCAAGCTTCAACCGTCATGCCTTTTCGATGGCTCGTCTCTGCATACAGATGTTTTTACTGTTACGACGTCTTTCACCACCAAGACGAGCTAAAATCGCATCAAATGCTTCACGATGACTCAGAAATCGTTGACGCTATGAGCAAGTTCTGGGACACAGCAGTTTACATAGACATTTCTATTATAAATTGCAAACTATGCTCTTCGACTTTTAATTCCGTGGACGGTTTGATTGATCATTTGATGATCAAGCACAAAATACCTTACGATAAAGATGTGGAAAGCTTTCAGTGTTTTAAGTTAGGTGAGAAAGTCTCATGTACCGCATGCAACTTAAAGTTTGCTAATTTCGCATTGCTACTCATTCACACAACCTCAAATCATCAGCATAATGAGGATCAGCTTTGTGACGTTTGCGGAAGATCTTTCAAACCGCACCAAATTAAAATGCATCTAGCAAATGAACATAGAAGTAGAACTGTGAAATGTAGGATTTGTAATAAAATTTTTAGCGGTTACGCACTAAGAACACACATGGTGCGAGAGCACAAAAGACTGTTAAAATGCCATATGTGTTCAGAGACATTCAGGACAGCTTACAAACGCGCTGCGCATCTTACAACCGTTCATAAAGGGAGGGAGCTGCTTAAATGTCCACATTGTCCAAACACCTATTACTTTCAGAGCACTATGAAAAGGCATGTGAAACAAGTTCATATGAAGGAAAAAAATATCGGATGCAAGGTGGCCTTGAAGAACGAACAGCAACTAGCAGCGTTGCTTATAACTATAATTCAGCACTCCACGTTGCTACCCTTCCGATGGCATAAGGGGAGATTCATGTGCTTCTACTGCTCCTCGACATTCAACACTAGCACAGCTTTGAAAGACCACGATAAGGACGGCCACGATGAAATTAATATCACAGATATTGTCACTCAAGTTATGTACAACGATCGTAGAATCAAACTAGATGTTGCAACAGCGAGATGTAGCCAATGCGATAAGCAAATCGCCGATATAACGGACTACATTGAACACCTTTGGGAGAAACACGACGCAGACTTCGATTCAGATGTCGCTAAACACTTTATTTCCTACAGACTTTCCGATAATTATATGAGCTGCGTTGAATGCGGACTACACTTCCAATACTTTGGGCCATTACTCATCCACACCAATAAAGCCCACATGAATAAACACATGTGCGAGATTTGCGGGCAAGGTGTGGTCGGAAAAGTGAACGTTTACAACCACATGAAGCAAATACACGGTATCAAAGCTTGCAAGTACTGTGACGAGACTTTTCGCACTCAATACGCATTATTCCAACACGTATCAACAGTACACAAGACTGACGAGTTAAAATGTAGCGTTTGTGGGGAGTTTCAACCGAATCGGTACAAAATGAAGCGCCATATGGCTTTGGTGCACGATTGCAAGAAACTGCAGATAATCTGTGAATACTGTTCCAAGGTTTTCACGAGGAATAATAAGTATGTGCAGCATAAAGAACGCGTGCATTTCAAGCTGAAGAATATAACTTGTGATGTGTGTGGGTACGGGACGTATGACGTGCCAGCTTTAAAACTACACATGGTGTGTCACGAAGAATCTATGCCGTACTCGTGTGCTTGCGGAAAACGGTTTAGGAGATCTAAAAATCTGCTTGCACATCAAATTCAGTGTTCGGAACATAACGTCGAGTCTCGGACCACGGTTTCTTCCGAAGGCACTGAAAGCACCGCCGAACAGTTATTACGTTGCGATTGA
Protein Sequence: MQEILSDSSEHTKDISDIDTDTQSDCEGPKNLEKLRTNVKNVVQASTVMPFRWLVSAYRCFYCYDVFHHQDELKSHQMLHDDSEIVDAMSKFWDTAVYIDISIINCKLCSSTFNSVDGLIDHLMIKHKIPYDKDVESFQCFKLGEKVSCTACNLKFANFALLLIHTTSNHQHNEDQLCDVCGRSFKPHQIKMHLANEHRSRTVKCRICNKIFSGYALRTHMVREHKRLLKCHMCSETFRTAYKRAAHLTTVHKGRELLKCPHCPNTYYFQSTMKRHVKQVHMKEKNIGCKVALKNEQQLAALLITIIQHSTLLPFRWHKGRFMCFYCSSTFNTSTALKDHDKDGHDEINITDIVTQVMYNDRRIKLDVATARCSQCDKQIADITDYIEHLWEKHDADFDSDVAKHFISYRLSDNYMSCVECGLHFQYFGPLLIHTNKAHMNKHMCEICGQGVVGKVNVYNHMKQIHGIKACKYCDETFRTQYALFQHVSTVHKTDELKCSVCGEFQPNRYKMKRHMALVHDCKKLQIICEYCSKVFTRNNKYVQHKERVHFKLKNITCDVCGYGTYDVPALKLHMVCHEESMPYSCACGKRFRRSKNLLAHQIQCSEHNVESRTTVSSEGTESTAEQLLRCD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -