Ecor007665.1
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- RIM101
- Assembly
- GCA_947095575.1
- Location
- OX352724.1:679413-682826[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.3 67 4.4 1.5 1 23 250 273 250 273 0.94 2 18 0.034 1.7 9.4 3.7 1 23 278 301 278 301 0.97 3 18 0.87 44 5.0 0.9 2 23 305 326 304 326 0.95 4 18 0.00021 0.011 16.3 0.3 1 23 331 354 331 354 0.97 5 18 0.024 1.2 9.8 0.7 3 23 418 439 416 439 0.92 6 18 3.8e-05 0.0019 18.7 2.3 1 23 445 468 445 468 0.97 7 18 0.0081 0.4 11.4 0.5 2 21 472 491 471 492 0.94 8 18 0.0062 0.31 11.7 0.4 1 23 500 523 500 523 0.92 9 18 0.0035 0.18 12.5 1.8 1 23 528 551 528 551 0.96 10 18 0.0086 0.43 11.3 0.3 2 23 564 585 563 585 0.95 11 18 0.0008 0.04 14.5 1.3 1 23 591 613 591 613 0.97 12 18 9.4 4.7e+02 1.7 0.3 2 10 619 627 618 636 0.78 13 18 4.6e-06 0.00023 21.6 0.7 2 23 650 671 649 671 0.96 14 18 0.65 33 5.3 0.8 3 23 677 697 676 697 0.90 15 18 0.0019 0.097 13.3 0.4 1 23 714 737 714 737 0.97 16 18 4.4e-05 0.0022 18.5 3.0 1 23 743 765 743 765 0.99 17 18 0.00033 0.017 15.7 6.4 2 23 772 793 771 793 0.96 18 18 0.0057 0.28 11.8 1.8 1 23 799 822 799 822 0.96
Sequence Information
- Coding Sequence
- ATGGACATCCCGACCAACATGAAAACCCAGGAGGTACTCAACTTAGAATGGCTGAAATCTTGCATGACAACAATCTGGACTTCACCGAGATACTGTGCACTTTGCCTCGCCAGTGATGCAGAATATTTGGCTTTGAGCATGGAGTTCGCTAGCAACAAGGAAACATCTACTAAGCCACTGAGAGAAGTGGTCAATTATGTGTTTAATTTCGATATTGAAGACTGTATTCCAAGTGACTATGTATGTGTGCAATGTGCAGAAAAAACCATACAAACATACATATTCATAACAAATACCAAAAAAACTTTTGACATTTTGAACAACTGTCTGAATGATATGAATTCAAAAGTCAACGACATAAAGAACACATTGAAAGATGGAAATAAATATGATGGTTCAAATGTAGTTATCGTAATAGAGAATGATAATGAAACCTATGAAAAAATCAGTGAGTTAGCTTCAACCAATAATGCTATTTTAACCAATGAACCTATCGTAGTTAAGAAGAATAACTTGAGCAGGCCTCTTGTACCAATCACTTCTAATGTACCTGATAAAGATGAAAGTAATGGTCCATTGGTCATCCCTACACCAAGAATAATCAAACACCCAAGGACGAAAGAGGTTGAGAGAAAAGTAAACTTTGAAGAAAAGGTTACAACTCCAAATGTAACTCTTAAAGAGGGTAAATTAGTTATTGAACCTCTCATAACAAACAGTATTCCGTCAACTCCAAGATTCAACACTTACTCATGTAATTCTTGCACAGATATTTTCACAACATATAGATCTATGAAAGAGCATGAAAAAGCGAAGCACAACACAGTTATCTACAAGTGTAGATATTGTGTTAAAATCTATAACACTCAGCAGTATTTAGACGTACACTATTTATCTTGTCACAAAAAATCTAGATGTAAACTTTGTAAAGACGTTTTTGATTCTGAAGTGCTAAACAATCACTTGAAAAAGATGCATCTTAAATTTGTCTATCCTTGTTCTGACTGTGATTTGGTTTACTACTCGTATGAAAAACTCGAAACTCATATTAAGTCCAGCCATTTTAAGCTTAATCTTGAGACAAGCAAAAGTCAGCATTGTGCCATGTGTCTGAAGAACTTGAAAGATTTAGAAATGCTGAGTCACAAATGCAAATTTAACTGTCTGGAATGCCCCAAAGTTCCCTGTATCCACTACAGCTACCTCATGTCTTATAGAGATCAAGTCTTGAACCATTCTCCGATAATAAGCTGCATAGACTGTGACTATACAACTAAAAGAAAAGAACATCTGATTGGACATGTGAATCGAGAACATTTGGACCATCACCCATTCACATGCAGTGATTGTGGAACACAGTTTTACACAAAATTGTCGCTCAAAACTCATATAAGGCAGTTCCACCAGAATTTAAAATGTCAGTACTGTGACTCTAACTTTGATAATACAAAATCGTTGCGAGCACACCGTCAAGTTTGTAAAACAAGCACTCGTCGATATAACTGTGAGAAATGTGTGGCATCTTTTGATACGTCACAAGAATTGGAAAAGCATAGCACTGTGAACCATAGCGAGTTTGTATATCCTTGCTCATTGTGCACAAAAGAGTATCCTAACAAAGACTGTTTGGAAGAACACCATGCTAGGGTCCATAGCGGAATCCAATACAAAAAGCGAAGAAAGATGATTGAATGCACTCTCTGTGATATCACTTTTAAGAGTTTAAAAGAAATGCTTGAGCACGAGAAACAACATTCTCCCAGTGAAATGTTCCCATGTAAAGTGTGTCCGAAGAGTTTTAAGAACCTTAAAAAGATTTATATTCACAAACAAATGCACTATTCACAACGAATGAAGTGTCCTACTTGCAAGAAAGCGGTTGCTATGTCTTATTTCAAGCAACATAAAGTTATATGTTTATCTCAGAGGTCATCAGAGGCCAAGAAAGTCTGTGAAGTTTGCGGTAAAGCCTTCCGTTTGCAATCGAGTTTAAAAACGCACCAGAAACTACACAACAAACCAGAGCCTTGTGTGCACTGTGGTAAAATGATCAAACCGTCATCAATGAAACAGCATCTAGAGTTAAAACACGAGTCTTATACATGTGACGTTGACTTGTCTATAAAAGAGATTCAGGTTTATAAGTGTGGAGACTGCGGATATGTGGCACAGAAGAAAAACAATTTTGAGAATCATGTGAACAAAGTGCACTTAAAGATTAAGCCTTACAGTTGTGATGTGTGTAGTCGCACGTTTTGTGGCAAGTCCAGACTACTGGAGCATATGAGAACACATTCAACAATCAACTCCTGCTTTTGTTCGTACTGTGGGAAAAAGTTTGCTAATAAAGTATGCTTAAAAATGCATGTCCGTAGACATACAGGAGAAAATCCTTATGAATGTAATATTTGCTCTGAGAGATTCCGTTCTTCCAGTATAATGAAGACTCATCGCTTGAAGAAGCACCAGGATAAAACCATACCCTGTCCATTATGTGACTCGATGTATCACATATTAGCCGAGATGAGGTTCCATGTTAAAAAAGTACATTGGAAAAGATCCGAACCGTTTGATTATAAAAAGATTGTTCCTAAACAGTGTTACCATTTGTTTCAAGATAGAAGATTACAGAAATTAGGAGATGATTCGATGGATTTGGGGTTTACTGATCTGGGGAAGTAA
- Protein Sequence
- MDIPTNMKTQEVLNLEWLKSCMTTIWTSPRYCALCLASDAEYLALSMEFASNKETSTKPLREVVNYVFNFDIEDCIPSDYVCVQCAEKTIQTYIFITNTKKTFDILNNCLNDMNSKVNDIKNTLKDGNKYDGSNVVIVIENDNETYEKISELASTNNAILTNEPIVVKKNNLSRPLVPITSNVPDKDESNGPLVIPTPRIIKHPRTKEVERKVNFEEKVTTPNVTLKEGKLVIEPLITNSIPSTPRFNTYSCNSCTDIFTTYRSMKEHEKAKHNTVIYKCRYCVKIYNTQQYLDVHYLSCHKKSRCKLCKDVFDSEVLNNHLKKMHLKFVYPCSDCDLVYYSYEKLETHIKSSHFKLNLETSKSQHCAMCLKNLKDLEMLSHKCKFNCLECPKVPCIHYSYLMSYRDQVLNHSPIISCIDCDYTTKRKEHLIGHVNREHLDHHPFTCSDCGTQFYTKLSLKTHIRQFHQNLKCQYCDSNFDNTKSLRAHRQVCKTSTRRYNCEKCVASFDTSQELEKHSTVNHSEFVYPCSLCTKEYPNKDCLEEHHARVHSGIQYKKRRKMIECTLCDITFKSLKEMLEHEKQHSPSEMFPCKVCPKSFKNLKKIYIHKQMHYSQRMKCPTCKKAVAMSYFKQHKVICLSQRSSEAKKVCEVCGKAFRLQSSLKTHQKLHNKPEPCVHCGKMIKPSSMKQHLELKHESYTCDVDLSIKEIQVYKCGDCGYVAQKKNNFENHVNKVHLKIKPYSCDVCSRTFCGKSRLLEHMRTHSTINSCFCSYCGKKFANKVCLKMHVRRHTGENPYECNICSERFRSSSIMKTHRLKKHQDKTIPCPLCDSMYHILAEMRFHVKKVHWKRSEPFDYKKIVPKQCYHLFQDRRLQKLGDDSMDLGFTDLGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -