Ecor004326.1
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- -
- Assembly
- GCA_947095575.1
- Location
- OX352727.1:1605920-1612457[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0013 0.067 13.8 2.3 2 23 129 151 128 151 0.95 2 29 0.00059 0.029 14.9 5.0 1 23 156 179 156 179 0.98 3 29 0.13 6.3 7.6 4.5 1 23 183 206 183 206 0.97 4 29 1.2 61 4.5 4.8 2 23 209 231 208 231 0.97 5 29 1.6 80 4.1 4.2 2 20 238 256 238 258 0.91 6 29 0.0019 0.096 13.3 2.4 1 23 307 330 307 330 0.92 7 29 1.3 67 4.4 0.2 2 23 359 381 358 381 0.91 8 29 0.011 0.54 10.9 0.8 1 23 402 425 402 425 0.96 9 29 0.041 2 9.1 0.6 1 23 430 453 430 453 0.93 10 29 5.4e-05 0.0027 18.2 3.8 1 23 460 483 460 483 0.95 11 29 0.55 27 5.6 4.2 3 23 490 511 488 511 0.93 12 29 0.0037 0.18 12.4 2.7 1 23 515 538 515 538 0.97 13 29 0.0084 0.42 11.3 0.4 2 23 545 566 544 566 0.97 14 29 0.0015 0.074 13.7 2.4 1 23 572 594 572 594 0.96 15 29 0.47 23 5.8 3.5 1 23 636 658 636 658 0.96 16 29 7.3 3.6e+02 2.1 0.5 3 23 687 708 686 708 0.80 17 29 0.044 2.2 9.0 4.3 2 23 729 750 728 751 0.94 18 29 0.00042 0.021 15.4 1.1 1 23 756 779 756 779 0.96 19 29 0.028 1.4 9.7 4.3 1 23 784 807 784 807 0.94 20 29 0.0049 0.24 12.0 2.3 2 23 810 832 809 832 0.95 21 29 5.7 2.9e+02 2.4 0.2 2 20 839 857 838 859 0.91 22 29 0.18 9.2 7.1 1.1 1 23 916 939 916 939 0.97 23 29 0.014 0.7 10.6 0.2 2 23 1014 1036 1013 1036 0.92 24 29 0.00013 0.0063 17.0 0.2 3 23 1043 1064 1041 1064 0.95 25 29 0.0003 0.015 15.9 1.9 2 23 1069 1091 1068 1091 0.95 26 29 0.015 0.77 10.5 0.7 1 23 1096 1119 1096 1119 0.97 27 29 0.3 15 6.4 6.6 1 23 1123 1146 1123 1146 0.95 28 29 0.037 1.9 9.3 0.7 2 23 1153 1174 1152 1174 0.96 29 29 3.9e-06 0.0002 21.8 1.7 1 23 1180 1202 1180 1202 0.99
Sequence Information
- Coding Sequence
- ATGAAACCTGCAGGAAACGTGCAATTCACTGCCAATGAAAGCAGACGAAGGAATCTTCAAACATTAGTCAACAACACCTCTGTGATACCGTTTAAATGGCGTGGCAAATACTTATGTTACTTCTGTGGAACAGATAAACAAAAATATAATGATTTAAAAGAGCATGTAAAAATACATGTTCCCTGTTCTACTACCGAGCGAGCAATGAAACTTATAAAATGTGGAAATGAAACTAAAGTAGACGTCTCAGAAACTAAATGCAACGCTTGTTTAGAAGAGTTTTCCGGGATCGATGCTTTGATATCACATTTGAAATGCAAACATAAGCTCTGGTATAATGAAGATGTGTCTTTAACTCTCGCGCAATACCGACTGGCCGATTTGAAATGTCTTGTATGCGACGAGAGTTTCCAAACGTTCTGTAATCTGGTACGGCATATGAATCAGAACCACCCTGATAATTGCTTTCAATGTGATAATTGCAGCCAAAAATTCAATAAACAGCGAGATTTATCTCACCATATCAGAAAGTACCACAGGAAATTTTATAACTGTCCAAAGTGTTCTCTTTCGTTTTCATGCTTTAAGAATCTTGTCAAACATAAAAATAAGGAGCATATGTCTAAGTGTAATCTTTGTTTCCATATATTTTCATCGTATAAGAAACGTCTAAGCCACATGAAGAAGGAACATCAATTAAACCATGGAGGAGAGTGCGGATTTTGTCACAAACAGTTTCACACAAAACACAGTTTTTTGGATCATGCTACCAGATGCAAAGTTTCCATAAAAGAAGAAGAATCTATTGTAGTTGTTGACGATGAAGATAAAAATGAGAACGTTAAAGAACTTAGAACTGACATTGCTTATGTCATCAATATGACAGGTGCTATGCCTTTTAATTTCTTGTATAACAAGTTCAGATGTTTCTACTGCCCGAAAGACTTTACTGTTTGCGACGATCTTAGACAACATACGACAGCTGAACATCCTATTTGCGAAACAACCATTCATGCAATGAAGCTACGTGGGAGATCTGAGGGGGTCAAGATAAAAGTTGACACATCTTCACTATCTTGCCAAATGTGCTTTGAAAAGTTCACCGATTTCATTAAAGCAATCAACCATTTAGAAGTCGAACACAAAGTCGTCATAAGTAAATGCGTTGATATGTTCAGACCCTTTCTCTTAGTACACGATAAGTTTCGCTGTATGTTTTGTGACTTAGAATTCAGATATTTTAATTTGCTATTGCAACACATGAATGCGATTCATTCTGGTAACCAATATATTTGCTCGTTTTGTGGTAAGGCTTTTCTTTCGTATCAGTATCTACGCGGTCACATTTCTCTATATCATTCGAGTGATAGGTTCAAGTACAATTGTAACCATTGCAATCAAAGATTTACGACTAATGATACTTTGAAGCTACACATGGGCAAAACACACGGCATAAAGGTGATAAATTGTCAGCAGTGCTCGGAAAAGTTTATCTCACACTATCATAAAATGCGGCACATTGTTAAAACTCACAATGGGGGCCATAAGTGCTCTTACTGTGATATGGCATTTATCAAGTACTCGTTTATGATCAACCACGTTAGAAGATCGCACCTTAAAGAAAAAAATGTTCAGTGTACTTTGTGTAATGAACTGTTTTTTGATGCGCAAAGTCTGAAAATGCATATGGTGAAACATGTTGGCGAACGGTCGTTCCGCTGTGACTATTGCAAAAAGAGTTTTCTCAGGAAGACAAACCTTCGAGGTCATGTGACCCTTCACCTTAAAAACGGCAATGAAACGCCCGACTTCCTGATCGACCTGAAAACATCTGAGCGAAGGAGGGAAATCTTGAAAACAATATTCGATAACTCGACAATACTCCCCTTCAAGTGGCGAGGAAAGCACATCTGTTTCTATTGTAGTACTCCTCTCAGGAGTTATATTGAATTCAGAAAGCATACTAAGTCTCACGGCACATGTAGCGTTCAAAATAATGCAATGAAAAACTTAAAAGGTCACGGGGTAACAATTAATGTAGATGTATCAGAAGCCGCGTGTAAACTTTGCAAGCAGCAATTCAAAAGCTTTAAAGTGATAGTAGACCATTTAATAAACCAACATAATTTGTTCAACGAAAAAGAAATTTGTAGTGAAGTTGTAGAGTACAGATTGATTGATTTGCAGTGCACGCAATGTGACTCGCAATTCAAAGTATTTAGTCATTTGGTTTCTCACGTAAATAAGCATCATCCGCTAAACACTTTTATCTGTGATAATTGCGGACGCAAGTTCAACAAAAAGAGGGATATAGCGAACCACATGAACAATTATCATCGGTTAGCAGGTTACGTTTGTAAACAATGCGGAGAAGAATGCCAAAGCCGTTTCAAATTGCGAAAGCATATAGCGCATACACATCTGACGCGATGTCACGTTTGCGGTAAGCAATTCATGTACTTAAGTAGGCTGTACCAACACCTCAAGCTTGAACATTCAAATGCTGATGACAAGTCTTGCGGTTTTTGCATGAAAGAGTTTCAAACTGCAGTCGGTCTGAAACTGCACTTAACAAAGTGCAAAGTAAAGTTGATCTCGCAAGACGGAACCGATATCCCTGAAAGTACCAATCCAGTATACACCCTAAACCCAGCGAGAACGCACGAGCAGATCGTACGTATCCGCGAAAATATTCAATGTGTCCTCAATATGTCTACAGCGTTACCCTTCAGGTTTAGAGTTACATTCTCTTGTTTCTACTGCGCACTGAAGTATGATGATTACGAAGTGCTTAAACAGCATACTAAAACGGAACATCCTGTATGCGACATCAAAAGTAAATCGATGAAAAAGTGTAAGGGAAAACGTACTTTCGTCAGAGTCGATATAGCAGATCTGGCTTGTAAATTGTGCTCTGCACCCATGCCAGACTTGGAGCACTTTATTGATCACGCAATCTCCGTCCATGATGCGGACTACGACAAAACTATCAGTATAGATACTTGTTTTGAACCTTATCGTTTAATTAAAGGCAACATTCCATGTCTTGAGTGTCCCAAGGTCTTCCGATACCTCAACACTATGCTGAGGCATTTCAATTTAGAGCACAGTAATAATAACGTAATATGCGATTACTGCGGCCGCGGTTTCCGTGATGATACCAACCTGAAGATGCACCTTCAAAACATTCACACAGGTTCTTGCGAATGTAAGGTTTGCAACGCCAAGTTCAAGAACCAATCAGTTCTTGTTCGACATATGGCCAAAAACCACGATGTGAAGAGTTTCAAATGCCCCAACTGTTTGGAAATGTTTGAGTCCGAGTACCAGAGAAAGACACACTTGATCAAAGTGCACGGTATCGGCCACAAATGCGAGTATTGCGGAAAGCTGTTTACGAAACATTCGTTTAAAGATTCTCACGTAAGGCGTACGCATTTGAAAGAGAAAAATGTCACTTGCTCTGTCTGTAATGATAAGTTCTTTGATAATAATTTGCTGCGGATGCATATGGTAAAACATGATGGGGAACGGAAGTTTAAGTGCGATTTATGTGGTAAAGGTTTTTTAAGGCAAAAGAACTTACGAACTCACATGAACACTCATAAGAAATACGGTTTTGTTCAGTAA
- Protein Sequence
- MKPAGNVQFTANESRRRNLQTLVNNTSVIPFKWRGKYLCYFCGTDKQKYNDLKEHVKIHVPCSTTERAMKLIKCGNETKVDVSETKCNACLEEFSGIDALISHLKCKHKLWYNEDVSLTLAQYRLADLKCLVCDESFQTFCNLVRHMNQNHPDNCFQCDNCSQKFNKQRDLSHHIRKYHRKFYNCPKCSLSFSCFKNLVKHKNKEHMSKCNLCFHIFSSYKKRLSHMKKEHQLNHGGECGFCHKQFHTKHSFLDHATRCKVSIKEEESIVVVDDEDKNENVKELRTDIAYVINMTGAMPFNFLYNKFRCFYCPKDFTVCDDLRQHTTAEHPICETTIHAMKLRGRSEGVKIKVDTSSLSCQMCFEKFTDFIKAINHLEVEHKVVISKCVDMFRPFLLVHDKFRCMFCDLEFRYFNLLLQHMNAIHSGNQYICSFCGKAFLSYQYLRGHISLYHSSDRFKYNCNHCNQRFTTNDTLKLHMGKTHGIKVINCQQCSEKFISHYHKMRHIVKTHNGGHKCSYCDMAFIKYSFMINHVRRSHLKEKNVQCTLCNELFFDAQSLKMHMVKHVGERSFRCDYCKKSFLRKTNLRGHVTLHLKNGNETPDFLIDLKTSERRREILKTIFDNSTILPFKWRGKHICFYCSTPLRSYIEFRKHTKSHGTCSVQNNAMKNLKGHGVTINVDVSEAACKLCKQQFKSFKVIVDHLINQHNLFNEKEICSEVVEYRLIDLQCTQCDSQFKVFSHLVSHVNKHHPLNTFICDNCGRKFNKKRDIANHMNNYHRLAGYVCKQCGEECQSRFKLRKHIAHTHLTRCHVCGKQFMYLSRLYQHLKLEHSNADDKSCGFCMKEFQTAVGLKLHLTKCKVKLISQDGTDIPESTNPVYTLNPARTHEQIVRIRENIQCVLNMSTALPFRFRVTFSCFYCALKYDDYEVLKQHTKTEHPVCDIKSKSMKKCKGKRTFVRVDIADLACKLCSAPMPDLEHFIDHAISVHDADYDKTISIDTCFEPYRLIKGNIPCLECPKVFRYLNTMLRHFNLEHSNNNVICDYCGRGFRDDTNLKMHLQNIHTGSCECKVCNAKFKNQSVLVRHMAKNHDVKSFKCPNCLEMFESEYQRKTHLIKVHGIGHKCEYCGKLFTKHSFKDSHVRRTHLKEKNVTCSVCNDKFFDNNLLRMHMVKHDGERKFKCDLCGKGFLRQKNLRTHMNTHKKYGFVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -