Basic Information

Insect: Electrophaes corylata
Gene Symbol: -
Assembly: GCA_947095575.1
Location: OX352727.1:1946791-1949197[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.039 2 9.2 0.2 2 23 29 51 28 51 0.95

2 17 0.0026 0.13 12.9 0.7 1 23 73 95 73 95 0.98

3 17 0.0073 0.37 11.5 0.6 1 23 99 121 99 121 0.97

4 17 0.00079 0.04 14.5 1.7 1 23 126 149 126 149 0.95

5 17 0.061 3.1 8.6 0.9 2 23 156 178 156 178 0.96

6 17 2.1e-06 0.00011 22.6 0.9 1 23 185 208 185 208 0.98

7 17 0.00021 0.011 16.3 1.6 1 23 214 236 214 236 0.98

8 17 9.8e-06 0.00049 20.5 4.7 1 23 242 264 242 264 0.98

9 17 0.025 1.3 9.8 0.3 1 23 334 356 334 356 0.90

10 17 0.83 42 5.0 0.2 2 23 385 407 384 407 0.90

11 17 2.1e-05 0.0011 19.5 2.0 1 23 430 452 430 452 0.99

12 17 0.0053 0.27 11.9 0.1 1 23 456 478 456 478 0.97

13 17 0.00063 0.032 14.8 5.6 1 23 483 506 483 506 0.96

14 17 0.015 0.74 10.5 0.2 2 23 513 535 513 535 0.94

15 17 0.0012 0.061 13.9 0.3 1 23 542 565 542 565 0.96

16 17 0.00018 0.009 16.5 3.0 1 23 571 593 571 593 0.96

17 17 3.1e-06 0.00015 22.1 4.0 1 23 599 621 599 621 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.039	2	9.2	0.2	2	23	29	51	28	51	0.95
2	17	0.0026	0.13	12.9	0.7	1	23	73	95	73	95	0.98
3	17	0.0073	0.37	11.5	0.6	1	23	99	121	99	121	0.97
4	17	0.00079	0.04	14.5	1.7	1	23	126	149	126	149	0.95
5	17	0.061	3.1	8.6	0.9	2	23	156	178	156	178	0.96
6	17	2.1e-06	0.00011	22.6	0.9	1	23	185	208	185	208	0.98
7	17	0.00021	0.011	16.3	1.6	1	23	214	236	214	236	0.98
8	17	9.8e-06	0.00049	20.5	4.7	1	23	242	264	242	264	0.98
9	17	0.025	1.3	9.8	0.3	1	23	334	356	334	356	0.90
10	17	0.83	42	5.0	0.2	2	23	385	407	384	407	0.90
11	17	2.1e-05	0.0011	19.5	2.0	1	23	430	452	430	452	0.99
12	17	0.0053	0.27	11.9	0.1	1	23	456	478	456	478	0.97
13	17	0.00063	0.032	14.8	5.6	1	23	483	506	483	506	0.96
14	17	0.015	0.74	10.5	0.2	2	23	513	535	513	535	0.94
15	17	0.0012	0.061	13.9	0.3	1	23	542	565	542	565	0.96
16	17	0.00018	0.009	16.5	3.0	1	23	571	593	571	593	0.96
17	17	3.1e-06	0.00015	22.1	4.0	1	23	599	621	599	621	0.99

Sequence Information

Coding Sequence: ATGCATGAGGACATTAAAATGTACGAAACAAGTCGCGCACTCCGTAAAACTACAGAGATGCTAAAAGTAGATATTACTGATGTAAGCTGTAAACTTTGCGACACTATGATAGATAGTTTTAATAATCTGAAAATTCATTTAATCAAAATCCATAACCATAATTCTAACCTCTTGTCGGatgatggaactataacgttcaaattaaatccaggctcctttaaatgtggtacatgtgatgtcgactttcctgagtacatgacactctttcgtcatttgaaaagccatttccaaaagtatgtttgtgagacgtgcggggctggatttgtttctcataacgcaatgagaactcacaataccacgcacgaaacaggatctttctcttgcaccgtatgtgacaaagtatttcggacaaaacaaactagagatcaacataagaaggtggttcatatgaaagtcaagctgaatagatgctcttactgctccgaaacttttatgaactacgttcaaaagttgaatcatattttcaccgttcacggaatcaaaattaaagagttcaaatgtgaaatttgtccaagggtatttaccatgaaaggccgattaaccaggcatgtgcgtaccacgcatacgaaggagaaactacacacttgtgaagtatgcactgtgaaattcggtactaaagccactttaaaagaacacatgctaaaacatactggggagaaaaatcatcggtgtcaaatttgtcataaggcgtttggccgaaagtttactttacaagagcatatgagaattcatttgaatgataggcgCAGAGCTGTTGTTGATCACACTTCTGTTCTCGTTTTAGGTATCGAAGAGCCCTCGAACGAGATTCAAGAAGATATTTTTACAAACATCGATACGAAGAGACAAGTAAACCAGGTTAATCGTGATAAAAGGCGCCGCATATTAGTGCTTCTGGAATGTTCCAGAATGTTGCTCTTTAAACAGAAAGGTGTTTTATTTATGTGTATATACTGCGATCAAAAATATACCGACCCTGCGAAATTAAGACAACACAATATTGAACACGACGATGTTAAACCTATTGAAATAAAAAAAGCAATAGCTTCGATTAATAAAATGGAACCTTATAAAGCAGACGTCACAGACTTAAGCTGTAAATTGTGTGACACTCCAATAGATAATATAAAAAGTCTTATAACACACTTATTTGAAAAGCACAAAAAGAAAATCAACCATACTGACATCGATTCTTCAAtccttccgttcaaaattaacgtagatgattataaatgcgctgtgtgtgatgaaaaatatacggattataaaacgctcaatcatcatatgaacgtacattacccaagatttgtttgcgaacaatgcggatctggcttcgtcactgcaatgagactaaaggcacacgtctttagacatgaaactggcttctatccatgcaacacctgtgacaaagtgtttagctcaaaacattcgatgcactcacaccatgctcgcatccacatgaaagctaaaactcgccgatgcccgcagtgtcctgagaaattctcaaatgttgtccaaagaatgaatcatttagcttcgattcacggtagaaagttggatgaattcaaatgcagtttgtgtccgaaagtgtttgctctcaaaggtcgtgtccgtatgcatattcgcgctacacacctaaaagagaaacgtcacgcctgtaacatatgcgatgctcaattcttcggtaaaagcgagttaacaaagcacatgtgtatgcatactggggagaagaagtatcaatgtagtacatgccaaaaagcgtacggtagaaattatcaccttctgaggcatatgaaaacacatGTACAATAA
Protein Sequence: MHEDIKMYETSRALRKTTEMLKVDITDVSCKLCDTMIDSFNNLKIHLIKIHNHNSNLLSDDGTITFKLNPGSFKCGTCDVDFPEYMTLFRHLKSHFQKYVCETCGAGFVSHNAMRTHNTTHETGSFSCTVCDKVFRTKQTRDQHKKVVHMKVKLNRCSYCSETFMNYVQKLNHIFTVHGIKIKEFKCEICPRVFTMKGRLTRHVRTTHTKEKLHTCEVCTVKFGTKATLKEHMLKHTGEKNHRCQICHKAFGRKFTLQEHMRIHLNDRRRAVVDHTSVLVLGIEEPSNEIQEDIFTNIDTKRQVNQVNRDKRRRILVLLECSRMLLFKQKGVLFMCIYCDQKYTDPAKLRQHNIEHDDVKPIEIKKAIASINKMEPYKADVTDLSCKLCDTPIDNIKSLITHLFEKHKKKINHTDIDSSILPFKINVDDYKCAVCDEKYTDYKTLNHHMNVHYPRFVCEQCGSGFVTAMRLKAHVFRHETGFYPCNTCDKVFSSKHSMHSHHARIHMKAKTRRCPQCPEKFSNVVQRMNHLASIHGRKLDEFKCSLCPKVFALKGRVRMHIRATHLKEKRHACNICDAQFFGKSELTKHMCMHTGEKKYQCSTCQKAYGRNYHLLRHMKTHVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -