Ecor009623.1
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- -
- Assembly
- GCA_947095575.1
- Location
- OX352714.1:3995240-3996931[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.7e-07 3.9e-05 24.0 0.8 2 23 100 122 99 122 0.95 2 14 0.0022 0.11 13.1 3.0 2 23 129 151 128 151 0.95 3 14 0.0022 0.11 13.1 1.9 2 23 158 180 157 180 0.93 4 14 1.7e-06 8.7e-05 22.9 1.1 2 23 188 210 187 210 0.96 5 14 1.8e-05 0.00088 19.7 0.1 2 23 217 239 216 239 0.95 6 14 0.014 0.68 10.6 1.5 1 23 246 269 246 269 0.96 7 14 0.00012 0.0058 17.2 1.7 2 23 276 298 276 298 0.96 8 14 2.6e-05 0.0013 19.2 3.5 1 23 311 333 311 334 0.96 9 14 2.6e-06 0.00013 22.4 0.2 2 23 347 369 346 369 0.94 10 14 0.00023 0.011 16.2 1.2 2 23 375 397 375 397 0.97 11 14 0.037 1.9 9.3 3.1 2 23 405 427 404 427 0.92 12 14 3.8e-05 0.0019 18.7 1.7 1 23 432 454 432 454 0.98 13 14 0.00016 0.008 16.7 0.9 1 23 460 483 460 483 0.96 14 14 0.0016 0.079 13.6 0.2 3 20 517 534 515 536 0.93
Sequence Information
- Coding Sequence
- ATGGAACAAGTCTTCATAAAAATAGAAATTAAGCGTGAGGATGCAAGTGAAGATGAAAAGAATGAAGACAAATTAAAACTACATTCAGATCATAAAGATGGTTCCAGTGATTGCATCTTAATAAAAAGTGAATTTAACAAAAATGATAATGAATCAGAAACAAATGCCCATAAAAATAATATTGGATCATTAGAACCTCAGGATGTTACTTATGACAACGAATTTCATTCTCCTCCTCTCTCTAAAGAATTAGTAGTAAACGGAAATGTATATCAAAATGGTAAAATAAACAGAGTGCCCTGCAGCCAATGTGACAAAACTTTTAAAAACAGAGCTAATTTAAAAAACCACTTAAAATATGTGCATTCTGGAGAACATAGTGTTGAATGCACACAATGTTTCCGCATTTTTAAATCTCATGTACATCTACGGTCACATGTTATGTCTGTGCATGCTGTACCAAATGAAGTGAGCTGCCCTACTTGCCATAAAGTATTTCTTAACCAAAAGAAACTACAGAACCACATCTATTACAGTCACCCCCAGCCAAATGAACAAGTCACATGTACTGTATGTTCAAAAACATACAAATCTCAATACAATCTTAAAGTTCACATGAAGCAAGTCCACCCTGAGGGCAAGTCTGTGCCGTGTCCATACTGTGATAAGTCATTCAAAGTTGATATGCTGCTACAAAGACATATAAAATGGGCCCACCCTAATGATGGAATGATCTACAAATGCCCTCAATGTTTTAAAGTGCTACCATCTATTGCTTGCTACAAGAAACACATTGAAAACACACATAATGCTTCAGCACGAGCTACTTGTGAACTCTGCAACCGGATTTTCAAGACAAAAAAATCTCTAGATCGCCATTTAAAAAATGTTCACAATAGGAAGGAAGTCAAACCTTATGTCCCTAGACAATTTGTGTGTTCGTACTGTGAGAAGAGTTTTGAGAGCAATACGTCCTTGTTTTGGCATACACAAAAGCACCACCTTGCTTCAGAGTGCGACATGGATAGTTCTAATACCTACTGCGAGATTTGCGACAAGTCTTATTCTGACAACGCTTCGCTACAACGCCATTTGGCGTCAGTACACTCATTAGAAACAGCTACTTGTCACATCTGCATGAAGGAGTTCAAATCGGCCATCAACCTACAAGGTCACATGAGGATTACCCACGCGCCGCCAGAGGCTACTCAGACCTGTGATATTTGCAAGAAAACTTTTAAGTGCGCCCTACACTTACGAATGCATATCAGCGCTGTGCACACTGAAGGAGAATTCAACTGTGATGTTTGTAACAAAATTTTTACATCAGTCAAGTATTTAGCGAAGCACAAGAAAACACACTTACAAACCAGAGAGCATCCTTGCGATATTTGCGGTAAAATGTTTAAGAACGTATTTGCAGCTAACAAGCATAGACGGAATGTTCATGGAGGCGTCAAATGCCACTTTTGCCATATCAAGCAGGCAAAGTTAGACAAGCACCTACTAAATTGTCCTAAACGTAACACTGAGGTAAGGGACTCCATCTGTGTCAAATGCGAACGCACTTTTACGAATAATACAGAACTTCATGAACATATATTAGGCTGTGGAATTGAGAGCATTGATCCTATTGTTAAAATTGAAGAGGTTGATTCAGATGAACCAATGACAACTTATAATAGTAATTAA
- Protein Sequence
- MEQVFIKIEIKREDASEDEKNEDKLKLHSDHKDGSSDCILIKSEFNKNDNESETNAHKNNIGSLEPQDVTYDNEFHSPPLSKELVVNGNVYQNGKINRVPCSQCDKTFKNRANLKNHLKYVHSGEHSVECTQCFRIFKSHVHLRSHVMSVHAVPNEVSCPTCHKVFLNQKKLQNHIYYSHPQPNEQVTCTVCSKTYKSQYNLKVHMKQVHPEGKSVPCPYCDKSFKVDMLLQRHIKWAHPNDGMIYKCPQCFKVLPSIACYKKHIENTHNASARATCELCNRIFKTKKSLDRHLKNVHNRKEVKPYVPRQFVCSYCEKSFESNTSLFWHTQKHHLASECDMDSSNTYCEICDKSYSDNASLQRHLASVHSLETATCHICMKEFKSAINLQGHMRITHAPPEATQTCDICKKTFKCALHLRMHISAVHTEGEFNCDVCNKIFTSVKYLAKHKKTHLQTREHPCDICGKMFKNVFAANKHRRNVHGGVKCHFCHIKQAKLDKHLLNCPKRNTEVRDSICVKCERTFTNNTELHEHILGCGIESIDPIVKIEEVDSDEPMTTYNSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -