Ecor001129.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Electrophaes corylata
Gene Symbol
-
Assembly
GCA_947095575.1
Location
OX352720.1:6922432-6936727[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 5.2e-05 0.0026 18.3 6.9 1 23 191 213 191 213 0.98
2 13 7.6e-06 0.00038 20.9 0.5 2 23 226 247 226 247 0.97
3 13 0.0014 0.069 13.8 5.3 2 23 256 277 256 277 0.98
4 13 0.00038 0.019 15.5 2.1 1 23 283 305 283 305 0.98
5 13 1.6e-05 0.00081 19.8 1.4 1 23 311 333 311 333 0.98
6 13 1.9e-05 0.00096 19.6 8.6 2 23 340 361 339 361 0.97
7 13 3.3e-05 0.0016 18.9 0.8 1 23 367 389 367 389 0.97
8 13 2.7e-06 0.00014 22.3 1.6 1 23 395 417 395 417 0.99
9 13 0.00016 0.0079 16.7 0.7 1 23 423 445 423 445 0.99
10 13 0.0011 0.054 14.1 1.5 1 23 451 473 451 473 0.97
11 13 2.3e-05 0.0011 19.4 2.2 1 23 479 501 479 501 0.98
12 13 4e-06 0.0002 21.8 1.2 1 23 507 529 507 529 0.99
13 13 0.00015 0.0076 16.8 3.2 1 23 612 634 612 634 0.99

Sequence Information

Coding Sequence
ATGGCTGGAGTTCCCGTGAAAAGACGTAATTTGAAGTTTGATAAGATATGCAGAGCATGCCTGGAAGTAAAAAGGGACATGCGTCCACTGTTCGAACAGCTGACTGCGACGATGCTGATGGGCATTGCGAAAATAGAGGTTTCAGTGGGAGATGGTCTACCGTCGCAGTTATGCCTACAGTGCGTGCACCAGATTTCTCGATATAACGCCTTTAAGGATCTCGTGGAGAGAAATGACGTCACTCTACGAGATCACGCCAATTGGCTGGCTCAGGAGGCGCAGAAAAGGGAAAGGGAAGAGAAAGATAAGGCTCTCCTAAACATGGCGTGCAATGACAACTACATGCAATACATAGATGGGCCCCTCACCAACTCCAGTCAGATCCTGGAGGGGTTCTTTGCACCCACACCAGACCAGACCCCAGTGCCAGGGGAAATGGAGAACACAGAGGAGAAGCCATCTGCAGCAGTCGCTACCACAGAAAAAGGCGACGAAGCTATGAACTCTGATGAGGAAAATTACATGCAACTAGTGGTATTCCAAGCCACTTCTTCAGTTGCCCCGGGACGCCATGTCTGCAACCTCTGCCATAAGGAGTTTAAGCACGCGAGATGGCTCAAGCAGCACATGAGATCACATACTAACTGGATCAAGGCAAACTGTAAGAAGCCGCCAAGCTGCTCCATTTGTGAGAGGACTTTTAAGGGTCCAGGAATGTTGAAAATGCACATGCGGACTCACGAACAACGTCCGGCAAAGCAGCCGACTTGCTCAGTCTGCCAACGCACCTTCCATACGAAGACCTTACTCTACCGCCATCGTCAAACTCACTTCGAGCAGAAAACACATCAGTGCACGGTGTGCGAGAAAAGGTTCTTTAGTGGCTACGCTTTAAGGTCGCATATGGCTCGGCACAGAGGCGAGAGACCGTATGTGTGCTCCAATTGCACGAAGAGTTTCTACAACCCTACTGATTTGAAGGTTCATTTCCGCCTGCACACTGGCGAGAAGCCCCTCAAATGCACGGAATGTAACAAGACGTTCCGACGCCACTCCACACTCTGCCAGCATATGAAGAAGCATCGCGGCATCCGGAACCACATTTGCACTATCTGCACTAAGGCGTTCTATGAGGTCTCCAAGCTGAACGCTCATATGAGAGTGCATACTGGCGAGCGTCCATACGAGTGTCAATACTGCACGCGTCGGTTTGCTCAGCAATCAGCATTGATCTACCACCGGCGAACACACACCGGTGAGAAACCTTACACCTGCAAGCTGTGTCCAGCCAAGTTTACAACCTCCTCGGCAAGAAATAACCATCTTATCACGCATACTGGAAACAGGAGGTTCGTTTGTCCAATTTGCTTCAAAGGCTGCATCTCCCGTACAGAGTTACGAGTCCACACGACCAAGCATACAGGCGAGAAGCTGTTCGAGTGTGAGATCTGCTCTCAGCGGTTCAGCTCTTCGTCGTACCTAGCGGTACATCGCCGGCATCACACGGGAGAGAAGAAGTACCAGTGCAATGTGTGTGGCAAGGGTTACATAGAATCAAACTCTTATAAGAAGCATATGAAGACTCACAAACAGAAGCCAGAAGAGGCAGTGCCCAACGCAGACTTATCTTGCTCCTGCACAAATGCGCAGGAGCAGGATAAAAAAGATCCACTAGTCACGGAAAGTCAACCTACTGCTAATGAGGTGCCAAACGACACTGCACTTGTCGCTCAAGTTCAAGCAGTACAACAAGAGGCAAGCGTCCAGAATCAGGAGAGTGTACTGACAGTACAAGGCACGCCACCGCCCGTCCAGGCGACGCACCAGAAGCGATACAAATGTGGTGTCTGCGTCAAGACTTATATGTACCTACATAGCCTGAAGAAACATATGATGACGCATATACAGCCAGCTCaacaagcgcagcaacaacaacaacaacactcacaacagcaacaacaaaactcacaacaacaacaacagcaacaacatcagcaacaacaacaacagcagcaacaacaacaacaacagcaacagcggcagcagcagcagcagcagctacagcaacaaattcagcctcaacaacaAGTGCAGGTGCAGCAAGTGCAGCACATGCACCATCAGCAAATGCAGCAGATGCAGCAGATGCAGCAGCAGGTGCTGCAAGTCAGCGGCGTGCAGCAGCTCACTGTGCCGCTGCACCAGCAGCTACCGCAAAGCATCACCGTCTCCGGCGTGCAGCCCGGCCAGCACGGGTACCCGGTGATATCCTCTGTACAATCGCTGCAGCTTCAACAGACTCAACAGGTTAACACGCAACCCCAGCAGCTTCACGTACAAACGATACAAATCCATCCGCAGCAACAACATCAACCAATACAAATTCATGCTGTGGGCGTCCAACAAGTACAGCAACAACAATTGCACGTCGCGACTTCTTCTTGCCAAACTATGCTGCCAAACATACTGCAGCTACAACCAGCCACAGTGGTGTCAGGTCTCGGCCAGCAGGAGTTGGGCGGTGTGGCACATCGTATTATACTTCAACAGCAACCGCAGCAATCGCATCCTCAAGTCTACACCATTCACCATTAA
Protein Sequence
MAGVPVKRRNLKFDKICRACLEVKRDMRPLFEQLTATMLMGIAKIEVSVGDGLPSQLCLQCVHQISRYNAFKDLVERNDVTLRDHANWLAQEAQKREREEKDKALLNMACNDNYMQYIDGPLTNSSQILEGFFAPTPDQTPVPGEMENTEEKPSAAVATTEKGDEAMNSDEENYMQLVVFQATSSVAPGRHVCNLCHKEFKHARWLKQHMRSHTNWIKANCKKPPSCSICERTFKGPGMLKMHMRTHEQRPAKQPTCSVCQRTFHTKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPYVCSNCTKSFYNPTDLKVHFRLHTGEKPLKCTECNKTFRRHSTLCQHMKKHRGIRNHICTICTKAFYEVSKLNAHMRVHTGERPYECQYCTRRFAQQSALIYHRRTHTGEKPYTCKLCPAKFTTSSARNNHLITHTGNRRFVCPICFKGCISRTELRVHTTKHTGEKLFECEICSQRFSSSSYLAVHRRHHTGEKKYQCNVCGKGYIESNSYKKHMKTHKQKPEEAVPNADLSCSCTNAQEQDKKDPLVTESQPTANEVPNDTALVAQVQAVQQEASVQNQESVLTVQGTPPPVQATHQKRYKCGVCVKTYMYLHSLKKHMMTHIQPAQQAQQQQQQHSQQQQQNSQQQQQQQHQQQQQQQQQQQQQQQRQQQQQQLQQQIQPQQQVQVQQVQHMHHQQMQQMQQMQQQVLQVSGVQQLTVPLHQQLPQSITVSGVQPGQHGYPVISSVQSLQLQQTQQVNTQPQQLHVQTIQIHPQQQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPATVVSGLGQQELGGVAHRIILQQQPQQSHPQVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00663314;
90% Identity
-
80% Identity
-