Egri043297.1
Basic Information
- Insect
- Eilema griseolum
- Gene Symbol
- -
- Assembly
- GCA_963662185.1
- Location
- OY759257.1:8851425-8866484[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.089 11 8.1 0.1 1 23 206 229 206 229 0.96 2 13 0.017 2.2 10.3 1.5 1 23 236 258 236 258 0.95 3 13 0.00069 0.089 14.7 0.8 1 23 324 346 324 346 0.97 4 13 0.0079 1 11.4 1.3 3 22 358 377 357 381 0.89 5 13 0.00025 0.032 16.1 0.3 1 23 422 444 422 444 0.98 6 13 0.022 2.9 9.9 0.9 2 22 453 473 452 477 0.91 7 13 5.4e-05 0.007 18.2 0.4 1 23 485 508 485 508 0.91 8 13 0.0012 0.16 13.9 3.5 1 23 514 537 514 537 0.96 9 13 0.00027 0.035 16.0 2.0 3 23 546 567 544 567 0.91 10 13 0.04 5.1 9.2 2.1 1 23 573 596 573 596 0.97 11 13 0.04 5.1 9.2 2.1 1 23 665 688 665 688 0.97 12 13 0.04 5.1 9.2 2.1 1 23 757 780 757 780 0.97 13 13 0.04 5.1 9.2 2.1 1 23 849 872 849 872 0.97
Sequence Information
- Coding Sequence
- ATGGATACGGAAGACAATAACTTGTGTTGTGGTTGCCTGTGTTTCGGGCGTAAAATGATACAATTAAACGAACGCCACCTAAAAGAATGTTTTATGCAGATTGTAAATGAAATATCCATGCCACTAGTGGAGGGGTCATATGAGTTACCAATATGGCTTTGTTGGGAGTGCGGTGCTCGGATCCATCGCTTCACAAAATTTACCGAACAAGTCAAGAACTCATACAATATTTTCAATCAATATCTTAAGGAAAGTACAgacaaatcaatattaaatttacattcAATCACAAGACTAACCTCACAGACATTGTATAACATAAGCATAGAGGTCACAGAAGACACAGAGTCTTCTGCCACGAccatagaaataataaaacccATTAACCACAGAGAACCATCACCCGATCCAAGCATAAAAGAAGAATATGACAATACGTTTCCAGATACAAATTCTGATGACGAAAAACTCATAGACATATCCCGAAAGATAGCcaaaatcaaaaagaaaaaaaagaagaagattgTTATGTATAAAGAGATAGAGTTGAAAAGGAAGGAGTTGGAGGAAGAAAGAAGACTAGCCGCCTTGAAAGAAGACTATGTGAATGCAATGTTTAGATGTGAGAGGTGTATTGTGTCGTTTCCTAATGCAGAAGATTTAAGTGATCATTTGAGTATTAAACATGAACTGAACGCGTCGCACTACAAGTGCGCCATCTGCGAGTGCTCGTTCAGCAGCGAGGTGTCGTACAACTACCACGCGGGCAAACACTCGCGGCGCTACCAGTGCATCGTGTGCAAGGAGCGCCACCGGAGCAAGAGAGGCGTCCTCAAGCACTTCGAGCAGACACACTACCACGGACCACCAATAGGGTTCGAGATACAGGACCAGCCGTACAAGAATGGGTTGGAAACGAACGATACCACAGAGGCAAAGGTTAACAGCGCCACACAGCCGGCGGCGACATTCCCCTGCGAGTTCTGCGACAAGATCTTCAGGTGGAAGACGTCACTGAGAAAGCACGCGGAGACGCATCGCATCGCGACCGGACAGAAGAGGAAGCCGTACTGCGAGCCGTGCAGGCTATCGTTCACTACAACTTCTAATCTCCAGAAGCACGTGAAGACCAGCTCAAAGCACCAAATACAGTTGAAACTTAGGAAACTAACCGAGAGTCTTCCCGAAGACCCTTCGAACCCTGAGAAGCACCAGGCACACGTGGAGGCCATCCGTTCTTCCGTGAACAACGCGCGCCGCCAATACCCCTGCCCGCAGTGCGACAAGAAGTTCCAGTGGAGAGGCAACCTGCTGCGGCACGTCAACAGCCATGTGGCCAGAGCCAATGGCGAGCTGGTGTGCAAGCCATGCAATAGAACATTCTCGTCGATAGCAACCTACAAGCAACATATGAAAATAAGCAAGAAACATGTCAGCGAAAACGAATTCAAGTACATGTGCACCGAGTGCGGCAAGCGGTTCGCGAACAAGACGCGGCTCAAAGACCACGTGGACTGGGAGCACCTCAAGAACTTCGTGCACACCTGTGGCGTCTGTCAGAAGGTGTTCAAGAGCCACACGTCGCTGTACCTGCACAGACAAGTGGTGCACAAGAAGGACAACGCAGAACACCTGTGCGACCACTGCGGGAAGCCCTTCCCGAACCACGCCAAGCTCCGCTCGCACATCGCCGCGCTGCACAGCGGCGCGTCCGCCTACAAGTGCGCGGCGTGCGGCGCGAGCTTCAGCTGGCACTCGTGCCTCTCCAGGCACGCCAGGAAAGTGCACGCGCCGCGCACCCACCCACTACCCAACACGCCAGGAAAGTGCACGCGCCGCGCACCCACCCACTACCCAGTACCCACTAGCGCCCCACTACAAGTGCGCGGCGTGCGGCGCGAGCTTCAGCTGGCACTCGTGCCTCTCCAGACACGCCAGGAAAGTGCACGCGCCGCGCACCCACCCACTACCCAGTACCCACTAGCGCCCCACTACAAGTGCGCGGCGTGCGGCGCGAGCTTCAGCTGGCACTCGTGCCTCTCCAGACACGCCAGGAAAGTGCACGCGCCGCGCACCCACCCACTACCCAACACGCCAGGAAAGTGCACGCGCCGCGCACCCACCCACTACCCAGTACCCACTAGCGCCCCACTACAAGTGCGCGGCGTGCGGCGCGAGCTTCAGCTGGCACTCGTGCCTCTCCAGACACGCCAGGAAAGTGCACGCGCCGCGCACCCACCCACTACCCAGTACCCACTAGCGCCCCACTACAAGTGCGCGGCGTGCGGCGCGAGCTTCAGCTGGCACTCGTGCCTCTCCAGACACGCCAGGAAAGTGCACGCGCCGCGCACCCACCCACTACCCAACACGCCAGGAAAGTGCACGCGCCGCGCACCCACCCACTACCCAGTACCCACTAGCGCCCCACTACAAGTGCGCGGCGTGCGGCGCGAGCTTCAGCTGGCACTCGTGCCTCTCCAGGCACGCCAGGAAAGTGCACGCGCCGCGCACCCACCCACTACCCAGTACCCACTAGCGCCCCACTACAAGTGCGCGGCGTGCGGCGCGAGCTTCAGCTGGCACTCGTGCCTCTCCAGGCACGCCAGGAAAGTGCACGCGCCGCGCACCCACCCACTACCCAGTACCCACTAG
- Protein Sequence
- MDTEDNNLCCGCLCFGRKMIQLNERHLKECFMQIVNEISMPLVEGSYELPIWLCWECGARIHRFTKFTEQVKNSYNIFNQYLKESTDKSILNLHSITRLTSQTLYNISIEVTEDTESSATTIEIIKPINHREPSPDPSIKEEYDNTFPDTNSDDEKLIDISRKIAKIKKKKKKKIVMYKEIELKRKELEEERRLAALKEDYVNAMFRCERCIVSFPNAEDLSDHLSIKHELNASHYKCAICECSFSSEVSYNYHAGKHSRRYQCIVCKERHRSKRGVLKHFEQTHYHGPPIGFEIQDQPYKNGLETNDTTEAKVNSATQPAATFPCEFCDKIFRWKTSLRKHAETHRIATGQKRKPYCEPCRLSFTTTSNLQKHVKTSSKHQIQLKLRKLTESLPEDPSNPEKHQAHVEAIRSSVNNARRQYPCPQCDKKFQWRGNLLRHVNSHVARANGELVCKPCNRTFSSIATYKQHMKISKKHVSENEFKYMCTECGKRFANKTRLKDHVDWEHLKNFVHTCGVCQKVFKSHTSLYLHRQVVHKKDNAEHLCDHCGKPFPNHAKLRSHIAALHSGASAYKCAACGASFSWHSCLSRHARKVHAPRTHPLPNTPGKCTRRAPTHYPVPTSAPLQVRGVRRELQLALVPLQTRQESARAAHPPTTQYPLAPHYKCAACGASFSWHSCLSRHARKVHAPRTHPLPNTPGKCTRRAPTHYPVPTSAPLQVRGVRRELQLALVPLQTRQESARAAHPPTTQYPLAPHYKCAACGASFSWHSCLSRHARKVHAPRTHPLPNTPGKCTRRAPTHYPVPTSAPLQVRGVRRELQLALVPLQARQESARAAHPPTTQYPLAPHYKCAACGASFSWHSCLSRHARKVHAPRTHPLPSTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -