Egri042409.1
Basic Information
- Insect
- Eilema griseolum
- Gene Symbol
- -
- Assembly
- GCA_963662185.1
- Location
- OY759257.1:428791-444590[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.67 87 5.3 0.1 5 23 306 325 305 325 0.94 2 18 5.6e-06 0.00072 21.3 5.0 1 23 331 353 331 353 0.98 3 18 0.033 4.3 9.4 5.8 1 23 357 379 357 379 0.98 4 18 0.0074 0.95 11.5 5.0 1 23 385 408 385 408 0.91 5 18 0.053 6.8 8.8 2.6 1 21 414 434 414 436 0.95 6 18 4 5.1e+02 2.9 2.0 1 15 444 458 444 458 0.93 7 18 5.2e-05 0.0068 18.2 0.5 1 21 475 495 475 496 0.94 8 18 0.00063 0.082 14.8 0.5 1 23 515 537 515 537 0.99 9 18 0.016 2.1 10.4 2.4 1 23 543 565 543 565 0.98 10 18 0.021 2.7 10.0 2.6 1 23 571 593 571 593 0.96 11 18 2.7e-05 0.0035 19.1 3.3 1 23 599 622 599 622 0.97 12 18 1.8e-07 2.3e-05 26.0 1.2 1 23 628 650 628 650 0.99 13 18 3.3e-05 0.0043 18.8 2.5 1 23 654 676 654 676 0.99 14 18 0.0074 0.95 11.5 5.0 1 23 682 705 682 705 0.91 15 18 4.4e-06 0.00057 21.6 0.4 2 23 712 733 711 733 0.96 16 18 7.2 9.3e+02 2.1 1.9 1 14 739 752 739 753 0.88 17 18 0.01 1.3 11.0 5.2 1 23 760 782 760 782 0.98 18 18 1.3 1.6e+02 4.4 0.3 1 12 787 798 787 800 0.89
Sequence Information
- Coding Sequence
- ATGGAGAAGCTCACGATATGTAGAGTGTGTCTGACGGAAGACGGCCAGATGCATTCTATAACTAACACGCATCTTCAAGAAACGTACCAGGCCCTAACAATGACATCGACACAAGACGCCAGCCTTGTACACGCCTGCTACATCTGCCGTGCGCGTCTGCAGAACTGCTATCAGCTCCAGAAACAATGTCTTCAAAGCCAAGAGTTGTTCTCGCAGATGTTGATAGACAAGTCGGTAAATCTCTCAGGGAAGTCTACAAAACGTTTGAAAGTGATGACCGTAATTCAATTGAGCATGGGAGGTGTGCTGCAGAAGAAGAGACAGGCTGGTGTAAAACTGGAGACACCAGAACTGCTCAGTGATGATGGGAAGATACATGGCACAGAAGACAAGCTATCAGAAGAGAACGGCACAGAAGGAAAGAAGAAACGTTCGAAAGCAGAAGATGATAACGCTCCCTGTGTGGTCAAGAGCGAACCGCGATACGATCTAACAGAAAACGACGCTGCTCCGGAACCTTGCGAGGAGTCGGAGGAAGATGATGTGCCGCTCATCATTCTGAAGGAAGACCACCCCAGCACACGCACTCCCGTACCTGAGATGGCAACACCAGCAGAGCACAAAGAAGGAATAATATTGAAACATGCCGTGGTCAGGTTAGAGAGACTCGGATGGGACGTCGTTAAAGCTGCGCATTTGCGCAACACTAGTGGAGTGAACGACAAAGAGCGAGCTGTACAAGAAAATGTTGTCCATGACAATGACGCCAGTCGCGATAGCCTTGGTGTCTTCGATGATGAAGCTGATAGCATTGATGGTGATGACGCAAAACGGTACCCGAGAACAACTGGCGGTAGAAgtaattttggaaaatattcAGCTACCCACAATACTGAAAATAATTATCAAAGTGGTGTATGTAAAAATACCTTCACGACAGAGCTGCGCTTGCGAGTCCATATCCAACGCGTGCACAAGGCTACGAAAGAACATCAGTGTAAcgtatgtaagaaatatttcaaaagGAAAGACACTTTGAGAACTCATATGAACATACATGCTGCTTTATATCAATGTGAagtgtgtaaaaaatgtttgAGTTCACAGTTCCAGTTAGATTGCCATATGCGCTTACACACCAATGTAAAACCATTCCAATGTGAAGTCTGCAAAAAGTGTTTCAGGAGAGAAGACGCTTTAAAGTGTCATAATATGCGCGCGCACACTGGCGAGAGACCATATCAATGTTCTTTATGTGATAAAGGTTTTCTTAAACGACGTcctttaaatgttcatatgcgTTGTCACAGACAGCAAGCGCGCAAACCTTTTGAGTGTAAAGTTTGTAACGGATACTTCAAAAATAAGCACAATCACTCTGATTCGAAGTTACATCAAGATGAAGGAAATGATGTGAAAAGGTATCAGTGCGATGACTGTGGCCACAGCTATAGCAATAAAGGGAGCCTTGCCAGTCACAAACTTAGACCATGTTTTGGTAAACGACCTCAGGCGCGCCTGCCCCCTGTGTACAGAAATCTATATCAGTGTAATGTATGCGAAGAAAAATTCGTTCTTAAAATTTCATATGAAAATCATGTTCGTTCTCATACGGGAGAAAAACCTTATTCATGTGATATTtgtaaaaaaggttttatttggAAGTCTGTGTTGAAATGTCACATGCGTACACACACTGAAGAGAAACGGTTCAGTTGTAATCAATGCGGTAGAACTTTTCACGATGAAAATATTTTGAGAATACACACCTTCACTCACAGTATTGGAAGTGATTATCAATGTGATGTGTGTAAGAAATCTTTCAGGTCAAAGCTGCACTTAGCAAACCACAAAAATCGCGTGCACAGCGTGGTGAAACAATATCAGTGCGACGTATGTAAGAGAGTTTTCAAACGGAAAGAGTCTTTGATAACTCATATGAACATGCACTCTACCTCTTATCAATGTgaagtgtgtaagaaatgtttgaCTTCGCAGTTCCAGTTGGATGCCCATATGCGCTTACACACTAATGTAACACCATTCCAATGTGAAGTCTGCAAAAAGTGTTTCAGGAGAGAAGACGCTTTAAAGTGTCATAATATGCGCGCGCACACTGGCGAGAGACCACTTCATTGTTCCATATGCGATAAAGGCTTTATTAAACGAGGTGCTTTAAATGCTCACATGCGCGTGCACACTGGAGACAAACCGTATAAATGTGAAGTGTGTAACGGATACTTCAGCTATAAGCACCAGCACTCTGACCCGAAATTATACCAATGTAAAGTGTGCAATAAATACTTCAAACTAAAGAGTTTACATTCGCATATAAGGTCGAAGCACGGGGATCAAAAATATCATTGCGATGTATGTCAGAAAGGTTTTCCTAgtttgaggcgaaaagtccaaaccctccataaggaaatgcagatgaccgaagacaaaggtccaaagaaaagatccaaaggcaaaaagagaaaaagtccaaaggaaaatgagaaaagagaaaaagacggttccaatttggaaacctgtaacaaaattgcatgtcattag
- Protein Sequence
- MEKLTICRVCLTEDGQMHSITNTHLQETYQALTMTSTQDASLVHACYICRARLQNCYQLQKQCLQSQELFSQMLIDKSVNLSGKSTKRLKVMTVIQLSMGGVLQKKRQAGVKLETPELLSDDGKIHGTEDKLSEENGTEGKKKRSKAEDDNAPCVVKSEPRYDLTENDAAPEPCEESEEDDVPLIILKEDHPSTRTPVPEMATPAEHKEGIILKHAVVRLERLGWDVVKAAHLRNTSGVNDKERAVQENVVHDNDASRDSLGVFDDEADSIDGDDAKRYPRTTGGRSNFGKYSATHNTENNYQSGVCKNTFTTELRLRVHIQRVHKATKEHQCNVCKKYFKRKDTLRTHMNIHAALYQCEVCKKCLSSQFQLDCHMRLHTNVKPFQCEVCKKCFRREDALKCHNMRAHTGERPYQCSLCDKGFLKRRPLNVHMRCHRQQARKPFECKVCNGYFKNKHNHSDSKLHQDEGNDVKRYQCDDCGHSYSNKGSLASHKLRPCFGKRPQARLPPVYRNLYQCNVCEEKFVLKISYENHVRSHTGEKPYSCDICKKGFIWKSVLKCHMRTHTEEKRFSCNQCGRTFHDENILRIHTFTHSIGSDYQCDVCKKSFRSKLHLANHKNRVHSVVKQYQCDVCKRVFKRKESLITHMNMHSTSYQCEVCKKCLTSQFQLDAHMRLHTNVTPFQCEVCKKCFRREDALKCHNMRAHTGERPLHCSICDKGFIKRGALNAHMRVHTGDKPYKCEVCNGYFSYKHQHSDPKLYQCKVCNKYFKLKSLHSHIRSKHGDQKYHCDVCQKGFPSLRRKVQTLHKEMQMTEDKGPKKRSKGKKRKSPKENEKREKDGSNLETCNKIACH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -