Egri039312.1
Basic Information
- Insect
- Eilema griseolum
- Gene Symbol
- -
- Assembly
- GCA_963662185.1
- Location
- OY759253.1:19045943-19049471[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.025 3.2 9.8 1.2 1 23 10 32 10 32 0.99 2 21 0.028 3.6 9.6 0.0 2 23 58 80 57 80 0.93 3 21 0.029 3.8 9.6 0.1 2 23 103 125 102 125 0.96 4 21 5.5e-05 0.0071 18.2 1.2 3 23 134 155 133 155 0.98 5 21 8.2e-05 0.011 17.6 0.4 2 23 161 183 160 183 0.95 6 21 0.002 0.25 13.3 0.8 2 23 189 211 189 211 0.97 7 21 0.052 6.7 8.8 4.0 1 23 217 240 217 240 0.95 8 21 0.27 34 6.6 0.5 1 23 246 268 246 268 0.94 9 21 0.037 4.8 9.2 1.3 1 23 280 303 280 303 0.94 10 21 0.00061 0.079 14.9 1.1 2 23 311 333 310 333 0.97 11 21 0.9 1.2e+02 4.9 0.2 1 23 338 360 338 360 0.90 12 21 1.8e-06 0.00023 22.8 0.3 1 23 366 388 366 388 0.96 13 21 0.014 1.8 10.6 1.0 1 23 479 501 479 501 0.98 14 21 0.16 20 7.3 0.1 2 22 527 547 526 549 0.89 15 21 0.92 1.2e+02 4.9 0.6 3 23 573 594 573 594 0.93 16 21 0.00017 0.022 16.6 0.6 3 23 602 623 601 623 0.98 17 21 5e-05 0.0064 18.3 1.8 3 23 630 651 629 651 0.97 18 21 0.047 6.1 8.9 2.8 1 23 657 680 657 680 0.97 19 21 0.00083 0.11 14.4 2.2 2 23 687 709 686 709 0.95 20 21 0.032 4.1 9.5 1.3 1 23 715 737 715 737 0.93 21 21 0.016 2.1 10.4 1.2 1 23 743 766 743 766 0.91
Sequence Information
- Coding Sequence
- ATGCCGTTTCGGTGGTTGAGAAGTTCTTACAGATGTTTTTACTGCTACGATATTTTTCAACAAGTGTCGGAGCTGAAGGATCATCAAGAAACACACACGGAAGATCTGATAAAGACACAAGCTATGAGCAAATATTTAGAGCCTGTAGTTTACGTCGACGTATCTAACCTATCGTGTAAATTGTGCCCAGAAAAAGTCACTGATCTATATGATTTGATTGACCATTTAGTTGTGGAACATGGAGTCGCATACAATAAAGATGTTGAAAAATTTTTGGTGGCGTTCAAACTGGATAGTTTATCTGTTACTTGCGTGACTTGCGGTGCGGgtttttattcatttgcttCTTTACTAACCCATACCAATAAAGATCACAAGCATAGTTCAGCGCAAATTCTGTGTGAAGTTTGTGGACAGCATTTCAGGAATCCTACATTATTGAGTCGTCATCTCAAAAGAGTTCACGAGAACACTGGTGTTGTATGTCTTAAGTGTGGCGAAAAATTCACAAGCGCGGCTAAATTAAGAACACATCAAAAGAATGAACATCTGAATAAAAAGCGCAAATGTTCCATTTGCTCTGAAGTTTTTGATACTTATACCCAGAAAACCCGGCACATGGTTACTGAACATAAGACTCGTAAAGAATTTAAATGTCCGCATTGCCCGAAAACTACCGCTTTTCGAAATGTAATGCATAATCATTTAAGGGACAAGCATTTGAACGTAGGAAACCATATTTGTGAAGTGTGCGGATGGAAAGCTCTTACCTACTATAGATTGATGGTCCACATGAATAGACATGGTGGAAAGAAGCCCGAGGGTTACACGAAACCTCATCAATGCAAATTGTGCGATGCTACTCTAGACAACGCGCACCAGATGAAGGTTCATTTAGGGAAAGTGCACAATGTGGAAAAATACAGAATTAAATGTGAACACTGTGCAAAAGTTTCCACGACAAAAAGTGAAATGATAATGCACATCCAAACGCAACATTCAGACCTAAAATATGAATGCGATATATGTGATTACAAGGCTGGAATTAAATGGCTGATTACTTTGCACAAGAGGAAGCACGAAGGGGTGAAGGAATATTTATGCAGCATATGCGAGAAACCGTTTGGCAGGTCAAATAACCTGAGAGCCCATATGAAGGTGCATTCTGGTGTTTCTGGCAAAGTATGCAGAGTAAACAAGTACCTGATATGGTCTCTAAAAGCACCTGTTTTCCTTGCAGGAGAACCTAGAGGTGGCCAGAAACAGAAGGAACCCAGTACCAATGTATCCGCTGAAGATGATTTTATCGATCGTGTGCAGTCGACTAGCAAAACCGCTTTAACAGCGAAAGAAAAACGTAGTATAATGAGAAATAACGTGGTACAAGTCCTTATAAAGTCCACTGTTATGCCATTTCGGTGGTTGAAAAGTTCTTACAGATGTTTTTATTGCTACGACATTTTCCAAGAAGCGTCGGAGTTGAAGAATCATCAAGAAACACACGCAGGAGATCAGATTAAGACACAGGCTATGAGCAACTATTGGGAGCCTGTAGTCTATGTCGACATATCAAATTTATCATGCAAATTGTGCCCAGAAAAAATCACGGACCTGTATGATTTAATTGACCATTTAGTTGCGAAACATGGAATCGTATACAATAAAGATGTTGGAATTTGTATGGTGGCATTCAAACTGGACAATTTCTCTGTCGGTTGTCTAGCTTGTGGTgcaagtttttattcatttggCCCATTACTGCATCACACTAATAAAGATCACAAAGGTACTTCAGCGATTTTGTGCGAAGTTTGTGGACAGCATTTTAAAGATGCAACATTATTGCGTCTTCATGTAAAAACGATCCACGAAAACACTGGTCTATTATGTACCGAGTGTGGCGAAAAGTTCGAAACAAGGTCTAAACTAAAAACGCATCAGAAAAACCAACAcgatttggataaaaagtaCAAATGCTTAGTGTGCTCTCAAGTTTTTCAAAGCCACTACAAAAGATCACGACACATGGCATCTGATCATAAAACCCGCCAAGAAATCAAATGCCTGCATTGTCCGAAGACTTTCGTTTTTCGAAGTATGATGATGACTCACTTAAGGGATACGCATTTAAAAGTTCGAAACCACATTTGTGGGGTGTGTGGTTGGAAGGCTTTTAACAGTAATAGACTGAAGAACCACATGTACAAGCACAGTGGGGAGAAGAACTTCAAGTGCGAGGCTTGTGATAAAGCATTTACTACTAAGAAAATAATGAGGGCGCATTTTTCCAGGATGCATAAGAGTCTACAAGCGCCTATTATGCATTACGAGCATCCTTATCTTACACAATAG
- Protein Sequence
- MPFRWLRSSYRCFYCYDIFQQVSELKDHQETHTEDLIKTQAMSKYLEPVVYVDVSNLSCKLCPEKVTDLYDLIDHLVVEHGVAYNKDVEKFLVAFKLDSLSVTCVTCGAGFYSFASLLTHTNKDHKHSSAQILCEVCGQHFRNPTLLSRHLKRVHENTGVVCLKCGEKFTSAAKLRTHQKNEHLNKKRKCSICSEVFDTYTQKTRHMVTEHKTRKEFKCPHCPKTTAFRNVMHNHLRDKHLNVGNHICEVCGWKALTYYRLMVHMNRHGGKKPEGYTKPHQCKLCDATLDNAHQMKVHLGKVHNVEKYRIKCEHCAKVSTTKSEMIMHIQTQHSDLKYECDICDYKAGIKWLITLHKRKHEGVKEYLCSICEKPFGRSNNLRAHMKVHSGVSGKVCRVNKYLIWSLKAPVFLAGEPRGGQKQKEPSTNVSAEDDFIDRVQSTSKTALTAKEKRSIMRNNVVQVLIKSTVMPFRWLKSSYRCFYCYDIFQEASELKNHQETHAGDQIKTQAMSNYWEPVVYVDISNLSCKLCPEKITDLYDLIDHLVAKHGIVYNKDVGICMVAFKLDNFSVGCLACGASFYSFGPLLHHTNKDHKGTSAILCEVCGQHFKDATLLRLHVKTIHENTGLLCTECGEKFETRSKLKTHQKNQHDLDKKYKCLVCSQVFQSHYKRSRHMASDHKTRQEIKCLHCPKTFVFRSMMMTHLRDTHLKVRNHICGVCGWKAFNSNRLKNHMYKHSGEKNFKCEACDKAFTTKKIMRAHFSRMHKSLQAPIMHYEHPYLTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -