Egri039289.1
Basic Information
- Insect
- Eilema griseolum
- Gene Symbol
- -
- Assembly
- GCA_963662185.1
- Location
- OY759253.1:18886375-18891478[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 6.9 8.8e+02 2.1 0.0 9 21 30 42 28 43 0.86 2 23 0.0095 1.2 11.1 3.4 1 23 64 87 64 87 0.96 3 23 0.0061 0.78 11.7 0.1 2 23 114 136 113 136 0.97 4 23 0.035 4.6 9.3 5.1 2 23 159 180 158 180 0.97 5 23 0.00058 0.075 14.9 2.3 1 23 259 282 259 282 0.92 6 23 0.085 11 8.1 0.1 2 23 308 330 307 330 0.94 7 23 0.34 44 6.2 1.4 2 23 353 374 352 374 0.96 8 23 0.037 4.8 9.2 1.1 1 23 378 400 378 400 0.96 9 23 0.00023 0.03 16.2 2.0 1 23 405 428 405 428 0.97 10 23 0.1 13 7.9 1.6 1 23 435 458 435 458 0.85 11 23 1.5e-05 0.0019 19.9 3.2 1 23 465 488 465 488 0.98 12 23 5.1e-05 0.0066 18.3 3.8 1 23 494 516 494 516 0.98 13 23 3e-05 0.0039 19.0 1.3 1 23 522 544 522 544 0.99 14 23 0.0071 0.92 11.5 0.8 3 23 624 645 622 645 0.90 15 23 0.0029 0.37 12.8 0.2 2 23 671 693 670 693 0.94 16 23 0.04 5.2 9.1 0.1 2 23 716 737 715 737 0.97 17 23 0.0063 0.81 11.7 0.2 1 23 741 763 741 763 0.97 18 23 0.4 51 6.0 4.5 1 23 768 791 768 791 0.94 19 23 0.36 46 6.2 0.9 2 23 799 821 798 821 0.94 20 23 0.00026 0.033 16.0 1.2 2 23 829 851 828 851 0.95 21 23 2.6e-05 0.0034 19.2 4.5 1 23 857 879 857 879 0.98 22 23 1.9e-06 0.00025 22.7 0.9 1 23 885 907 885 907 0.99 23 23 0.014 1.8 10.6 6.8 1 23 913 936 913 936 0.97
Sequence Information
- Coding Sequence
- atgacacatgGTTCTGCAGCTGAAAATATAATCGAAACTGAAGGAAACAAATCCAGTTGTGCAATACAAGTAACTGTAAAACCTGAACCATATCGTAGAAATGTGGATCTAAAAAAACATCGCATGAATATCAAAGAAGTTATGCTTTCGTCTAATGCTACGCCTATCAGACGTTGCAGCGATTTGGGGTACATGTGCTGTCACTGTACCGAACAATATCGAGATCCCGCAGAATTAAAACAACACTCATTGACAACACATCAAGATCTTGGGAAATCTTACTTTTTCAATAAATTGAGCATGGAtcgatattttataaaattagacaTCACGTCACTACAATGCAAGATCTGTGACCGAAATATTGACACCATAGAAGAATTACTGCAGCATTTGAAAACCGAACACAAGAAAGCTGTTTATACTGATATCAAAAATCATATTATCCCTTTCAAGTTCCACACCGAAACGCTCCAATGTTGTATATGCATAAAATCGTTCAGTAGATTCAAGATGCTACTAGAACATATGCATACACATTACAGAAATTACATATGTGACCAAGTTCCCGTTACAGTCAAGATAGACAAAGATGTTAGCACTCCAAAAACTAAGGTGATTAAActgaaaaatgaaaatactaATGTAAATGAAGCTATCGCACAAAAACCAAAACTGTTAAGATGGAAGAAATCTGAAAGGCATCTTAAAAATATAAGAGAGATATTGAAATGCACTAACGCTACTCCAATACGGAGATACAGTGGTGTGGGATATACTTGCTGTTATTGTAAAGAACAGTTTCCAGAAGCTAGTAATCTTAAAAGGCATACAATAGATACTCACGAAGACTTATCTCAAGCAGACTTCATGAAAGTTAAATTCACGGACTACGTGGTCAAATTAGATATTACAGACCTAACCTGTAATCTTTGTAACGAATCTGTTGATACATTGGAACAAGTTATGGAACATCTGAGGGATCAACACAAGAGAACAATATTTGTAGATATCCCTAACCATATTTTACCGTTTAAATTCAATGACGAAACTTTGAAATGTTACATgtgcttaaatatttttaacacattCAAAGCACTTCTGGAGCATATGCATATACATTATAGAAACTATATCTGTGAAATTTGTGATGCTGGATTCGTAAACAACCATGGGATCCACAACCATAAAACGTCACATAAAAATGGTTCCTACACATGCCAATATTGCCCTAAAGTCTTCAAAAGTAATAGAGATAAGAACAGCCATGAAAAAAGAGTACATATTCTTGCTCGCTACATATACAAATGTCCATATTGCACAGAAAAGTTTTacaacataaaatttaaatacgatCACATGGAAGAAGTCCACGGCACTAAGACAGCTACTTATAGGTGCAACGCTTGCgataagatatttaaaaattcaacACAATTCAAAAGACATACGAGAAGAGATCATTTACTTGAACGTCCGCATAAATGTACGGAATGTGATAAAGAATTTTTTACTAAAAAGAGTTTAACAAGTCATCTTATCTCGCATACGGGTTCTAGAGATTTCCAATGTGATGTGTGCTTAAAATCATACGGAAGGAAGAAGACGCTGAGGGAGCATATGAAAATACATAATGACGAAAGACGGTTTAAATGTCCCGGACGGGGAACTAGAGTAATCCGAATAGAAAGACCCACAAAATCAACTGTCGAACTGAAGTTTATATCAAAAAGAACCACGGGCGACAGTAGTGCCTTGAACGTTCCCGTTTTAGAGTCAACTAAACATAAGAACTGGATAAATTTGATGCACATTTTACGCAATTCTAACGCCAACCCAATACGCTGTAAGGATAGCATAGGTTACGGCTGCTCGTTTTGTGCCAAAAAGTTCCCAAAGCCCAGAAACTTGAAGAAGCATTTCCTCGCAGAGCACAATAATGACAAATTAACGAGATGCACATTTTGGAAAATGTTTGAATACGTCATTAAGCTTGATATAACAAACCTAAATTGCTCTCTATGCGACAAAGATTTTGGAAATCTTGACGAATTCATATCTCATTTAAAAAATGATCACGGGAAGGAGATATTCGAGGACGCCAAAAATAATTTAGTCCCCTTCATTTTCGACACACCAGTACTAAAATGCGCTATATGTTCTACAGAGTTTGGTGCTTTCAAAATGTTACAGGAACACATGAATATTCACTTTAGGAATTTTATCTGTGAAATATGTGGCGCCGGCTTCGTAACGGAGAGGCTTAGAAAGTCCCACAGAATGCGCCATGGCACCGGCGAATTCAAATGCGATCAGTGTGACAAAGCATTCGACTGTCCGCGTAAAAAACGCGAGCATCAAAAAAGAACACATCTTGGATTAAATGCGAGGAATAAGTGTACATTTTGTTCAGAGAGATTTGTTGATtattggaaaaaaataacacatatgGTGAAGGAACACGGGGCACCACCTGTTATTTTGGAGTGTTCGGCTTGCGATCGAACTTTTGATAACCAAAGATCATTGTCACGCCACACGAAGAAAGACCACCTTTTGGAACGACAGCACAAATGTAGCGAGTGTgatatgagttttttttttaaaagcagtTTGAAAAAGCACATGGCAAGACACAACGGGTTAAGGCAATTCAAATGCGACATATGTTCAAAAGCGTATGCACGTAAATATACTTTGAAGGAACACTTGAGGATACACAATAACGATAGAAGATTTTCATGCGAGCGTTGTAGTCATACTTTTGTGCAAAAGTGCAGCTGGCGAAGTCACATGCGTTCAAAGCATGGGGAGATAGTATAG
- Protein Sequence
- MTHGSAAENIIETEGNKSSCAIQVTVKPEPYRRNVDLKKHRMNIKEVMLSSNATPIRRCSDLGYMCCHCTEQYRDPAELKQHSLTTHQDLGKSYFFNKLSMDRYFIKLDITSLQCKICDRNIDTIEELLQHLKTEHKKAVYTDIKNHIIPFKFHTETLQCCICIKSFSRFKMLLEHMHTHYRNYICDQVPVTVKIDKDVSTPKTKVIKLKNENTNVNEAIAQKPKLLRWKKSERHLKNIREILKCTNATPIRRYSGVGYTCCYCKEQFPEASNLKRHTIDTHEDLSQADFMKVKFTDYVVKLDITDLTCNLCNESVDTLEQVMEHLRDQHKRTIFVDIPNHILPFKFNDETLKCYMCLNIFNTFKALLEHMHIHYRNYICEICDAGFVNNHGIHNHKTSHKNGSYTCQYCPKVFKSNRDKNSHEKRVHILARYIYKCPYCTEKFYNIKFKYDHMEEVHGTKTATYRCNACDKIFKNSTQFKRHTRRDHLLERPHKCTECDKEFFTKKSLTSHLISHTGSRDFQCDVCLKSYGRKKTLREHMKIHNDERRFKCPGRGTRVIRIERPTKSTVELKFISKRTTGDSSALNVPVLESTKHKNWINLMHILRNSNANPIRCKDSIGYGCSFCAKKFPKPRNLKKHFLAEHNNDKLTRCTFWKMFEYVIKLDITNLNCSLCDKDFGNLDEFISHLKNDHGKEIFEDAKNNLVPFIFDTPVLKCAICSTEFGAFKMLQEHMNIHFRNFICEICGAGFVTERLRKSHRMRHGTGEFKCDQCDKAFDCPRKKREHQKRTHLGLNARNKCTFCSERFVDYWKKITHMVKEHGAPPVILECSACDRTFDNQRSLSRHTKKDHLLERQHKCSECDMSFFFKSSLKKHMARHNGLRQFKCDICSKAYARKYTLKEHLRIHNNDRRFSCERCSHTFVQKCSWRSHMRSKHGEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -