Egri019104.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eilema griseolum
Gene Symbol
RE1
Assembly
GCA_963662185.1
Location
OY759238.1:24867612-24897413[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3e-07 7.4e-05 23.8 0.0 4 40 971 1006 969 1010 0.92

Sequence Information

Coding Sequence
ATGGAAGCGAACATACTCACCAACACCGTGAAGTTATCCGGAGCGAGTAATTGGCCTGTGTGGAGGTTCCAAACTGAAGTTATCTTGAGGAGCCGAGGAGTGGTAGACGTAGTAATGGGCACAAAAGAATATCCAGAAGGAACAACAGAGGCGATTGTGAAGCAACAATTAGAGTGGAAGAGATTGGATTCAAAAGCCCAGGAGATACTGGTGACTAGAATGGAAGAAGAACcattgactcatattttttcatGTCAGTCATCTTATGAAATGTGGGCAAAACTGAAAGTCGTCTACGACAGAGAGTCAACTGTGAGCGTCCACCTATTACAACAGAAGTTTTTCACAATGAGTGTTGACAGTGGAGAACCTTTATCTAAGTTTTTTTCTAAGCTTGAGGACATAAAAACAAAGCTTAAATTAGCAGAAGAGCCAGTGTCTGAAAAAATGATGATTACCAAAGTACTGATGTCACTGCCCGAGCAATATAAACACTTCAGATCAGCATGGGAGTCTGTGCCGCTTGAGAAACAGACTCTAAGTGAGATAACATCCAGACTACTGATTGAAGAGGAGCGTCAAAACTCCAATGAGGAAACTGTGGCATTATTGTCATCAAGAAAGCCCCAAGCGAGTACttcaaatacaattaaatgttacaattgtggaaATATTGGACATTATGCAAGTTCATGTAAGAAAAAAGATACAAGAGAATGTTTTACCTGCAAAAAGAAGGGCCATATTTCCAAACAATGTAGACTAAAAAAGAAGCAAATGAATAGtgaaaataaacagaaaaatgaaaatgaaagtaATGCATTTATGTGTGACAGTGGGGAAAATGAAACTGAGTCTGTGTGGTATTTGGACACCGGCGCAAGTGAACATATGTGTAGCAAAAGAGAACTGTTTCGAGAGTTAAGTGAGAAAGACTTTTTATCCAGAGTAAGGGTAGGCAATGGCAAGATGTTAGAAGTGAAAGGTATAGGAACAGTGATTGTGTATGCATGGGACTCTAAAAAATATAGGTTAACAAAATTATCTAATGTGTTATATGTGCCAGAGCTGAAGTTTAATCTGCTCTCAGTCGGACAAGTGTTAGACAATGGTTTTCATCTTGTTTCTAATAGTGAGCAGTGTCAGTTTGTTGATGAGAATGGTGATATTCGGGCTATCGCTAATAGAGAAAACAAACTTTACAAAATGAACTTtgtgtcaaataaaaatctaatattgGGAGCAGTGGCTGAAAGTGGAACACAAATTTCTGAACGTTCCTTATTTGACGTATCGAGTTGTCAATTGAGTGAAAGGTTAGAAAAAATTTCTGTGTGGCATGAAAGACTATCACATCAGAATTTTGAGCAAATAAAACGAGTtctacgtaaaaataaaattgattttgaagATGACAGTGAGAATTATTGTTGTGAGAAATGTTTGGCCGGGAAACAACATAAATTTCCTTATCCGCAGAGCAAATCAAGAGCAAAAGAAAGATTGGAAATTATTCATGGAGATGTATGCGGTCCAATGGAACAGCTGTCTTTGGGAGGAAATAGATATTTCCTGGTACTGAAAGATGATTTTTCAGGCTACCGTACTGTGTTTTTTATGAAACAGAAGAGTGAAGTTAAAAGTTGCCTAGAAAAGTTCATAGCCCGAGCTGAACGTGAGACttcatgcaaaataaaaatactacgaaCTGACAATGGCACTGAGTTTGTAAATAGTGAGGTTACAAAAATTTTGGAGTCTAAAGgtattattcatcaaaaaagTGTGCCGTATACACCTCAACAAAATGGGCGTGCTGAGAGAGAGATTCGCACGTTAGTGGAGGCTGCTCGTGCAATGATACAAGGTATGCATAAACATTTTTGGGCTGAAGGTGTTAGTAATGCAGTTTACACTTTGAATCGAACTGGTCCAAGTCCCAACAGTGCCACAACTCCATATCAGAGCTATTACAACAAGAAGGATtgcaatttgaatatttttaaagtgttcGGGACAAAAGTTTCCATTCATGTGCCTAAAGAGAAAAGGTTGAAATGGGACCCTAAGAATGTGACTGGTATATTCATGGGATATGATGAGTGCACCAAGGGCTATCGTGTGTACCTACCCAGTTCAAACAGAGTTGAAATACATAGAGACATAATCTTTCTACCAACAAAACGTAGAGAAGAGTTTTGTGAGAGAAGTACAGAAGAGAAAATGATGGAAAGTACAAATATACAAGAGTGTGTGAGCACAGAGGCTGAGAAAAGTGAGgaagacaaaaatattattgaggAGACCAGAGCTGATGAGGAAAGAGAGTTAAGAGTCAGAGAAATAGAGGAAGATGGGAACAGAGTAGCGGAGAGCACAGAAGAAATCGGAGAAGGGAGATACAACTTGAGATCAAGGGATGAGCGAAAACTTCCATCGAAGTTTAATGATTACCATATGAGTCTAATGTGTGAGGAGAATCCTAGCTATGAAGAAGCAGTTGCAAGTGCGGAACATAAATCTTGGGAGGAAGCAATAGCCAGAGAAATTCATGCACTTGAAGAAAACAACACTTGGAGTATAGTAACTAGGCCTTCTTCATGTAAACCTATAGACTGCAAATGGGTACTTAAAAGGAAGACGGATATAACAGGTATGATGTACAAGGCAAGATTAGTAGCCAGAGGCTTTCAACAAAATGTTTTGAGTGATGTGTATAGTCCTGTTGCTAGATTACCTTCTATTaggttgttcttagctatatgtAATGAGGATAAATTACCTGTGTACCAACTAGATGTTTGTAGCGCTTTCTTAAATGGAGATATAAACTCAGATGTGTACATTTGTCTACCTAAAGGTTTGCCTCGGAGTAAAACAGGAGTGaaacgaaataaaatatgtCCAGTTACCCTCTCTGAAGCAATGAAAGATATTAGAAATGGTTGCTCGTACCGTAAGGCTGCTGAAAAATATCACTTACCAAAGTCtacaatttgtaaatattttcaactGAATAAAGACTATGATCTCAATGGTAAGACTGTAGAACTTTTGAAAAATGACGTGAAGCAGATATTTGAGGAGTACGAAGAGGTTCAGTTGtgtgaatacttaaaaaaagctGCCTACCTCCACATGGGTTTAGATTCTAAACAAGTCAGGGACCTTGCCTACCAATTTGCTATtgcaaagaagaaagaaagaattccAGCTAGCTGGCATGAGCACAAAACAGCAGGTATAGGCTGGTTAAGGTGTTTTCGACAGCGCTATACGGAATTGTCACTAAGAAAGCCGGAATCCACCAGTTTGGCGAGAGCAACCAGCTTTAACAGGGCAAATGTTTCCAACTTTTTTGATAACCTTGAAAAAGTTATGAAGAAGCACAATTTTCCCCCTGATTCAGTATATAATGTTGATGTGACCGGAGTATCAACGGTGTATCAGCCTACAAAAGTATTAGCTCCAAAAAAAATTAGGCAGTTGGGAAAATTAACTTCTGGAGAAAGAGGGACAAACAATACTATGATTGCTTGCATAAATGCAGTTGGAAACACTATTCCACCTTTAATAATTTTTCCAAGGGTATATTTCAAAGATCACATGCTGAAAGGTGCTCCGCCAGGTTCAATTGGTGCTGCAAATCAATCAGGATGGAGCACAGAAGCTATTTTCTTACAATATTTGGACCATTTTATAAAACATGCTAAACCTACTAAAGAACGTCCTGTTCTGTTAACGATGGACAACCACGAATCTCACATTTCCATTGAAATCATAGACAAAGCCACTGATAACGGAATAGTTCTTTTGACTTTGCCTCCACATACCTCGAACAAGTTGCAAGCTCTGGACAGATGTGTGTTCGGACCATTTAAGTCGCAGTATTGTAAGGCGGCTGACAGGTGGATGTTGAACCACCCTGGAAAGCCTATTTCCATTTATGACGTAGCAGAAATCATAGGCGAAGCATATTCACTTTCATTTACCCCAAAGAATATAATCAAAAGTTTTGAAGCAACAGGCATATACCCCGTTAATCGGGACATATTTAATGACGAAGATTTCCTGTGTTCATATGTTACTGATCGTCCACAACCGACTGCCGCTGATAATCTAGTTCACCAAACAGATCTAGAACCACTAATTGAGAATCTTGATACCCCTCAGGAAAAAGCTCTCTCCGATATTCCGACTAATCAAAAACAGCCACATGTGGAAGTTCCTGCCGCATCCCTAGAAAATAACCAAATTGAAGCTGAATGTGCTGGGCGTTGTGAGCCAAACGAAAATTTGAAAAATGCTGCTATTCTGCCAACTCCTGAAACCATACGGCCTTTTCATAAGGCGGAAACGAGAAAATTAAATCAACGCGGAAGAAAACAGGGGAAAACAAGAATACTAACTGATACACCGGAGAAAACATCTATTCGTAATGAGgctctaataaaaaaagaaaagaaaagaaaaaatgcaGCTAAAATAGTGAAGAAGAGTGCACCTAAAAAGAAGCCTGAACTCATTGACTTAATTTCTAAACCTGGCCCTAGCACGCGAAAAATATCCCCTAATAAAACCATTTCTGTACTCGAAGAGCAGCATTTATCAATAGTCATTAAACCTATTGATATAGAAAGAAACGTAAAAATTGAAGATAATAATGCGTCTACTGATATTGCACAAAATCCATTCAATATAGAAGCTAGACAGGATAACGAAGAAGTTCGGAGAAGTCATTTACGAAATGGACTGACAGTTCAATCATATGCAATAGAATTGACACCTAATATTGATGAAGGGACCTTCACTGGAGAAGCTATTCTTCAAGTACAACTAACAGCAGATTCAAGAAGTGATGCTGTAAAATTCTATGCACAGGGCTTAGAATTTGAAAGTGTTAGTTATTCACTCGGAGGAGGCACTACTTTTGAGACGACAGCTGAAGAAGTGGATGATGGTATTATAGAAATAGAAATTCACGAGAATCATGCATCTGTTGTTTATACATTCCATTTTGTGTATGAAGGATCTCTTGGAGTACCCGGCAAAGGATTCTACGCTGGACATTATGGTGAAAAGTAA
Protein Sequence
MEANILTNTVKLSGASNWPVWRFQTEVILRSRGVVDVVMGTKEYPEGTTEAIVKQQLEWKRLDSKAQEILVTRMEEEPLTHIFSCQSSYEMWAKLKVVYDRESTVSVHLLQQKFFTMSVDSGEPLSKFFSKLEDIKTKLKLAEEPVSEKMMITKVLMSLPEQYKHFRSAWESVPLEKQTLSEITSRLLIEEERQNSNEETVALLSSRKPQASTSNTIKCYNCGNIGHYASSCKKKDTRECFTCKKKGHISKQCRLKKKQMNSENKQKNENESNAFMCDSGENETESVWYLDTGASEHMCSKRELFRELSEKDFLSRVRVGNGKMLEVKGIGTVIVYAWDSKKYRLTKLSNVLYVPELKFNLLSVGQVLDNGFHLVSNSEQCQFVDENGDIRAIANRENKLYKMNFVSNKNLILGAVAESGTQISERSLFDVSSCQLSERLEKISVWHERLSHQNFEQIKRVLRKNKIDFEDDSENYCCEKCLAGKQHKFPYPQSKSRAKERLEIIHGDVCGPMEQLSLGGNRYFLVLKDDFSGYRTVFFMKQKSEVKSCLEKFIARAERETSCKIKILRTDNGTEFVNSEVTKILESKGIIHQKSVPYTPQQNGRAEREIRTLVEAARAMIQGMHKHFWAEGVSNAVYTLNRTGPSPNSATTPYQSYYNKKDCNLNIFKVFGTKVSIHVPKEKRLKWDPKNVTGIFMGYDECTKGYRVYLPSSNRVEIHRDIIFLPTKRREEFCERSTEEKMMESTNIQECVSTEAEKSEEDKNIIEETRADEERELRVREIEEDGNRVAESTEEIGEGRYNLRSRDERKLPSKFNDYHMSLMCEENPSYEEAVASAEHKSWEEAIAREIHALEENNTWSIVTRPSSCKPIDCKWVLKRKTDITGMMYKARLVARGFQQNVLSDVYSPVARLPSIRLFLAICNEDKLPVYQLDVCSAFLNGDINSDVYICLPKGLPRSKTGVKRNKICPVTLSEAMKDIRNGCSYRKAAEKYHLPKSTICKYFQLNKDYDLNGKTVELLKNDVKQIFEEYEEVQLCEYLKKAAYLHMGLDSKQVRDLAYQFAIAKKKERIPASWHEHKTAGIGWLRCFRQRYTELSLRKPESTSLARATSFNRANVSNFFDNLEKVMKKHNFPPDSVYNVDVTGVSTVYQPTKVLAPKKIRQLGKLTSGERGTNNTMIACINAVGNTIPPLIIFPRVYFKDHMLKGAPPGSIGAANQSGWSTEAIFLQYLDHFIKHAKPTKERPVLLTMDNHESHISIEIIDKATDNGIVLLTLPPHTSNKLQALDRCVFGPFKSQYCKAADRWMLNHPGKPISIYDVAEIIGEAYSLSFTPKNIIKSFEATGIYPVNRDIFNDEDFLCSYVTDRPQPTAADNLVHQTDLEPLIENLDTPQEKALSDIPTNQKQPHVEVPAASLENNQIEAECAGRCEPNENLKNAAILPTPETIRPFHKAETRKLNQRGRKQGKTRILTDTPEKTSIRNEALIKKEKKRKNAAKIVKKSAPKKKPELIDLISKPGPSTRKISPNKTISVLEEQHLSIVIKPIDIERNVKIEDNNASTDIAQNPFNIEARQDNEEVRRSHLRNGLTVQSYAIELTPNIDEGTFTGEAILQVQLTADSRSDAVKFYAQGLEFESVSYSLGGGTTFETTAEEVDDGIIEIEIHENHASVVYTFHFVYEGSLGVPGKGFYAGHYGEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-