Ecan051498.2
Basic Information
- Insect
- Eilema caniola
- Gene Symbol
- SETMAR
- Assembly
- GCA_949126895.1
- Location
- OX421486.1:14985551-14995911[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.3e-06 0.0015 20.6 3.2 1 23 627 649 627 649 0.98 2 13 2.1 3.3e+02 3.8 2.4 2 23 653 674 652 674 0.85 3 13 0.022 3.4 10.0 2.3 3 23 681 702 679 702 0.93 4 13 0.13 21 7.5 0.6 3 23 749 770 748 770 0.94 5 13 7.2 1.1e+03 2.1 1.6 1 11 775 785 775 789 0.90 6 13 3.9 6.1e+02 2.9 2.4 1 19 805 823 805 826 0.78 7 13 0.00011 0.018 17.2 0.8 1 23 834 857 834 857 0.97 8 13 0.53 83 5.6 1.0 1 23 862 885 862 885 0.79 9 13 0.0026 0.4 12.9 0.1 2 23 896 917 895 917 0.96 10 13 9.7 1.5e+03 1.7 0.1 1 19 923 941 923 941 0.86 11 13 0.13 21 7.5 0.1 2 23 951 971 950 971 0.95 12 13 0.00073 0.11 14.6 0.5 2 23 977 998 976 998 0.97 13 13 0.056 8.8 8.7 1.0 2 23 1003 1023 1002 1023 0.96
Sequence Information
- Coding Sequence
- ATGGTCACTGTTTGGTGGTCTAGCGCCGGTGTGATTCATCATAGCTTCTTACCAAACGGGGTGAGCATTACTGCAGATGTGTACTGTGAAGAACTGAACACAATAATGGAGAAGCCGACACATCTCCAACCACCATTGGTCAATCGCTCGTCTCCGCTGCTCCTGCACGACAATGCGCGACCTCATACTGCACAGCAGACGGTCTCCAAGTTGCAAGAGCTGGGGTTGGAAGCTCTGCGTCATCCGCCATACTCACCAGACCTCGCACCTACCGTCTACTACTTTTTCCAGAATTTGGATAACTTCTTGGCGAAAAAGAAATTCAATAGGTACCCGAGAGGAGTTACTCTTCACCGTTTTCCCAAATACGCATTAAATCCTGATCATTATAATACATGGATTAACATTATTGATGAGAATTTGCACGAACTGGATGAACAATATTTGTACAACAATTTGAGAGTATGCCACAAACACTTCAGCGATGTTGATCTGTATCCAAACAATCATCTTAGTAAATTTGCTGTTCCAGAATTACTACTACcagGAAAATCAAGCAAAGAAACAACAAGTTCAGCAGACAACAGTCTCCTTCTACCAGACACTAGTGTGCCAGCATCAGGCACCTGTCTAGCACCATCAGACACCAGTCTATCATCATCTGACACCCATCCACCAACATCAGACACCAGTCTACCGCGATCTGACACCCATCCACCGCCAACAGACACCAGTTTACCACCATCGGACCCCAATCCACCGCTATCAGACACCAGTCTATCACCATCAGAAACCTGCCTACCACCATCAGACACAGAACATGCTATTGAAAATGATGACCCACAAGATTTTGATTCTTCAGAGCATAACTACACTAAAAAACCCACTCTATTAGACCCACCTCAACTACCTAAACCATATAATCAGAATAAACCTGTTAAAAAACCTAGTATCGTTGTGCTAAGTAATACAGTAATCAGTAAGACAGTTACTGATGAATCTGCAGCTTCTCTCAGTGCTCCAACCAGTCCAAGCCCTGAGCTGCCAGTGGAAAGCAGCGATAGAACACTTGGTGGATTTAAACTAGGAGTTTCAGAACAAGTACTGCAATTCCAGTTGGTAGACGATGGTGACTGCGATGAGCCAATATACAAAGTTCTCGCGGAGAAACAACCAGAGACGAGAGTTAAGACAACCGCATGCAATACTGAGTGTAACACAGTGCTGCAAGAAGAGCCCTCAACAACGGCAGAAGACGATGTTAAGGATAAACCAGAACCCCAagaaaatgttacaaaatatgAAAGGCACAAAGATAAGGAGTACTGGAAGATGAAACTGACGCATATTCTGCACGAAACGAAGTTCTGTGGCATCTGTCTGAATGCTGAGGACGGCATGAACGCGCTCAGTGATGAATTAGAAATAGTTAACTGTGAAATAAATTACAGGAAAACATTGCGGCAAATTGTGGACTATGTGTTTAAGAAGactgACTATCCGCTAGCTAATTCACAAGTTTGCAAGGGTTGTACAAATAAACTAATTCAGTCGTATATGTTCATACGAAGCACCGAGGAGACGGCGAAAGTGCTGAATTTTCACTTGAACGAGTTATATAACAAGACGTGTTACATACGTAATAATGATTTGAAGCATAAACAAGCTGGGTCTGAGATCTATAACGTTGTTATTGCATTAGACAAAGAAATACCGATAGGCTTTGACTGTGACATTACACCAGAAGAGCGCAGGACGGCTGAAAGTGAGCCAAATCATCCCAGAGCCAAACGAAAACTGAAGTGTGTGAGTTGTAATGTGATACTACCCTCACAGAGAGCGTGGAGGgtacatgaaacaacaacacaCGGGAACAATCACAGGTGTCCAATATGTCTGCAGAGCTTCAGAACGCGAGAAAACTTCACTGCCCACTATAGAACGCACTCGTACACACGATGTACGATTTGTCACAGGACAGTTCGAGACGGCAGACTGCTGCAGCACCTGAAGCGACGTCACACACGTTCCGTACACCTGTGCTCGACGTGCGACATCGCCTTCTATAGCGCCGCAACTCTGGCTCGGCACAACAGACAGTGCCACGGTGGCGCCGCCCCCCGGTGCCCGCCGGCGCACCGCTGCCGGCTGGCGTGCCCGGCGTGCGGCCCGGCGCCCTGCCCGCACGGCGCCGCGCTGCGCTGGTACCGGCGGCAGGCGCTCAATTTCGAGCCGCGCGCCGCGTGCGGCCGCTGCCGCTACGTGTGCTCCAGCCGGGAGGCGCTCGTCGCGCATTACAACGAGcggcacctggccggtcggcaCCGCTGTGGCGGCTGCGGGCAGCAGTTCCGTTGTAGATCGGATTCGGCGGGCCACGTTTGTGAATCTAGGCACGCGAGAAAAGGCGTCCACGTTTGTGAGTTTTGTGACAGGCAGTTCAGCAAGGAGGTAGTGTGCCAGCGACATAGAAAGGAGTGTGGACGCATCCAGCGGCAGTACCAGTGCGATTATTGTCCAGCGAATTTTGATTCGTCGAGGAATCTCACGGAGCACAGAGAGCGCAAGCATGGCAAACATACGTTTTCGTGTAATATGTGCGACAGGGTATTTTTAAACGACACGAAGAAAAGAAAGCATTGGCAGCAAGTTCACAGCAGACGCGAGGAAAGAACTTCAAGCTCAGAGTGCGTCATGTGTCAAATAAGGTTTCCAACTAAAGCAGCTCTGCTTCTGCATCTGAGATATCATGAACCTGGCACGAAGTTCCCCTGCGGTGTCTGTAGGGCTCGGTTCGACACTGTAGCACAATTCGGCACTCACGATTGTAAACGTACTCGTGCACTGTCGATGTGTGAGATGTGTGGTCTGGTGGTGAGGCAGGTTGTACTGAGGGAGCACATGCGAGCGCACGCGGGCGGCGCGGTGACGTGCGCCACGTGCGGCAAGCCCTTCCAGAATGTGACGTCACTGCGATATCACCAGCAGCGCCATCCGAGGAACGTATCGTGTCGGAAATGTAACAAGTCGATTAGTTCCGTGAAGCTGTGGAGGCACCTTAGGAACCACCTTATTAGAGAATCGTATCAACAGAAGCTCATGTTTTAA
- Protein Sequence
- MVTVWWSSAGVIHHSFLPNGVSITADVYCEELNTIMEKPTHLQPPLVNRSSPLLLHDNARPHTAQQTVSKLQELGLEALRHPPYSPDLAPTVYYFFQNLDNFLAKKKFNRYPRGVTLHRFPKYALNPDHYNTWINIIDENLHELDEQYLYNNLRVCHKHFSDVDLYPNNHLSKFAVPELLLPGKSSKETTSSADNSLLLPDTSVPASGTCLAPSDTSLSSSDTHPPTSDTSLPRSDTHPPPTDTSLPPSDPNPPLSDTSLSPSETCLPPSDTEHAIENDDPQDFDSSEHNYTKKPTLLDPPQLPKPYNQNKPVKKPSIVVLSNTVISKTVTDESAASLSAPTSPSPELPVESSDRTLGGFKLGVSEQVLQFQLVDDGDCDEPIYKVLAEKQPETRVKTTACNTECNTVLQEEPSTTAEDDVKDKPEPQENVTKYERHKDKEYWKMKLTHILHETKFCGICLNAEDGMNALSDELEIVNCEINYRKTLRQIVDYVFKKTDYPLANSQVCKGCTNKLIQSYMFIRSTEETAKVLNFHLNELYNKTCYIRNNDLKHKQAGSEIYNVVIALDKEIPIGFDCDITPEERRTAESEPNHPRAKRKLKCVSCNVILPSQRAWRVHETTTHGNNHRCPICLQSFRTRENFTAHYRTHSYTRCTICHRTVRDGRLLQHLKRRHTRSVHLCSTCDIAFYSAATLARHNRQCHGGAAPRCPPAHRCRLACPACGPAPCPHGAALRWYRRQALNFEPRAACGRCRYVCSSREALVAHYNERHLAGRHRCGGCGQQFRCRSDSAGHVCESRHARKGVHVCEFCDRQFSKEVVCQRHRKECGRIQRQYQCDYCPANFDSSRNLTEHRERKHGKHTFSCNMCDRVFLNDTKKRKHWQQVHSRREERTSSSECVMCQIRFPTKAALLLHLRYHEPGTKFPCGVCRARFDTVAQFGTHDCKRTRALSMCEMCGLVVRQVVLREHMRAHAGGAVTCATCGKPFQNVTSLRYHQQRHPRNVSCRKCNKSISSVKLWRHLRNHLIRESYQQKLMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -