Ecan050255.1
Basic Information
- Insect
- Eilema caniola
- Gene Symbol
- -
- Assembly
- GCA_949126895.1
- Location
- OX421485.1:17415157-17417791[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.31 49 6.4 1.6 1 23 111 134 111 134 0.91 2 10 0.065 10 8.5 0.1 2 23 160 182 159 182 0.96 3 10 0.043 6.8 9.1 2.7 2 23 205 226 204 226 0.96 4 10 5.7e-06 0.0009 21.3 1.1 1 23 230 252 230 252 0.98 5 10 0.0036 0.57 12.5 2.4 1 23 257 280 257 280 0.98 6 10 0.078 12 8.3 1.9 1 17 287 303 287 310 0.72 7 10 3.2e-05 0.005 18.9 1.0 2 23 318 340 317 340 0.97 8 10 0.0024 0.38 13.0 4.6 1 23 346 368 346 368 0.98 9 10 1.5e-05 0.0023 20.0 1.7 1 23 374 396 374 396 0.98 10 10 4.9e-05 0.0077 18.3 5.4 1 23 402 425 402 425 0.98
Sequence Information
- Coding Sequence
- ATGGCCCCCTCGCTAAAGCTAAACACACTGAGACCTAATTTCACCATACTCTgTCGTTCAGCAGTGCCTTTGAAAGGTTTGGTTGAAGTTAATCCAGAAGTAAGTAGTTTACATAGCTCGAAAACCAACAAAGtaacaaacttaaaaaaatcagaAAACAAGAAAATTACAACAAAAAGCAATTTGAAAACGGAGAAAACGACTTCAACACCAAAACAAGTCCCGCTAGTGCCGCTTGATAGACAGGAAATACATAAACATAGGTTTAATATAACAGAAGTGTTGCTTTGTTCGAACGCTACGCCAATAAGACGCTACGAAGATATGGGATACCAGTGTTGTTATTGTAAAGATCAGTACGTATTGCCTGCAGATTTAAAGAGACATAGTTTAGAAACCCATCAAGATGTAGGAAAGGCATTTTTCATGAAATTAGGAATGGAAGCGTTAGTCGTGAGGTTAGACATTACAGGATTACAGTGCAAGCTTTGCAACCAGAATCTCGATACCATCGAACTACTGTTGGAGCATTTAAAAGTGGTTCATGACAAAAAAATTCACACTGATATAAAAAACCGCATGACTCCGTTTAAATTTGTTACGGAAACGCTGCAATGTTGCATCTGTAGCAGTAATTTTAGTAAATTCAAAATGCTACTTGTACATATGAACTTACATTATAGAAACTACATTTGCAAACTGTGTGACGTAGGTTTCACTACTCTCAGTAGTCTTAGAAACCATATGCATGTACACGAAATCGGCACGTTCAAATGTGATTACTGTTCACAAGTTTTTGAAACaagtcttaaaaaacaaaacCATGAAAGAACAACGCATGTACCTAAGTTTGATCTATACAAATGCAGGATTTGCAATGAAACCTTCCACCTCTACCATTTGAAAGAGGCACATTTAGTGTCAATGCACGGATTGCAGTTACCCACATCTAAATGTAAAGCTTGTAATAAAGTCTTCAACAGTAGACAAGCTTTAAAGGTTCATATCAAAAGAGACCACTTGATGGAGAGAAGACATCAGTGCTCAGAGTGTGAAATGAGCTTCTTCAAAGGAAGGGACCTCCAACATCATATGCTCAAGCATACGAAAGCACGAACTCATAAATGCACTGTTTGTTCAAAAGCTTATGGCAGAGCATATACACTGAAAGAGCACATGAAAATTCATGACAACGTTAGACGATTTAAATGCGAACACTGTGGGCAGGCATTTGTGCAAAAATGTAGCTGGAAGAGTCACATGAAATCAAAACATAATGAAATTGTGAATTGA
- Protein Sequence
- MAPSLKLNTLRPNFTILCRSAVPLKGLVEVNPEVSSLHSSKTNKVTNLKKSENKKITTKSNLKTEKTTSTPKQVPLVPLDRQEIHKHRFNITEVLLCSNATPIRRYEDMGYQCCYCKDQYVLPADLKRHSLETHQDVGKAFFMKLGMEALVVRLDITGLQCKLCNQNLDTIELLLEHLKVVHDKKIHTDIKNRMTPFKFVTETLQCCICSSNFSKFKMLLVHMNLHYRNYICKLCDVGFTTLSSLRNHMHVHEIGTFKCDYCSQVFETSLKKQNHERTTHVPKFDLYKCRICNETFHLYHLKEAHLVSMHGLQLPTSKCKACNKVFNSRQALKVHIKRDHLMERRHQCSECEMSFFKGRDLQHHMLKHTKARTHKCTVCSKAYGRAYTLKEHMKIHDNVRRFKCEHCGQAFVQKCSWKSHMKSKHNEIVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -