Ecan052129.1
Basic Information
- Insect
- Eilema caniola
- Gene Symbol
- Bcl11b
- Assembly
- GCA_949126895.1
- Location
- OX421487.1:6936510-6944489[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.082 13 8.2 2.2 1 23 271 293 271 294 0.95 2 11 0.13 20 7.6 0.0 1 23 302 325 302 325 0.89 3 11 0.9 1.4e+02 4.9 1.4 1 23 329 352 329 352 0.94 4 11 0.048 7.5 8.9 5.4 1 23 356 379 356 379 0.98 5 11 0.00029 0.045 15.9 0.1 3 23 384 405 382 405 0.95 6 11 0.0019 0.3 13.3 0.9 2 23 409 431 408 431 0.95 7 11 0.02 3.2 10.1 1.6 2 21 446 465 445 470 0.93 8 11 1.6e-06 0.00025 23.0 0.7 2 23 479 501 478 501 0.95 9 11 0.0009 0.14 14.4 1.2 1 23 507 530 507 530 0.95 10 11 0.0011 0.17 14.1 0.2 3 23 541 561 540 561 0.98 11 11 0.0001 0.016 17.3 0.6 1 23 567 590 567 590 0.98
Sequence Information
- Coding Sequence
- atggatataaaaataaaatgtgagcAGATAAATATACTGTGCCACGGATGTCTTACTGAAGACCGAACAGTCCACCGCATTAGCGGAGAAATCAGTGAAATGTTCTATGGACTTAGAAATGATAAACGCAATACAAAAAGTcTGGAACTTGCACTCTGTTGGGAGTGCGTGGCGTTTCTAAAGAAACTGAAGGTGTTTAAAGCAAGGATCAAAACAGCGCAATGCTTGCTGATGCagtatataaaatgttattgtaaAAATGTAAGGCTTACCgaccCTGTTCCAAGGCTCAGTAGCTTAtcatcattatataaattacATAGCAACAGATTTGATTATGAGTTTGAAGAAGAAGAGAAACCTGTATTTGAAGAAGTACAAGATCAAGATGAGGAGAATAATGCACCAATtgaatatgaaatgaaaattgtaaattttcCAGCAGAAGATTTACTAACAGATATAAAAGTAGAATATGATGATTGTATAAAAGcggaaaataatgataatattaaaGAAGAAAATAATGATAGTATTAAAGAAGAAAACAACAGCAGTAACGATAACAATTCGGATTACGAACCTGTACCTCAATTTGAGGTTAAAAAGTCTGAAGAAAAATCTAAATCTAAAAAacctaaaaaatattataaatgtaagaaGTACCATATGTTTGCGACAGTGACTAAAAGAAAGGATGTGACAAAGAATACTTATCTGCAGTTTGCCGAACCTGTATCGTTAGATCAGAAAGAGTATGAGAAAGTGTTGAGACGAGATAGAATTCGTTATTCGTACCCTAGGATGCCATTCAAGTGTGAGGTGTGTAGAGAAGGGTATTTTAAAAAATTGGACTTACAGTGGCATAAGAGTCTTCATCATAGTAATGAgTCAACTTTCCCATACAAATGCGCAGATTGTCCCACgatggtgacgtcactggaacAGCAAGAGCAGCACTGGGCAGCGGCCCACTCTAAACAGTACAAGTGCACGATATGTACTGAGGTGCACCAGTCGGtcgttgaaattaaaaaacatataaaaaagagCCATCGCAAGAATTACACCTGCAACAAGTGTGGCTTCCACTGTGGGGGTCCATATGAGTTTCGGACGCATTACAAGATGACACATGAGAGAGTTATTTGCGATTACTGCAACGTGAAATTCATGCAAAAAAGTGCTTTGATATCTCATATACAGCTCTCCCATACCCGAGTATACTGCGGCATATGTAACCGCACATACGTCAACAGCCAAAAATTGAAGTACCACAATCAGACTACACACCCTGAGCTGAACGCCGGCACCGAGGTACGTAAGGAGCTGTCGTACTGCGTGGAGTGTGACAGGCAGTTCCCGACCGAGCACAAGTACAAGCAACATTTGAAACAGTCTGTAAGGCACACCAAGCCAAAGAAAATCAGAGTGCCGTGTCCCGACTGCGGCAAGGTCTTCACCAAAAACAGCTATATGAACAACCACCATAGATTAGTGCACTTGAAGGTTACCGAGCACTATTGCGACCAATGTGATAAGTACTACGCGAACGGCTACGGACTTCGCAAGCATATAAAGCTCGTTCATAAAAAGATCGCAGAACCCAAGGACAAAATATGTGACCTCTGCGGACGAGGGTTTGCAacaaataatatattaataaaccaCCGCCGCACACACACCGGCGAGCGGCCTTTCAAGTGTAAGTTCTGTCCTGCGGCCTTCGCGCAGAAGTACGCCATGGCCACTCACCAGAGATCGCAGCACAAGAACATGGCCCAGTCTAGTTAA
- Protein Sequence
- MDIKIKCEQINILCHGCLTEDRTVHRISGEISEMFYGLRNDKRNTKSLELALCWECVAFLKKLKVFKARIKTAQCLLMQYIKCYCKNVRLTDPVPRLSSLSSLYKLHSNRFDYEFEEEEKPVFEEVQDQDEENNAPIEYEMKIVNFPAEDLLTDIKVEYDDCIKAENNDNIKEENNDSIKEENNSSNDNNSDYEPVPQFEVKKSEEKSKSKKPKKYYKCKKYHMFATVTKRKDVTKNTYLQFAEPVSLDQKEYEKVLRRDRIRYSYPRMPFKCEVCREGYFKKLDLQWHKSLHHSNESTFPYKCADCPTMVTSLEQQEQHWAAAHSKQYKCTICTEVHQSVVEIKKHIKKSHRKNYTCNKCGFHCGGPYEFRTHYKMTHERVICDYCNVKFMQKSALISHIQLSHTRVYCGICNRTYVNSQKLKYHNQTTHPELNAGTEVRKELSYCVECDRQFPTEHKYKQHLKQSVRHTKPKKIRVPCPDCGKVFTKNSYMNNHHRLVHLKVTEHYCDQCDKYYANGYGLRKHIKLVHKKIAEPKDKICDLCGRGFATNNILINHRRTHTGERPFKCKFCPAAFAQKYAMATHQRSQHKNMAQSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -