Ecan052752.1
Basic Information
- Insect
- Eilema caniola
- Gene Symbol
- -
- Assembly
- GCA_949126895.1
- Location
- OX421487.1:13149290-13165431[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00043 0.068 15.4 1.9 1 23 247 269 247 269 0.99 2 11 3.5 5.6e+02 3.0 1.3 1 23 276 299 276 299 0.88 3 11 0.014 2.2 10.6 1.5 1 23 330 353 330 353 0.93 4 11 0.00036 0.056 15.6 0.7 1 23 357 380 357 380 0.97 5 11 0.0042 0.65 12.3 0.3 2 20 395 413 394 415 0.92 6 11 0.0015 0.23 13.7 1.3 3 23 428 448 426 448 0.97 7 11 0.00059 0.093 14.9 1.7 2 23 455 477 454 477 0.96 8 11 4.2e-05 0.0066 18.6 0.5 2 23 496 517 495 517 0.97 9 11 6.7e-06 0.001 21.1 0.6 1 23 523 545 523 545 0.99 10 11 4.7e-05 0.0074 18.4 1.4 1 23 551 573 551 573 0.94 11 11 1.6e-06 0.00024 23.0 2.7 1 23 579 602 579 602 0.98
Sequence Information
- Coding Sequence
- ATGGATAATTTACTAGCTTGCAGAGTATGTTTCATTACAGACGTGAAGTTGTACAATATGTTCAATAACAGTCTAATAAAGGCTTACGAAAGTCTAACGGGAAATAACATGTCGATACCGGACTTGTTACCCTATTACCTGTGCAGTTACTGCCAACACCTTCTAGTGAAGAGTAGCAGGTTCAGAGACAGGTGTATTCAATCCCAGGAGCTCTTAAAATGTGCCAGCATGGAATTGCCAGAGtTAACACTCGGACATATCCAATCTCTACCCCAATCTCCTGCTCACTCACTCTCTATTTCGCCAATCGAAACATCCATCACATTACTTCCTTTACCTGAAACAGTAATAAAAGAAGAAGCATttgatattgttttaaaagaaGAATTAACAGAAGAAAGTGACGAGGAACCTCTAgcgaaaaaagtaaaaaaaagaaataagaatGAATTAGAATGTTCCGAATTTGAATTCGGAGAAGACAGCCTCGAACCGTTGACAAAGAACATAGAGTTTTCCGAATTTGAAACTGTCGATTTCGAAAAAGAAAAACGCGGTTCTTTTTccgattttgaatttgaaactgACACTTTTGAAACAGTAGCTTTTGGGACGACTGTCGCTGAGCCTGATGATTATATAGATAAGGAAGACATTgaagttatatttttaagtaaagaGGAACAAATAGAGGAAGTGTTGGCCAGAAAGAGTTCATTGAATTATCAAAACTCTTTTTACAAGTGCGAGCTATGTTATAAAGGTTTCATGACGGATTCAACTTATAAAAATCATATGATTAGACATGATCCGAGTACAGGCCCCCACACCTGTGACGTGTGCCACACAAGATGGCCAGACAGTCGCTCCGTCAAAGCCCACAGCACCAGCGCCCACGAACGGAAATACATCTGCAAATTATGCTCGCACACGTCCAAGTCCTGCCATAGGGCTAAGGAACATTTGAAATGGCACAAAGGGCACACGTTTACCTGCAAGATCTGTGGCGCGTCGTTCGCCAAGTCCACGAGCCATCTGACGCACGTGCGCCTGCAGCACCCCTCGCAGTACTGCTGCGACGTGTGCGGGGAGAGCTTCATCGGCCAGAATGGGCTCAACATGCACAAGAAGAAGGCGCACAGGGGCACCCGCGAGCCCGCCCAGGATTCGAAGGTGGATCTGTCGTGTGGCGTTTGTGTCACCCACTTTAAGACTCCAGAAGCCCTCAAGAGACACACCAGTTCTACGGAAGTCGGGGTCTGTGACGGTACCCTTAGTGCGTGCGTCCACTGTGGAGACAACTTTTCCAGTCGAGAACTGCTCAAGGAGCACCAGAAATCTCACCAGAAGGACGATACCGTCAAATGTGAtgagTGTAACCGAACGTTCGCACACGAGCGTTCGTTCAGCGTGCACTACCAGCGCGTCCACCTGGGAATCAAACTGACGTACAAGCGGAACCAAACCGGCCACCGCGGGTCTGTCGTGTGTGAAATGTGCGGGAAGAAGTGTATTTCCCCGGCTACATTGGTTTACCATCAGAGGACACACACCGGCGAGAAGCCCTTCGAGTGTCCGCAGTGCCCCAAGAAGTTCAGCGTTTACCAGCGGCTACAGATCCACATCCGCACCCACACAGGGGAGAGACCCTTCAAATGTGTCCAATGCCCCAAGGCCTTCAAACACAAAGCGGCCCTGAACAGGCATGACAGGGTACACACCGGGGCGAAGCCCTACCAGTGTTCCCACTGCCCAAAGTCTTTCTCGCAGTCCAATTCTATGAAGCTTCATGTAAGGACCGTTCATCTAAAGATGCCAGCCCCCTATCGCAACAGGCGTAATAATAAACACGAATGA
- Protein Sequence
- MDNLLACRVCFITDVKLYNMFNNSLIKAYESLTGNNMSIPDLLPYYLCSYCQHLLVKSSRFRDRCIQSQELLKCASMELPELTLGHIQSLPQSPAHSLSISPIETSITLLPLPETVIKEEAFDIVLKEELTEESDEEPLAKKVKKRNKNELECSEFEFGEDSLEPLTKNIEFSEFETVDFEKEKRGSFSDFEFETDTFETVAFGTTVAEPDDYIDKEDIEVIFLSKEEQIEEVLARKSSLNYQNSFYKCELCYKGFMTDSTYKNHMIRHDPSTGPHTCDVCHTRWPDSRSVKAHSTSAHERKYICKLCSHTSKSCHRAKEHLKWHKGHTFTCKICGASFAKSTSHLTHVRLQHPSQYCCDVCGESFIGQNGLNMHKKKAHRGTREPAQDSKVDLSCGVCVTHFKTPEALKRHTSSTEVGVCDGTLSACVHCGDNFSSRELLKEHQKSHQKDDTVKCDECNRTFAHERSFSVHYQRVHLGIKLTYKRNQTGHRGSVVCEMCGKKCISPATLVYHQRTHTGEKPFECPQCPKKFSVYQRLQIHIRTHTGERPFKCVQCPKAFKHKAALNRHDRVHTGAKPYQCSHCPKSFSQSNSMKLHVRTVHLKMPAPYRNRRNNKHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00638031;
- 90% Identity
- -
- 80% Identity
- -