Ecan050146.1
Basic Information
- Insect
- Eilema caniola
- Gene Symbol
- -
- Assembly
- GCA_949126895.1
- Location
- OX421485.1:16434710-16438881[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 2.5 3.9e+02 3.5 0.5 3 22 32 51 31 53 0.88 2 26 2.2 3.5e+02 3.7 0.5 2 23 80 102 79 102 0.89 3 26 1.4 2.2e+02 4.3 6.1 3 23 130 150 128 150 0.96 4 26 0.00063 0.099 14.8 1.7 1 21 154 174 154 177 0.95 5 26 0.18 28 7.1 0.1 1 21 181 201 181 202 0.93 6 26 3.8 6e+02 2.9 0.4 3 21 211 229 209 232 0.89 7 26 0.00026 0.041 16.0 1.7 1 23 239 262 239 262 0.97 8 26 0.66 1e+02 5.3 0.7 1 23 267 289 267 289 0.94 9 26 8e-05 0.013 17.7 0.5 1 20 295 314 295 317 0.94 10 26 6.2 9.8e+02 2.3 1.0 1 14 323 336 323 339 0.89 11 26 2.7 4.3e+02 3.4 0.5 2 20 360 378 359 379 0.90 12 26 0.098 15 7.9 0.6 2 23 408 430 407 430 0.94 13 26 0.15 23 7.4 1.2 5 23 460 478 457 478 0.93 14 26 0.0042 0.67 12.2 4.3 2 21 483 502 482 505 0.93 15 26 1.9 2.9e+02 3.9 0.3 1 21 509 529 509 529 0.95 16 26 7.5e-05 0.012 17.8 1.3 3 23 557 578 556 578 0.98 17 26 0.15 23 7.4 0.3 3 23 650 670 648 670 0.92 18 26 0.00056 0.087 15.0 1.4 1 21 674 694 674 695 0.96 19 26 0.52 82 5.7 0.1 1 23 736 759 736 759 0.96 20 26 0.26 40 6.6 0.3 2 23 785 807 784 807 0.96 21 26 0.0024 0.38 13.0 0.6 2 23 831 852 830 852 0.95 22 26 0.00035 0.055 15.6 0.0 1 23 856 879 856 879 0.97 23 26 0.066 10 8.5 0.6 1 23 883 906 883 906 0.97 24 26 7.9 1.2e+03 1.9 0.5 1 23 911 936 911 936 0.89 25 26 0.00024 0.038 16.2 2.1 1 23 945 968 945 968 0.97 26 26 0.00079 0.12 14.5 0.8 1 23 978 1001 978 1001 0.96
Sequence Information
- Coding Sequence
- ATGGAACCACATTTAACGGCGAAACGGAACGCGGAGATTGTATTACAATACTCAACAGTATATCCGTTCAGGTTGCGAGGAAAAGCTATGCTATGTGTCTACTGCTGTGAGGAATATGACGATCCCTCCGACTTTCGGAGACACGTTGATGATAATCATGAACAATTCACTGTATCAACAGCGTTTGCCCACATTGGCAGCGCGAAAGATTACCTCAAAGTTGATTGTACTAACCTAAAGTGCAGATTATGTTTCGAACATTTCTCCAGAATCGAAGAAGTCGCTGGTCACCTTGTAAAAGAACACAACGGCAAGGAAACTAGCAAACTGTGCCTTGATTTTGATATAGGCCTGCAACCGTACAGATTAGAGAAGGATAAATGGTTCTGTTTCCACTGCAATAAGAAACTTCCTACTGTGACTAAACTCTGTCGTCATACTACATCGCATTATCAGCAATACACATGTGATATTTGTGGACGGAGCTATATGACCAATGACGCGTTAAAGTACCATGTTAAATGTAGTCATTCAGGAAACTACGTTTGCCGAAAATGTTGGAAAGACTTCCCAACGATAGAAGAAAAAAGAGAACATGTTAGAGTATCCAAAAGCTGTTGGGCATTTGGATGTGTTAATTGCGGGGATAGATTTCAATCTTGGGAGCAGAAACAGAAGCACTTAGTTGATAAACATGACTGTCCGGAGACTAGTTATCCCTGTCCTGATTGTGACAGGACATTTCAAACTAGAAAACGATTTTATAACCATTACAAAATGGCACATACTGACGAAGGATATATTTGTTCTTGCTGTGGTTTGAAGTTTGGGGCCAAAAATCAACTAGAAGATCATAGGCTAGGACATACTGGAGAGAAGCAATTTAAGTGCTTAGTGTGTTCGAAAGCCTTTACACGTAATAAGAGTTTGGCCCAGCACATGTGGATTCATAGTGAAGTTAAACGTTTTGAATGCAAACCTTGTAATAAACAATTCAACCAAAAAGCGAAACGGAACGCGGCGATAGTGTTGCAATACTCAACAGTGTATCCGTTCAGATTCCGAGAGAAGGCCTTCCTATGTGTCTACTGCTGCGAGGGCTACGAAGATCCCGTCCATTTAAGGAGACATGTCGATTGTAATCATAAAAAGTTCACTGTCTCTACGGCATTCGCCCACGTCAGCGGAAAAGACTATCTAAAAGTTGACTGTACCAACCTAAAGTGCAGACTATGTTCTAAACCTTTCCACAATATAGAAGAAGTCGCTAAACATCTCAAAGCAGAACATGATTGTAAAGAAACCCGGGAGCTTTGCCTTGACTCCGATATAGGATTACAAACTTACAAGTTGGTGAAAGATAAATGGATTTGCATCCTGTGCGATACGAAGTTTGCAACTATAACTAGACTTTGTCGCCATATGGCGTCGCATTATCAACAGTGTACATGTACTGTTTGCGGTAGAGGTTACGTAACACAGGAGGCTTTAAAGCATCATATAAAATGCAATCATTCTGGGACTTTTGTGTGCCGTAAATGCTTGACGGATTTCCCTACTGCCAAAGCGAAAAAGGAACATTTACGACCGCCGCAGCGGCGAAACGCTGAACTAATACTAACTTATTCTACCGCGTACCCTTTCAAAACTAGATTTAGTCAAATACTTTGCTCGTATTGCCACGAAGAGTTTAATACCCTCTCTGACTTGAGATATCATATGAAAGTAGAACATATTAACTCcgattataaaaatgtattttacagGGCTAAAGATAATCTTATCAAAATCGATATAACCGATTTAAGATGTAAAATTTGCGCTGAGGAAATCCAGGATGTCGATGGCCTTATGAGCCATTTATATAGCGTACATAATAAACCAGTCAGATTCAATGCTCGATATGGCGTTCTGCCTTACAAACAAAATTCGGAAAATCAATGGATTTGcatatattgtaataaaatattcaatgcatttatttcttttaagcGACATATTGTTACACATTTCATGAATTATACATGCGACAAATGTGGAACGACGTTTGTGTCTGATCACGCCTTAAGAGATCACCATCGCCAGGTTAAATGCTTTAGAATGGCTTATAAAGCGCGAAACGGGAGGGTCTTGAAGCCCAGAACAAACGCTGAAATCATTCTCCAATGCTCTACAGCTTCCCCTTTTAGAACTTGGAAGAGTAATTTCAATTGTGTGTTTTGTAGGGTACAGAGCAATGATCCTAGTGGTTTGAGGCTACATGTAATTACAGCACACGCAAATTATGACGTCAAAGCGGCATTTTACAAGAAGCTAGGCAAAGATTTTCTAAATATCGATATAACTGATCTCCAATGTAAACTTTGTTTTATGACAATAGCAACTTTTGAAAGTCTAATTTACCATCTAAAGAGCGCCCACCAGCAGCCAATAAATGATGACGCGCAATTAGGAGTCCTACCTTTTCGATTGAACAATGGATCACTATGGAAGTGTACTATATGTCCAAATGAATTCAAAGATTTCGTGTCTCTTAAAAAGCATACTTCGGAACATTTCCAGAATTACGTTTGCGACACTTGCGGAGAAGGTTTCATTACAGAATCTGCAATGATAGCTCATACGAAAATACCGCACGAAAACAAATATAACTGCAGCCGTTGTGTAGCTACATTTTCTTCACTGGATGATAGAAATTTGCATGTAAAGACGCAACACACGTCGATGCCTTACATGTGTATGTACTGTAAGGACAAACCGCGCTTTGCGAACTGGGAAGTTCGGAAAAAACATTTAATGACAGTACATAATTACAAAACAGGAGCTGATAAGTATGAATGTACGACTTGTCAGAAGACTTTTAAGACGAGATCTGGGAAATACAATCATATGGCGAGAGTCCACAGAATTAAGAAAGATTCGGAGTTAAGTTATCCTTGTCAAAGGTGCCCGAAAGCCTTTACTACCAAACTGTTCTTGGACAAGCATATTGCTAAAAAGCATTTTGATGTATAA
- Protein Sequence
- MEPHLTAKRNAEIVLQYSTVYPFRLRGKAMLCVYCCEEYDDPSDFRRHVDDNHEQFTVSTAFAHIGSAKDYLKVDCTNLKCRLCFEHFSRIEEVAGHLVKEHNGKETSKLCLDFDIGLQPYRLEKDKWFCFHCNKKLPTVTKLCRHTTSHYQQYTCDICGRSYMTNDALKYHVKCSHSGNYVCRKCWKDFPTIEEKREHVRVSKSCWAFGCVNCGDRFQSWEQKQKHLVDKHDCPETSYPCPDCDRTFQTRKRFYNHYKMAHTDEGYICSCCGLKFGAKNQLEDHRLGHTGEKQFKCLVCSKAFTRNKSLAQHMWIHSEVKRFECKPCNKQFNQKAKRNAAIVLQYSTVYPFRFREKAFLCVYCCEGYEDPVHLRRHVDCNHKKFTVSTAFAHVSGKDYLKVDCTNLKCRLCSKPFHNIEEVAKHLKAEHDCKETRELCLDSDIGLQTYKLVKDKWICILCDTKFATITRLCRHMASHYQQCTCTVCGRGYVTQEALKHHIKCNHSGTFVCRKCLTDFPTAKAKKEHLRPPQRRNAELILTYSTAYPFKTRFSQILCSYCHEEFNTLSDLRYHMKVEHINSDYKNVFYRAKDNLIKIDITDLRCKICAEEIQDVDGLMSHLYSVHNKPVRFNARYGVLPYKQNSENQWICIYCNKIFNAFISFKRHIVTHFMNYTCDKCGTTFVSDHALRDHHRQVKCFRMAYKARNGRVLKPRTNAEIILQCSTASPFRTWKSNFNCVFCRVQSNDPSGLRLHVITAHANYDVKAAFYKKLGKDFLNIDITDLQCKLCFMTIATFESLIYHLKSAHQQPINDDAQLGVLPFRLNNGSLWKCTICPNEFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCVATFSSLDDRNLHVKTQHTSMPYMCMYCKDKPRFANWEVRKKHLMTVHNYKTGADKYECTTCQKTFKTRSGKYNHMARVHRIKKDSELSYPCQRCPKAFTTKLFLDKHIAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -