Ecan044091.1
Basic Information
- Insect
- Eilema caniola
- Gene Symbol
- -
- Assembly
- GCA_949126895.1
- Location
- OX421481.1:21315756-21320764[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1 1.6e+02 4.8 2.0 3 23 252 272 250 272 0.94 2 15 5.6 8.7e+02 2.4 0.0 6 23 284 302 284 302 0.94 3 15 0.12 18 7.7 0.2 2 23 313 335 312 335 0.95 4 15 1.6 2.5e+02 4.1 4.0 1 23 479 501 479 501 0.95 5 15 0.00024 0.038 16.2 2.0 2 23 508 530 507 530 0.92 6 15 1e-05 0.0016 20.5 2.2 1 23 536 558 536 558 0.98 7 15 4.5e-07 7e-05 24.8 2.3 1 23 564 586 564 586 0.98 8 15 0.00037 0.057 15.6 1.1 1 23 592 614 592 614 0.98 9 15 9.7 1.5e+03 1.7 0.3 1 8 620 627 620 629 0.90 10 15 0.26 41 6.6 0.4 3 23 665 684 665 684 0.97 11 15 3.7e-07 5.8e-05 25.0 0.5 1 23 690 713 690 713 0.98 12 15 7.2e-06 0.0011 21.0 3.0 1 23 719 741 719 741 0.98 13 15 3.5e-05 0.0055 18.8 0.1 1 23 747 769 747 769 0.98 14 15 0.00018 0.028 16.6 0.0 2 23 775 796 774 796 0.96 15 15 0.0059 0.93 11.8 0.3 6 23 806 823 805 823 0.99
Sequence Information
- Coding Sequence
- atgaataacgGTACTGAACAACTCTATCTATTAAGTTCCATACAAACTCAGCCTCCGGGACAAGTACAAAAACAAGATGCAATGCAGAATGCAACGCCACGCAACCTCGAAAATGTGCAGGACTTTTCAAATGTATGTCGGATATGTGCCACCATCACGCAGCTTGTGGTTCCCATATTTGCAGGAGAGGGACTGGAACACCAACTGGCTGACAAAATACACAAACATTTACCTGTAAGGGTGGCTGAGACAGACCAGTTACCCCTAGTAGTGTGCTACCAATGCGTTAGCACATTGATGGCATGGCACGAGCTCGTGGAGTGCAGTGTGCAGGCTGACCGTGCACTCAAGGCTAAAATCGGCATGACCTCTAGGACTGAAGATGTTAAAAGGGAGACACACACAACAACGCCGGCAGCAAACATGAAAACTGAAGAGGATTCACAAAACaaGTCATTTCACATCATGGTGAAAAATGTACTCATCAGTTATCTTCATAATTTCAAAGTTGAAGAAAATTCCGAAATGGAATTTGTTTGCCAGAAGTGTATGGAGAAACCTGCACTGGCCACAGTGGAGAGTTTGGCAGACCATTTAAAATATGACCACAGTTCAGATAGTGTAGATGAAGCAGCTGTAGAAATGTTTATCAAGAATCATGTTACATTTGAAGAGACATTAGTTGAAGATTTTGATAGAGGTCACCATGAAGAAAGTTCAGGGAAGGTAGAAAAGCCACTACCGAATTTGTTTTGCCCGTTTTGTACAAATGTGTTTTCGTCACCAACAAGATTGGTTTGTCATCTCAACAAGCATTTCGAGGTGACGATCGAAAACGGCATTATTTGCTGCAATATCATGTATGAAGATAAGAAAAGTTTCGTGGAACATTTGCAAGAAGCCCACGTCGAAAGGAAGGTAGAAACTCtggaaaaaatgtgtaaaacTTGTGGATTTATTGCAGTGGACACGAAGGAATTACAAGAGCATATTAATAATTCGCATCAAGAAAAGGAAGTTAGCAAAAAAGAAAACGCATCTCAACTACCACATTACGACGCACAGCAAGTAGACGAGAGAGTAAAGAACGTTGTTTGTTGCAGGGACGACTCGTTCGCACTGGATGTCGCGGAAGAGGACTCAGACCAGTCGGATGATAAGCCACTGTCGACATTAACTACCAACAAATCCGAAACTCTATACACGAACTTCTACAGAGCCTTAGTCGAATTCAGAAATCATTTCGTCGACGACCACAAAACTGGAGAATGTTATCCTGATTTAACGGACTCGTCCAGTGCGTCAGAAGTCGAAGAAAGTAATTTAGATAGTTACGATGACTTAACGCAGTGTAATATGAGGAAAGATATAATGGATATAGAAACTAGACTGGAACTTAGTCAAGTGCAAACCAAAATCAACGGGAAAGTGTTTTATACGTGTAGAATCTGTAGCAAGAATCTAAGTTCGTCACATACATACGTGTTCCATAAACGGATACATACCGGCGAGAGGCCGTGCGTGTGTCACATATGCGGAAAGCAATTCCGAGCTCCGAATGGACTGCAAAGACATTTAACAGAAACGCACGAACGCTTACGAAGATACACTTGCAATTTATGTTCCAAGAACTTTGCCAACTCACAGAATTTGAAACAGCATTTTAGAATACATACCGGCGAGAGGCCGTTCGTATGTACGCAATGTGGGAAGACGTTCACTCAGAGCGGTTCCTTGCACGTCCATTTGAAAACGCACACCGAGCAGTTCCCGTATCACTGCGCTGAATGCGGAGCCAAATTCCGCCTGCGGTCCGGCCTAGCGCGGCACAGGCTCAAGCACACGGGCGAGAGACCGCACGTGTGTGCGCACTGCGGGAAAGGGGCGTATGTGGCGGTAAAAATAGAAAGAAGCGACACCGATATTTCCAAAAGGGTGGGGGATTCGCCGCCGATATCGGCCGTGGCCCCCGACGGGCGGAGAACCGCATGGTGCGACATTTGCAATAAAAGTGTATCGGTGGTCTCGTGGCGACGGCACCGCCGCCTGCACAACGGGGAAAAAAGATACAGCTGCCACACGTGCGGGCGCGCCTTCGCCGACAGTGGGAATTTAGCTCGGCACGTGAAAACTCTGCACGCGCAACAGCGGCCGTTTTCCTGCTCGATCTGCTCGAAAACATTCTCGAGAAAAGCGCACCTGGACGACCACCTGAAGTCGCACTCGGATCGCAGGGAGTTCGTGTGCGACGTGTGCGGGAAGGCGTCCAAGTCGAGCGCGGCGCTGCGCATGCACGGGCGCACGCACGGCGCGCGCGGCGTGCGCTGCGTGCAGTGCGGGGCCGCCTTCCGCCGCGCCGCCGAGCTGCGCGCGCACCGCTCCGTGCACTCGGGCGAGCGCGCGCACGCCTGCGCCTGCGGCCGCGCCTTCCGCCTGCGCACGCAGCTCAACTCGCACGCGCGGACTCACGCGCCTCCCGCGCCTCCCGCGCCTCCCGCGCCTAGCTAG
- Protein Sequence
- MNNGTEQLYLLSSIQTQPPGQVQKQDAMQNATPRNLENVQDFSNVCRICATITQLVVPIFAGEGLEHQLADKIHKHLPVRVAETDQLPLVVCYQCVSTLMAWHELVECSVQADRALKAKIGMTSRTEDVKRETHTTTPAANMKTEEDSQNKSFHIMVKNVLISYLHNFKVEENSEMEFVCQKCMEKPALATVESLADHLKYDHSSDSVDEAAVEMFIKNHVTFEETLVEDFDRGHHEESSGKVEKPLPNLFCPFCTNVFSSPTRLVCHLNKHFEVTIENGIICCNIMYEDKKSFVEHLQEAHVERKVETLEKMCKTCGFIAVDTKELQEHINNSHQEKEVSKKENASQLPHYDAQQVDERVKNVVCCRDDSFALDVAEEDSDQSDDKPLSTLTTNKSETLYTNFYRALVEFRNHFVDDHKTGECYPDLTDSSSASEVEESNLDSYDDLTQCNMRKDIMDIETRLELSQVQTKINGKVFYTCRICSKNLSSSHTYVFHKRIHTGERPCVCHICGKQFRAPNGLQRHLTETHERLRRYTCNLCSKNFANSQNLKQHFRIHTGERPFVCTQCGKTFTQSGSLHVHLKTHTEQFPYHCAECGAKFRLRSGLARHRLKHTGERPHVCAHCGKGAYVAVKIERSDTDISKRVGDSPPISAVAPDGRRTAWCDICNKSVSVVSWRRHRRLHNGEKRYSCHTCGRAFADSGNLARHVKTLHAQQRPFSCSICSKTFSRKAHLDDHLKSHSDRREFVCDVCGKASKSSAALRMHGRTHGARGVRCVQCGAAFRRAAELRAHRSVHSGERAHACACGRAFRLRTQLNSHARTHAPPAPPAPPAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00637967;
- 90% Identity
- -
- 80% Identity
- -