Ecan041134.1
Basic Information
- Insect
- Eilema caniola
- Gene Symbol
- -
- Assembly
- GCA_949126895.1
- Location
- OX421479.1:20387582-20414355[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.019 2.9 10.2 2.8 1 23 231 253 231 253 0.97 2 19 0.00022 0.034 16.3 1.3 2 23 261 282 260 282 0.94 3 19 0.43 67 5.9 0.3 1 23 286 308 286 308 0.94 4 19 0.023 3.6 9.9 0.9 1 23 313 336 313 336 0.98 5 19 0.011 1.7 10.9 0.1 1 23 340 363 340 363 0.94 6 19 0.011 1.7 11.0 0.2 2 20 379 397 379 403 0.93 7 19 0.00022 0.034 16.3 2.2 3 23 413 434 413 434 0.98 8 19 8.3e-06 0.0013 20.8 0.5 1 23 487 509 487 509 0.99 9 19 5e-07 7.8e-05 24.6 2.7 1 23 515 537 515 537 0.99 10 19 0.015 2.3 10.5 1.3 1 21 543 563 543 564 0.95 11 19 0.0021 0.33 13.2 2.3 1 23 592 614 592 614 0.98 12 19 0.012 1.8 10.9 1.1 1 21 624 644 624 645 0.95 13 19 0.0021 0.33 13.2 2.3 1 23 673 695 673 695 0.98 14 19 0.015 2.3 10.5 1.3 1 21 705 725 705 726 0.95 15 19 0.0021 0.33 13.2 2.3 1 23 754 776 754 776 0.98 16 19 0.023 3.6 9.9 2.1 1 21 786 806 786 807 0.95 17 19 2.2 3.4e+02 3.7 0.2 12 23 813 824 810 824 0.90 18 19 0.0032 0.5 12.6 3.0 1 23 830 852 830 852 0.98 19 19 0.00029 0.046 15.9 0.3 1 23 858 881 858 881 0.95
Sequence Information
- Coding Sequence
- atggAGAACGTGAAACTTTGTCGCATTTGTTTGATTATGGATGTTAAAATGCACCACTTGCAGTCATACCccttaaatacatattttgaaccAATGTTATCTGGAAGTAACGTGGACCACTCGGAGCTGAAACAAATAGACCGTCAAGGTTTAATATTATCATCAAACCTGTCTACATATTCTTTACCTTCTGTCAGCTTCGACAGTGATACTCTCATTAAAGAAGAAAGCGAGATTGAACATACATCTGACATATCTAAAGATGACGGTAGCGTTAAAGAAGAAGATGACTATGACCTGTTATGTCCGGAAAGAAGTATGTCTAGTGACGATGACGAGCCGCTGTCGGTACAGAAGGAAAAGAAGAATAAAGACAGCATAGAGAGTTTAAAAAGAGAAGATGAGATAGATGAAGACTTAGAGAGAGTTCTTTGCAAAAATGAAGGATTAGCAGGCATTGACGAAGAAAGCATAGCATGCAGTCGACCACCGATGGTAAGGAAACGAGGCCGGCCCAAAAAGAATGAGACTCcaaagaaaaaagttaagcGTAAGACTACTCATGGTGCACCATTCACTGATATCGCCTTGGATTTAGGAGATTACATCACTGTTATTAATTTATCGGTAGAAGAACAAATAGAAGAGATAAACAAAAGGAAAGAGACGTCGAACTATCTGAACTCTCCATACCAATGCAACTTGTGCTACAAAGGGTTCATCGACACCCACGCGTGGAAGCACCACGTCGGGAAACACTCCCCGAGCGCCGGTGACGTTGAATGTCCAATATGCAAGTTCCGATTTAAAACCAAGCGCGCCCTGCAGAAACATTCGTCCAATCATGAGAAGAAATATGCCTGTAAATCTTGCCCCTACGTCTCATCTAATACGACTCAAGCGAAGCAGCATCAGGGATGGCATAAAGGAGTAACTTACAAATGCAAGTTTTGTGAGGACATTTTTACCGTATGGACGTCGTACATGAGCCACGTGCGCATCAAGCACCCGTCCGAGTTCATCTGCGGCATCTGCGGCTACTCGTACATCAGCAAGCTGGGGCTCGCCATGCACAAGACTATGATGCACAAGGACGTTATGGAGAACGGCGAGACTGTAGACGAGGATGGACCTTATTGCGAAGAGTGCGATGTGAAGTTTGTGTCTATCGAGGCATTCAAACGGCACATGGTCATGTCTACGAAACACACGCGGACTACTAAGACAATtaATGGTTGCCGTACCTGCGGAGAGACGTTCAAGAATGCGGAAGACTTGAGGCTGCATCATCGCAAGGAACACGCGAGGAAAAGACCTAAGAACTACGGGAAAAAGCCGCCTAACATGAACTTTCCTGCTAAATGTGAACATtGTTCTGAAGAAATCCCTAACGGTCGAGAGCATTGGTCCCACTACCGCCGAGTGCACCCTGATAAGAAGTATCCCATACAGAAGAATTACGTGTGCGATATATGCGGCAAGAGTTTCAGGGGTAATGCTTTCCTAGTGTACCACAAGCGCACCCACACGGAAGAACGAGCATACAAATGTAATCAGTGCGACAAGGCGTTCTTCAACCGCACCAACCTGCAGGTTCACCAGAAGACCCACAGCGACACACGGCCCTACCCCTGCTCGGTGTGCTTCAAGGCGTTCAAGTGTAAAGGGGCGCTCAACCGACACTTTAGGGTAAGTGCGTATGTAGCGCAACCAGGCGGTCTTCAACCGCACCAACCTGCAGGTTCACCAGAAGATCACAGCGACACGCGGCCCTACCCCTGCTCGGTGTGCTTCAAGGCGTTCAAATGTAAAGGGGCGCTCAACCGACACTTTAGGGTTCACCAGAAGACCCACAGCGACACACGGCCCTACCCCTGCTCGGTGTGCTTCAAGGCGTTCACGTGTAAAGGGGCGCTCAACCGACACTTTAGGGTAAGTGCGTATGTAGCGCAACCAGGCGGTCTTCAACCGCACCAACCTGCAGCTTCACCAGAAGATCACAGCGACACGCGGCCCTACCCCTGCTCGGTGTGCTTCAAGGCGTTCAAGTGTAAAGGGGCGCTCAACCGACACTTTAGGGTTCACCAGAAGATCCACAGCGACACGCGGCCCTACCCCTGCTCGGTGTGCTTCAAGGCGTTCAAGTGTAAAGGGGCGCTCAACCGACACTTTAGGGTAAGTGCGTATGTAGCGCAACCAGGCGGTCTTCAACCGCACCAACCTGCAGGTTCACCAGAAGATCACAGCGACACGCGGCCCTACCCCTGCTCGGTGTGCTTCAAGGCGTTCAAGTGTAAAGGGGCGCTCAACCGACACTTTAGGGTTCACCAGAAGATCCACAGCGACACGCGGCCCTACCCCTGCTCGGTGTGCTTCAAGGCGTTCAAGTGTAAAGGGGCGCTCAACCGACACTTTAGGCGCAACCAGGCGGCCTTCAACCGCACCAACCTGCAGGTTCACCAGAAGATCCACAGCGACACGCGGCCCTACCCCTGCTCGGTGTGCTTCAAGGCGTTCAAGTGTAAAGGGGCGCTCAACCGACACTTTAGGAGCCACACGGGGCACAAGCCGTACGCGTGCGAGGTGTGCGGCAAGGCGTTCTCGCAGTCCAACAGCCGCAAGCTGCACGTGTTCACGGTGCACCTCAAGCAGCCCGCGCCCTACGTGTCGCGCCGCCGCCACCGCCCCGACAAGGACGCCGTGGCGCCGCCGCAGTTCCTCTACTAG
- Protein Sequence
- MENVKLCRICLIMDVKMHHLQSYPLNTYFEPMLSGSNVDHSELKQIDRQGLILSSNLSTYSLPSVSFDSDTLIKEESEIEHTSDISKDDGSVKEEDDYDLLCPERSMSSDDDEPLSVQKEKKNKDSIESLKREDEIDEDLERVLCKNEGLAGIDEESIACSRPPMVRKRGRPKKNETPKKKVKRKTTHGAPFTDIALDLGDYITVINLSVEEQIEEINKRKETSNYLNSPYQCNLCYKGFIDTHAWKHHVGKHSPSAGDVECPICKFRFKTKRALQKHSSNHEKKYACKSCPYVSSNTTQAKQHQGWHKGVTYKCKFCEDIFTVWTSYMSHVRIKHPSEFICGICGYSYISKLGLAMHKTMMHKDVMENGETVDEDGPYCEECDVKFVSIEAFKRHMVMSTKHTRTTKTINGCRTCGETFKNAEDLRLHHRKEHARKRPKNYGKKPPNMNFPAKCEHCSEEIPNGREHWSHYRRVHPDKKYPIQKNYVCDICGKSFRGNAFLVYHKRTHTEERAYKCNQCDKAFFNRTNLQVHQKTHSDTRPYPCSVCFKAFKCKGALNRHFRVSAYVAQPGGLQPHQPAGSPEDHSDTRPYPCSVCFKAFKCKGALNRHFRVHQKTHSDTRPYPCSVCFKAFTCKGALNRHFRVSAYVAQPGGLQPHQPAASPEDHSDTRPYPCSVCFKAFKCKGALNRHFRVHQKIHSDTRPYPCSVCFKAFKCKGALNRHFRVSAYVAQPGGLQPHQPAGSPEDHSDTRPYPCSVCFKAFKCKGALNRHFRVHQKIHSDTRPYPCSVCFKAFKCKGALNRHFRRNQAAFNRTNLQVHQKIHSDTRPYPCSVCFKAFKCKGALNRHFRSHTGHKPYACEVCGKAFSQSNSRKLHVFTVHLKQPAPYVSRRRHRPDKDAVAPPQFLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -