Ecan016597.1
Basic Information
- Insect
- Eilema caniola
- Gene Symbol
- -
- Assembly
- GCA_949126895.1
- Location
- OX421465.1:4738897-4739598[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7e-10 2.5e-07 32.0 0.0 3 37 16 51 14 58 0.86
Sequence Information
- Coding Sequence
- ATGCCTCGAGTATACAAACGGAAGACTGACAAAAAGAACACACTCGAAACTTTAAAAATAGCTATAAGGGAGATTCAAGAAAAGAATTTAAGTTTTAGAAAAGCCGCGGAGAAATATAACGTACCTCGAGCTACATTGTTAGATCAGGTCAGAAAGTCTGCTGAAGATGTCAAAGATCCCAAACGCGGTAAGAAACCAATCTTTAATGAATCTCAAGAGCAAGAGCTCGTTCAGTTCATTCTGAAGTCGTGTAGAAATTATTTCGGAATAACTGCAATCACGTTTAGAAAAGTCGCATTCGATTTTACAACAGCTAATGGCTTGGCACACAATTTTAACAAAGCAACGGGTATAGCTGGAATAGAGTGGTATTACTCGTTTATGTCAAGGCATCCTGAAATATCACTCCGTAAGCCGGAAGCGACATCTTTAAGTCTAATCACTGCGtttaatgaagaagaagtagatattttttttactaacctgacACACTTGATGTCCAAACATAATTTCAGGCCAGATGCCATTTATAATGTTGATGAAACAGGCATAAGCACTGTccaaataaactcaaaaattcTTGCGCCTAAAGGCTTAAAACAAGTTGGCAAGTGCACAAGTGCTGAAAGAGGATCCTTGACAACAGTCGTGAATGCATGTAGCGCAAGCGGCAATTATGTGCcactatttttttatctttaa
- Protein Sequence
- MPRVYKRKTDKKNTLETLKIAIREIQEKNLSFRKAAEKYNVPRATLLDQVRKSAEDVKDPKRGKKPIFNESQEQELVQFILKSCRNYFGITAITFRKVAFDFTTANGLAHNFNKATGIAGIEWYYSFMSRHPEISLRKPEATSLSLITAFNEEEVDIFFTNLTHLMSKHNFRPDAIYNVDETGISTVQINSKILAPKGLKQVGKCTSAERGSLTTVVNACSASGNYVPLFFYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00931176; iTF_00074416; iTF_00000254;
- 90% Identity
- iTF_00000254; iTF_00931176;
- 80% Identity
- -