Basic Information

Gene Symbol
ct
Assembly
GCA_949126895.1
Location
OX421480.1:1444243-1463900[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 5.8e-27 9e-23 81.8 0.0 3 70 147 215 145 221 0.94
2 3 6.7e-32 1e-27 97.6 0.0 4 77 545 619 543 621 0.96
3 3 9.6e-31 1.5e-26 93.9 0.0 3 75 748 821 746 825 0.95

Sequence Information

Coding Sequence
ATGCTCCGAGCACTAGATTTGGGCGGAGGCGAACGGTCACTTGAGCGATCGCTTGAAAGATCGCTCGAAAGATCGCTTGAGCGCAAACCTGAGTTGCGCTCCCCTAGTGTTGCGCCGTCGCACCGCGACAACTCCGTGGAGCGCGAGCGCAGCGCCGAGCGCCGGGACACAGGTGGCGAGGAGTGGCCGGTATCGCCGCCGCCGCTCAACAACAACACCACGCACCACAACAACAACGGGCCCACGCCACTGCCGCTGCCGCCGCCGAGCCCCTTCCGCTTCGAGGAGCACCGCACGTACCGCTTCGCCGAGGACATGGGCCCCCTGCCCCCTGGCGCGCTCGTCGGCCGGCTGGGCGACTCGCTCATCCCTAAAGGCGACCCCATGGAAGCGCGACTGCAAGAAATGCTGAGATACAACATTGACAAATATGCCAACACCAACCTTGATACGCTACACATCAGCCGAAGAGTCAGAGAGCTACTCTCCGTGCACAACATTGGACAGAGACTGTTTGCCAAATACGTCCTGGGACTGTCGCAAGGGACGGTATCAGAACTGCTGTCGAAGCCGAAGCCCTGGGACAAGTTGACGGAAAAAGGGAGAGACTCGTACAGGAAAATGCACGCGTGGGCCTGCGATGAGGCAGCCATCATGCTGCTCAAGTCACTGATCCCTAAAAAAGTTGGGACCAAAGATGGTGCGGTGTATGGCCGCCCGGATGGCGAAGGCGACGACAGGCTCGCACACGCGATACTCAATGAAGCCTCACACTTAATGAAGACGCCGACTGGTCACCCCAACAACGATGACTCCAGAAGCAATGACGATTCCAGTTCGCCGAGAACACAATGTCCGTCTCCGTTTTCCAATAAGGACTCCAGTCAAAATAGGAGACTTAAGAAGTATGAGAACGATGACATTCCTCAAGAAAAGGTGGCACGAATCTATCAGGAAGAGTTGACCAAAATCATGAGCCGAAGAGTCGAAGACATGCGCCGTGAAGGTTTCCCTGGCATGTTTCCTCCATTTTTCAGTAGCGGCATGCCACCACACATGGAACGGCCACCAGAAGACATCCGGATGGCACTAGAAGCTTACCACAGAGAACTTGCCAAAATCCAGCCAGCTGGAAACATTCCTAATCTACACACCTTGCCAGGAATGCCACCCTTCCCTAACCTCCTTGCGCTGCAGCAGCAGGCTATGCAACAAGCGCAAAATCAACAAATGAACGGCTCTGGAGCGGTCCAAGATCTCTCTTTGCCTAAAGATAAAAACACCAAAATTAATGGAATGACTGATAGTGATAAGGATAGGCCAATGGATGCCGAAGAGGCTATTAGACACGCGGGAAGCGCGTTCTCATTAGTAAGGCCCAAACTAGAGCCTGGGCAGCAATCAACTGGATCATCAGCATCCAGCCCGCTAGGCAATGCAATATTACCGCCAGCAATAACCCCTAACGAAGACTTCAGCAGTTCAGCGGCAGCAAGCCCTTTGCAGAGAATGGCGTCTATTACGAATAGTCTGATTTCCCAACCATCGAACCCTCCTCATCACCCACCTCCGCAGCGGTCGATGAAGGCAGTTCTTCCTCCGATCACGCAGCAACAGTTTGAtctctttaataatttaaatactgAGGATATAGTGAGGAGAGTGAAGGAGGCTTTAAGCCAGTATTCTATCAGTCAAAGGCTATTCGGTGAATCCGTCCTCGGACTATCACAAGGATCCGTAAGTGATTTACTGGCTAGGCCCAAACCATGGCATATGCTAACACAGAAGGGAAGGGAGCCGTTCATCCGCATGAAGATGTTCCTGGAAGATGACAATGCTGTTCACAAACTAGTCGCATCTCAGTACAAAATCGCTCCTGAAAAGTTGATGAGGACTGGAAACTACAGCGGAGCGCCTCCATGTCCGCCGAATATGACCAAACCGATGCCTCCAACGCAGAAAATGATTTCCGACGCGACGTCATTACTCAGCAAAATGCAACAGGAGCAACTCTTGGGACCAGGGCACCTTGGCCACCTGGGCGCGTCTACGCCACTGCTTCTGACCCCGCCTGGCTTCCCACCACACCACGCGGTCACACTACCTCCACAGCACCACGACAACAACAACAAGGAGAGGAAACCTCCACCTCCTCCACAACCTCATCACCAGCCTCCAATCATGCGTAGCCTCCACCAACACATATCGCCTAGTGTCTACGAAATGGCTGCACTAACACAAGACTTAGATACACAAACTATCACCACTAAAATCAAGGAGGCATTACTAGCAAACAATATCGGGCAGAAAATATTCGGTGAAGCTGTTTTAGGACTTTCACAGGGTTCCGTCAGCGAATTGCTATCGAAACCAAAACCCTGGCACATGCTCAGCATCAAAGGGCGAGAACCCTTTATTCGTATGCAGCTGTGGTTGAGCGATGCTCACAATATTGACCGTCTTCAAGCTTTGAAGAATGAAAGAAGAGAAGCGAGCAAAAGACGGAGATCTAGTGGCCCCGGACAAGATAATTCTTCCGACACCTCATCGAACGATACTTCTGAATTTTATCACTCGAGCTCACCGGGCCCTACGACTGGAGCGCCCTGTGCCAAGAAACAACGTGTTTTATTCTCAGAAGAGCAGAAAGAGGCTCTTAGGCTAGCTTTTGCACTCGATCCTTACCCAAACATGCCAACTATCGAGTTCCTTGCGGCAGAATTAGGCCTCTCATCGAGAACTATCACCAACTGGTTTCACAATCACCGCATGCGCTTAAAACAGCAGGCACCTCATGGGTTGCCGGCTGAACCTCCAGCGCGAGACCAGTCCTCGGCTCCCTTCGACCCCGTGCAGTTCCGGCTCCTTCTCAACCAAAGATTATTGGAGCTTCAAAAAGAAAGAATGGGCTTAGCGGGCGTGCCCCTACCTTACCCGCCGTACTTTGCGGCAAATTCGAACCTGGCGGCGCTCATCGGTCGTGGACTGATGCCGCCCGAAGAACAGGTGAAAGATCAGTCCGGCGGCCTCGACCTGTCGATGCCGCTCAAACGTGAACCCGACGGTGACGACTTCGAGGACGAGGATGTGGAGAGTAATCTCGGCTCCGAGGACTCTTTGGATGAGGAATCTAAGACTGAGCCGAAAGCGGCGTCCACCCCGGCGGGCCGGTCCAGCCGACGGAAACCCGCCGCTCCGCAGTGGGTCAACCCGGACTGGCAGGACGAGAAGCCGCGCAACCCTGACGAAGTGATAATTAATGGTGTGTGCGTGATGAGAAGCGATGACTTTAGACGCGAGGCGGAGGAAACCGTTCGCGTGGAGCCATCGCCCGTGCCGCGCGAAGGTTCCCCGGCCGCGTCGCCCGCGCCGCGCACGCCGCGCACGCCGCACACTCCGCACACGCCGCACACGCCGCACACGCCGCGCCCGCCGCACACGCCGGATGACGTCATCCCCGAAGACAAAATCAAGGCGGAGACCGACGACGGCTGGGACTACTGA
Protein Sequence
MLRALDLGGGERSLERSLERSLERSLERKPELRSPSVAPSHRDNSVERERSAERRDTGGEEWPVSPPPLNNNTTHHNNNGPTPLPLPPPSPFRFEEHRTYRFAEDMGPLPPGALVGRLGDSLIPKGDPMEARLQEMLRYNIDKYANTNLDTLHISRRVRELLSVHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDEAAIMLLKSLIPKKVGTKDGAVYGRPDGEGDDRLAHAILNEASHLMKTPTGHPNNDDSRSNDDSSSPRTQCPSPFSNKDSSQNRRLKKYENDDIPQEKVARIYQEELTKIMSRRVEDMRREGFPGMFPPFFSSGMPPHMERPPEDIRMALEAYHRELAKIQPAGNIPNLHTLPGMPPFPNLLALQQQAMQQAQNQQMNGSGAVQDLSLPKDKNTKINGMTDSDKDRPMDAEEAIRHAGSAFSLVRPKLEPGQQSTGSSASSPLGNAILPPAITPNEDFSSSAAASPLQRMASITNSLISQPSNPPHHPPPQRSMKAVLPPITQQQFDLFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGNYSGAPPCPPNMTKPMPPTQKMISDATSLLSKMQQEQLLGPGHLGHLGASTPLLLTPPGFPPHHAVTLPPQHHDNNNKERKPPPPPQPHHQPPIMRSLHQHISPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNIDRLQALKNERREASKRRRSSGPGQDNSSDTSSNDTSEFYHSSSPGPTTGAPCAKKQRVLFSEEQKEALRLAFALDPYPNMPTIEFLAAELGLSSRTITNWFHNHRMRLKQQAPHGLPAEPPARDQSSAPFDPVQFRLLLNQRLLELQKERMGLAGVPLPYPPYFAANSNLAALIGRGLMPPEEQVKDQSGGLDLSMPLKREPDGDDFEDEDVESNLGSEDSLDEESKTEPKAASTPAGRSSRRKPAAPQWVNPDWQDEKPRNPDEVIINGVCVMRSDDFRREAEETVRVEPSPVPREGSPAASPAPRTPRTPHTPHTPHTPHTPRPPHTPDDVIPEDKIKAETDDGWDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01338275;
90% Identity
iTF_01443621;
80% Identity
iTF_00636163;