Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00097 0.055 14.0 4.6 2 23 50 71 49 71 0.97

2 6 0.0003 0.017 15.6 0.8 1 23 77 99 77 99 0.98

3 6 0.0046 0.26 11.9 2.8 1 23 105 127 105 127 0.98

4 6 0.012 0.65 10.6 0.7 2 22 129 149 128 149 0.95

5 6 0.00012 0.0069 16.8 1.3 1 23 162 184 162 184 0.98

6 6 0.0016 0.088 13.3 0.7 2 23 186 207 185 207 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00097	0.055	14.0	4.6	2	23	50	71	49	71	0.97
2	6	0.0003	0.017	15.6	0.8	1	23	77	99	77	99	0.98
3	6	0.0046	0.26	11.9	2.8	1	23	105	127	105	127	0.98
4	6	0.012	0.65	10.6	0.7	2	22	129	149	128	149	0.95
5	6	0.00012	0.0069	16.8	1.3	1	23	162	184	162	184	0.98
6	6	0.0016	0.088	13.3	0.7	2	23	186	207	185	207	0.95

Coding Sequence: ATGAGTTTCacaacatacacacacaaaGCGGCATCAAAAGAGCTTATGTTCATTGACGTAGGCCCGAAGCCAGCCACCACTGATATCAAGGAAGAACGTTCCTCATCTCCAGATGAAAGACCGAAGAAGAAGAGCAAAGAGCGTCTCCAATGCTCGGAATGCTCGCACACCACGTGCTCCGCCGAGCAGATGCTGCGTCACATGCGCAGGCACCGCGGCGAGAACCCGTTCCAGTGCAGCTGGTGCGATTACTCCACCTACAACAGCACGCTATTCCAGGAACACGTCAATATACACCTAGGCATTAAGCCGTACAAATGTAACCTGTGCGACTACCGCAGCGTGTCGAAGAAGTACATAAAGAAGCACGAGTCTCGACACGGGAAGTGCCACAAATGCGGCATCCTGACGCGCGACATACGCCTGCTGCGGAAACACTGGCGTCGGAGCGCCTGTGGCGCAGACGACACTCCTATTGACAAATACACATGCAAGAGTTGCAATGTATATTACGACTCTAAAGACAGTCTGGAGCAGCACATCCGATACCACAAGCCGTGTCCCGAGTGCGGAGAGAGGTTCTCCATGGTGGCACTTCATAAACACAGAAAGAAAGCCCACGGAATCACAAACGTGGTGGGCGGGAAAAAGAAGTTCAAATGCGCGATTTGTGAGTGGGAATCCAACTGCTACCAAAAGATACTGCTGCACCTGATCCACCACCCAAACCAAAAAGTGGACCGCTCTATCGACGTCACGCCGCTAGTCAAAGCTGGCATCATGGAGAAAgttgatgaagattcctcaatAAATACGACCtga
Protein Sequence: MSFTTYTHKAASKELMFIDVGPKPATTDIKEERSSSPDERPKKKSKERLQCSECSHTTCSAEQMLRHMRRHRGENPFQCSWCDYSTYNSTLFQEHVNIHLGIKPYKCNLCDYRSVSKKYIKKHESRHGKCHKCGILTRDIRLLRKHWRRSACGADDTPIDKYTCKSCNVYYDSKDSLEQHIRYHKPCPECGERFSMVALHKHRKKAHGITNVVGGKKKFKCAICEWESNCYQKILLHLIHHPNQKVDRSIDVTPLVKAGIMEKVDEDSSINTT

Sequence clustering based on sequence similarity using MMseqs2