Basic Information

Gene Symbol
-
Assembly
GCA_017562165.1
Location
chr29:5381015-5392867[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 2e-06 0.00011 22.5 2.3 1 23 2361 2383 2361 2383 0.99
2 11 0.058 3.3 8.4 4.9 1 23 2389 2412 2389 2412 0.95
3 11 0.051 2.9 8.6 4.0 1 21 2417 2437 2417 2439 0.94
4 11 0.014 0.77 10.4 4.3 1 23 2445 2467 2445 2467 0.97
5 11 0.058 3.3 8.4 2.8 1 23 2473 2495 2473 2495 0.97
6 11 0.0059 0.33 11.5 2.6 1 23 2501 2523 2501 2523 0.96
7 11 0.068 3.8 8.2 1.7 2 23 2529 2550 2528 2550 0.96
8 11 0.0082 0.46 11.1 1.8 1 23 2556 2578 2556 2578 0.97
9 11 1.7e-05 0.00095 19.5 0.9 1 23 2584 2606 2584 2606 0.98
10 11 9.8e-05 0.0055 17.1 4.9 1 23 2612 2634 2612 2634 0.99
11 11 0.066 3.7 8.2 7.0 1 23 2639 2662 2639 2662 0.95

Sequence Information

Coding Sequence
ATGACTGACACAATTAAAGTAACAGAAACGTTAATAGTGAAGATTGAACCGGACAATTCAGAGGAATTAGATGAAAACTCTAAAACACAGTTCAAAGAACAAGAACTGTTTGACTTAAAGATGGAACAACCATCTGAACGAAAAACAGTAATACCAAGATACCAAGAATCAAGAGAAATCACATCAAATTCAAGCCAAATGCAATCAATACCAAAGGTTCTACTCCAACCATCAGAACCAATAGCCAACTCAAGTAAAGGATATGAGTTAAATTTAAAACCTTCAGAGTTGAAAAGCAGCCTGATGTCTATTTCAAGTATAAAACAACCAACGCAGTCAAGTATCGATCAGCCATCCAGTTCAAGATTACAACAATGTGAGTCTAATTTACGACCTTCAGGACTAGGCAGCAACCAGACATCAATTTCGAGTATAGTGCAATCAACACAATCAACTTTTCTTCAGCCATCCTGCTCAAGATTACAACAGTGTGGGTCAAATTTACAACCTTCAGAGTTAAGCAGCAACCTAACTTCAATCTCAAATGTAGTACAATCAAATATCGTTCAGCCATCCAGCACAAGATTACAACAATCTGAGTCAAATTTACAACCTTCAGAGTTAAGTAGTAACCCAACACCAATCTCAAATATAGTACAATCAAATATCGTTCAGCCATCCAGCACAAGATTACAACAATCTGAATCAAATTTACAATCTTCAGAGTTAAGCAGTATCCCGACACCAATCTCAAATATAGTACAATCAAATATTGTTCAGCCATCCAGTATAATATTACAACAATCTGAGTCAAATTTACAACCTTCAGGGCTAGGAGGCAACCTGACGTCAATTTCGAGTATAGTGCAATCAACACAATCAACTTTTCTTCAGCCATCCAGCTCAAGATTACAACAGTGTCAGTCAAATTTACAACCTTCAGAGTTAAGCAGCAACCGGATATCAATCTCAAATATAGCACAATCAAATAGCATTCACCCATCCAGCATAAGATTACAACAATCTGAGTCAAATTTACAACCTTCAGGGCTAGGCGGCCACCTGACGTCAATTTCGAGTATAGTGCAATCAACACAATCAACTCTTCTTCAGCCATCCAGCTCAAGATTACAACATTGTGGGTCAAATTTACAACCTTCAGAGTTTGGCAGCAACCTAACTTCAATCTCAAATATAGCACAATCAAATAGCATTCACACATCCAGCACAAGATTACAACAATCTAAGTCAAATTTACAACCTTCAGGACCAGGAGGCAACCTGACGTCAATTTCGAGTATAGTGCAATCAACACAATCAACTCTTCTTCAGTCATCCAGCTCAAGATTACAACAGTGTGGGTCAAATTTACAACCTTCAGAGTTAGGTAGCAACTGGACATCAGTTTCaaatattgtacaatttcaGCCATCCAGCTTAACAATACAATTTGAGTTGAATTTGCAACCTTCAGAGTTAAGCAGCAACCTGACATCAATTTTAAGAATAATACCATCAACAAAATCGAGTATCTTTCAGCTATCCCTCTCAAGATTACAACAATTTGACTCAAATTTACAACCTTCAGAGATAAACGCCGACCTGACACCAAACTCAAGTACAGTAGAATCAACCCAACCCACAATACTTCAACCATCCGAACCAAGATTACAACAATGTGAGTCAAATTTACAAGCTTCAGTAAAAAACGCCAACTTTACACCAAACTCAAGTATAATAGAATCAACCCAACCGCCAATGCTTCAACCATCCGAACCAAGATTACAACAATGTGAGTCAAATTTACAAGCTTCAGTAATAAATGCCAACTTTACACCAAACTCAAGTATAATAGAATCAACCCAACCCCCAATGCTTCAACCATCCGAACCAAGATTACAACAATGTGAGTCAAATTTACAAGCTTCAGTAATAAATGCCAACTTTACACCAAACTCAAGTATAATAGAATCAACCCAACCGCCAATGCTTCAACCATCCAAACCAAGATTACAACAATGTGAGTCAAATTTACAAGCTTCAGTAATAAATGCCAACTTTACACCAAACTCAAGTATAATAGAATCAACCCAACCGCCAATGCTTCAACCATCCAAACCAAGATTACAACGATGTGAGTCAAATTTAGAAGCTTCAGTAATAAATGCCAACTTTACACCAAACTCAAGTATAATAGAATCAACCCAACCGCCAATGCTTCAACCATCCAAACCAAGATTACAACAATGTGAGTCAAATTTACAAGCTTCAGTAAAAAACGCCAACTTTACACCAAACTCAAGTATAATAGAATCAACCCAACCCCCAATGCTTGAACCATCCGAACCAAGATTACAACAATGTGAGTCAAATTTACAAGCTTCAGTAATAAATGCCAACTTTACACCAAACTCAAGTATAATAGAATCAACCCAACCCACAATACTTCAACCATCCGAACCAAGATTACAACAATGTGAGTCAAATTTACAAGCTTCAGTAAAAAACGCCAACTTTACACCAAACTCAAGTATAATAGAATCAACCCAACCCCCAATGCTTGAACCATCCGAACCAAGATTACAACAATGTGAGTCAAATTTACAAGCTTCAGTAATAAATGCCAACTTTACACCAAACTCAAGTACAATAGAATCAACCCAACCCCCAATGCTTCAACCATCCGAACCAAGATTACAAAAAAGGGAATCAAATTTACAACCTTCAAAAATAAACACCAACCTGACACTAAACTCAAGTACAATACAATCAACACAATCCACTCTGCTTCAATCATCTGAACGAACAATCGATTCCAGCGCTAATGCAATCCATAAACTGGCACCCAATTTAAGCACGACACCAATGAAACCAACTATAACTAAACAATCGCAACAAACACCCAACCCAAAGAAACGGactctaaaatttaatcatcCCACAGCCGGATTTAAGACACCACGATTaatgaaaacatataacattCAGCCAGtaacagtaaaaaaagaaaacccatCTGAATGCAATGGATTACaaacagtaaaaaaagaaaaagtagaGTTGGTTGATTTACACGAAGTTTATAATTTTcagtcaaaaaatataaaacaagaaaaaccatttcatttatttaggtcACGGCTAAGAAGATTAAAAAGATCAGAGTCAAATACGGGaataaaccaaaataaatcACAATTAATAGATACAAATCTACAATTAACGGTTGAAGAGCAATCAGAGTCCAACATACCACAACCAATAAAATCAGAAATTCAAACAGTTGAAACAGGGTCGACTATTAGAGCCCAACCACTAGATCCTAGCcgttcaataataaataatcaaacaaaattggcacatcaacaaataaaaactgTTAATAATTCTAGTTATGACAACAAATTAGAACAAAAAGTACACACACAATTATTTGAAACGAGTACACATAAAACAGAAAATAGTAAACGAAAAATAGAATCAAAACTGCAGCAACCAGCAGAATCGACATCAATAGTAGCATTGGAACAACAATATcttaaaatacaacaaaaaataagatCCATAGATCGGCGACTAAAACCCAGAGATGAGAACATAAAAGAACTAGAGAAGTTGGAGTTAGAGTCGCGTCAACAACCATTACAGTCACGTCAACGTCTATTCGAGCCAAATCAACAACCCTCAGTGACAAATTACGAAACAAATCAACAACTCTTACAGACAAGTCAACAACCCTTAGAGACAATTCAACAACCCTTAGAGACAAGTCAACAACCCTTAATGGTAAGTCAACATTCTTTGAAATCACGTCAACAACCATTACAGTCACGTCAACATCTATTAAATCCAAGTCAAAAACCCTTAGAGCAAAGACAACAACCGTCAGAGACAAGTCAACGATCTTTAGAAACACGTCAACAAACCTTAATGGGAAGTCAACATTCTGTGGAATCACGTCAACAACCATTACAGTCACGTCAACATCTAATAAATCCAAGTCAAAAACCCTTAGAGCAAAGTCAACAACCATTTATGCGAAGTCGACAATCTTTGAAGTCACGTCAACGACGACTATTACAACAAAGTCAACGACAATTTAAATCGCGTCGTCGAAATTTACTTCTACATCTACTAGAGCCAAATCAACGACCATTAATGCGAAGTCGACATTATTTGGAGTCACGTCAACAATTATTCGAGCCAAGTAAACAACCCTCAGAGACAAGTCACGAAACAAATCAAAAATCCTTACAGACAAGTCAACAACCCTTTGAGACAAGCCAACAACCCCTAGAGACAAATCAACAACACTTAGAGACAAGCCAACAACCCTTAGAGACAAGTCAACAACCACTAATGCCAAGTCGACATTTTTTGCAGTCACGTCAACACGTATTAGAGTTTAATCAACAAACAGAATCAAGTGAACAAGCATTAGAGCCAAGTCAACAAGCATTAGAGTCGAATCAAATACCATTAGAATTATCTCGATATACATTAGAGCCAAGATTAGAATCAAATCAAGAACCTTTAGGATTAAGTCTTGGACTAAAAGAGTCGCTTCGAAaagcattcaaacaaaagcgACAATCCatcaaaataaatcaacaaacatCAGAGCTCAGCCAACAACCTTTAGAGCCAAATATAGAACCATTAGAATCTAAACAACAATCACTAGAGTCTAGTCAAGAACGATTAGAGTTATTTCAACAATCGTTAGaggtaagaaaaaaaacattagagtCTAGCCAACAAATATTACAATCAAGTCAGCAAGCATTAGAGCCGTTAGAGCTGCGGCATCAAATATTTGAAACGAGTAAAAAATCATTAGATTCGAGTCAACAAGTATTAGAATCATATCAACAACAGTTAGATCCAAGTCAACTACTATTAGAGTCAAATCAAGAACAATTAGAGTTATGTCGAGAATCGTCAGAGATAAGACAAAAACCATTAGAGTCAAGCcaacaaacattacaaacaaGTCAGCAAGCATTAGGGCAATTGGAGCGTCGCCAAAACATATTAGAGACGAGTAAAAAATTATTAGAATCAAGTCGACAATCGCTAGAGCCGAGCCAACCACTATTAGAGTTAAATCAAGAACCATTACGATCAAGACCAAAATCATCACAGTCAAGTCAAGAACTATTAGAATCATGTCGACAAGCATTAGAGTCAAGGCAACAAGCTTTAGAGTCAAGTCAACAAGCATTAGAATCATATAGGCAAATATTAGAACCGAGACAACTGTTATTAGGGTTAAATCAACTAATCGGACAATCATCACAGTCAAATCAAGAACCAATAAAATCATGTCGACAAGTATTAGATTCAAGACAACGACCATTAGAATTAAGTCAGCAAGAACTAGAGTCAGGTCAACGGCCGTTAGGCCCGAGCAAACTACCATTAGGGACAAATCAAGAACTATTAATATCACGACAAAAATCATTACAGTCAAATCAAGAACCGTTGAAATCATCTCAACAAGCATTCGACCCAAGACAGCAACCACTAGAGTCAATCCAACCAGCACTACAGTCGAGCCAACCAACATTTGAGTCATTGGAATCATGTCGACAAGCATTAGAGTCGAGCCGACCAGCATTAGAGTTATCGGAATCATGTCGACAAGCATTAGACCCAAGACAACCACTAGAGTCAAACCAATCAGAATTAGATACATTGGAATCATGTCGAAAAGCATTCGACCCAAGACAACAACAACTAGAGTCGATCCAACCAGCATTAGGGCCATGTCGACAACCCTTAAAGCCGAGCCAACCACCATTTAAGGTAAATCATGAAACATTGCAATCAGTTAGGCAATTCGACGAAGAATCATTTCAACGAACATTCACGTCAAGTGGTCACCTCTTAGAGATAAGTCAGCAATCCTTAGAAATAAGTCAGCAACCCTTAGAAATAAGCCAGCAGCCCTTATACACAATTCATGAATTCTCAGAGATAAGTCAGGAAACCTTAGACACAAGCTTACAATTCTTACAGACATTCTGTCAACAACCCTTAGAGGCAACTCAAAATATATTAGAAACAAATCAACAACCCTTAGAGACAAGTCAACAACCTTTAGAGACAAATCAGCAACCTTTAGAGACAAGCCAGCAGGCCTTAGATACCATTCATGAATTCTTAGAGATAAATCAGGAAACCTTAGACACAAGTCTACAACTCTTACAGACAAATCAACAAACGTTAGATAATACTCAACAGCCCTTAGACACAAGTCATCATATCTTTGAGACAAATCAACAACCCTTAGACACAAGTCATCATATCTTAGAGACAAATCAACAACCCTTAGATACATGTCATCATATCTTAGAGACAAATCAACAACCCTTAGACACAAGTCATCATATCTTAGAGACAAATCAACAACCCTTAGTCACAAGTCATCATATCTTTGAGACAAATCAACAACCCTTAGACACAAGTCATCATATCTTAGAGACAAATCAACAACCCTTAGTCACAAGTCATCATATCTTTGAGACAAATCAACAACCCTTAGACACAAGTCATCATATCTTAGAGACAAATCAACAACCCTTAGACACAAGTCATCATATCTTTGAGACAAATCAACAACCCTTAGACACAAGTCATCATATCTTAGAGACAAATCAACAACCCTTGGACACAAGTCATCATATCTTAGAGACAAATCAACAACCCTTAGACACAAGTCATAATATCTTAGAGACAAATCAACAACCCTTAGACACAAGTCATAATATCTTAGAGACAAATCAACAACCCTTAGTCACAAGTCATCATATCTTTGAGACAAATCAACAACCCTTAGACACAAGTCATCATATCTTAGAGACAAATCAACAACCCTTGGACACAAGTCATCATATCTTAGAGACAAATCAACAACCCTTAGACACAAGTCATAATATCTTAGAGACAAATCAACAACACTTAGAAAGCCAACAACCCTCAGAGTCAAGTCGACAACCCTCAAAGACAAGTCAACAAATTTCTGAAGAAATGGAATTGGATCCcttaacctcaaaatcatttGATTCTGATAAACCTTATCAATGTCCGATATGCCATTATAAATTTGTTAAAGCAAGTTTATTGAGAAGACACCAATTGACACACACTAAAACCaaaccgtttaaatgttctatgtGTAAATATGAATGTGCCCGTctggattatttaaaaaaacactttattagaaAACACAGCGATAGAACATTCATGTGCAATGACTGTGACTATAGCACGACGAATAAGAAAGAAATGGTAAAACATACAAAATGTCATTTAGATAGAAgaatatttaaatgtaagttATGTGATTATACgtgttataaaaatgttacgttaaAATATCATATGCTAGGCCATGCTGGTGAGAAGCCATATGCTTGCAAATATTGTGACTTCAAGTGTATTAGACCAACAACTATGAAATCACACGAAGACACTCACACTAAACAAAAGATATATTCGTGCCGACACTGCGACTATACGACAATTCGTTTAGACTCCCTAAGAAAACACGAATACATACATAAAGTAAAACCGTTATCCTGTGATATCTGTGACTTTAAAACTGTTAATATAAAAGATTTGAGACAACATTTACACAAACACACCGGCCAGAAACCGTACGCTTGTGATCAATGTAGTTTTAAAACGGCTTCGTCATATAACCTCAAAACCCATAAGAGATTGCACAGCGGTGAGAAGCCATATAAATGTGAGTTGTGTGATAATAGTTATACTAGAGCCGATACATTGAAGAAACACATGGACTCCCATGCGGATGACAAGAGATTCAAATGTGATGTATGTGATTATAAGTGCACTCAAAAAGCTATGTTGCAGAGACACAGGCGGAAGCACACGGGGGAGAAGTTTCAGTGCGATTTGTgtgattttaaatgttttaatcaGAGTTATTTGAAAAAACATAAGAGTAAAAAGcattgtttataa
Protein Sequence
MTDTIKVTETLIVKIEPDNSEELDENSKTQFKEQELFDLKMEQPSERKTVIPRYQESREITSNSSQMQSIPKVLLQPSEPIANSSKGYELNLKPSELKSSLMSISSIKQPTQSSIDQPSSSRLQQCESNLRPSGLGSNQTSISSIVQSTQSTFLQPSCSRLQQCGSNLQPSELSSNLTSISNVVQSNIVQPSSTRLQQSESNLQPSELSSNPTPISNIVQSNIVQPSSTRLQQSESNLQSSELSSIPTPISNIVQSNIVQPSSIILQQSESNLQPSGLGGNLTSISSIVQSTQSTFLQPSSSRLQQCQSNLQPSELSSNRISISNIAQSNSIHPSSIRLQQSESNLQPSGLGGHLTSISSIVQSTQSTLLQPSSSRLQHCGSNLQPSEFGSNLTSISNIAQSNSIHTSSTRLQQSKSNLQPSGPGGNLTSISSIVQSTQSTLLQSSSSRLQQCGSNLQPSELGSNWTSVSNIVQFQPSSLTIQFELNLQPSELSSNLTSILRIIPSTKSSIFQLSLSRLQQFDSNLQPSEINADLTPNSSTVESTQPTILQPSEPRLQQCESNLQASVKNANFTPNSSIIESTQPPMLQPSEPRLQQCESNLQASVINANFTPNSSIIESTQPPMLQPSEPRLQQCESNLQASVINANFTPNSSIIESTQPPMLQPSKPRLQQCESNLQASVINANFTPNSSIIESTQPPMLQPSKPRLQRCESNLEASVINANFTPNSSIIESTQPPMLQPSKPRLQQCESNLQASVKNANFTPNSSIIESTQPPMLEPSEPRLQQCESNLQASVINANFTPNSSIIESTQPTILQPSEPRLQQCESNLQASVKNANFTPNSSIIESTQPPMLEPSEPRLQQCESNLQASVINANFTPNSSTIESTQPPMLQPSEPRLQKRESNLQPSKINTNLTLNSSTIQSTQSTLLQSSERTIDSSANAIHKLAPNLSTTPMKPTITKQSQQTPNPKKRTLKFNHPTAGFKTPRLMKTYNIQPVTVKKENPSECNGLQTVKKEKVELVDLHEVYNFQSKNIKQEKPFHLFRSRLRRLKRSESNTGINQNKSQLIDTNLQLTVEEQSESNIPQPIKSEIQTVETGSTIRAQPLDPSRSIINNQTKLAHQQIKTVNNSSYDNKLEQKVHTQLFETSTHKTENSKRKIESKLQQPAESTSIVALEQQYLKIQQKIRSIDRRLKPRDENIKELEKLELESRQQPLQSRQRLFEPNQQPSVTNYETNQQLLQTSQQPLETIQQPLETSQQPLMVSQHSLKSRQQPLQSRQHLLNPSQKPLEQRQQPSETSQRSLETRQQTLMGSQHSVESRQQPLQSRQHLINPSQKPLEQSQQPFMRSRQSLKSRQRRLLQQSQRQFKSRRRNLLLHLLEPNQRPLMRSRHYLESRQQLFEPSKQPSETSHETNQKSLQTSQQPFETSQQPLETNQQHLETSQQPLETSQQPLMPSRHFLQSRQHVLEFNQQTESSEQALEPSQQALESNQIPLELSRYTLEPRLESNQEPLGLSLGLKESLRKAFKQKRQSIKINQQTSELSQQPLEPNIEPLESKQQSLESSQERLELFQQSLEVRKKTLESSQQILQSSQQALEPLELRHQIFETSKKSLDSSQQVLESYQQQLDPSQLLLESNQEQLELCRESSEIRQKPLESSQQTLQTSQQALGQLERRQNILETSKKLLESSRQSLEPSQPLLELNQEPLRSRPKSSQSSQELLESCRQALESRQQALESSQQALESYRQILEPRQLLLGLNQLIGQSSQSNQEPIKSCRQVLDSRQRPLELSQQELESGQRPLGPSKLPLGTNQELLISRQKSLQSNQEPLKSSQQAFDPRQQPLESIQPALQSSQPTFESLESCRQALESSRPALELSESCRQALDPRQPLESNQSELDTLESCRKAFDPRQQQLESIQPALGPCRQPLKPSQPPFKVNHETLQSVRQFDEESFQRTFTSSGHLLEISQQSLEISQQPLEISQQPLYTIHEFSEISQETLDTSLQFLQTFCQQPLEATQNILETNQQPLETSQQPLETNQQPLETSQQALDTIHEFLEINQETLDTSLQLLQTNQQTLDNTQQPLDTSHHIFETNQQPLDTSHHILETNQQPLDTCHHILETNQQPLDTSHHILETNQQPLVTSHHIFETNQQPLDTSHHILETNQQPLVTSHHIFETNQQPLDTSHHILETNQQPLDTSHHIFETNQQPLDTSHHILETNQQPLDTSHHILETNQQPLDTSHNILETNQQPLDTSHNILETNQQPLVTSHHIFETNQQPLDTSHHILETNQQPLDTSHHILETNQQPLDTSHNILETNQQHLESQQPSESSRQPSKTSQQISEEMELDPLTSKSFDSDKPYQCPICHYKFVKASLLRRHQLTHTKTKPFKCSMCKYECARLDYLKKHFIRKHSDRTFMCNDCDYSTTNKKEMVKHTKCHLDRRIFKCKLCDYTCYKNVTLKYHMLGHAGEKPYACKYCDFKCIRPTTMKSHEDTHTKQKIYSCRHCDYTTIRLDSLRKHEYIHKVKPLSCDICDFKTVNIKDLRQHLHKHTGQKPYACDQCSFKTASSYNLKTHKRLHSGEKPYKCELCDNSYTRADTLKKHMDSHADDKRFKCDVCDYKCTQKAMLQRHRRKHTGEKFQCDLCDFKCFNQSYLKKHKSKKHCL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-