Egri000150.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr30:6542570-6553413[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.2 1.3e+02 3.4 0.3 1 14 250 263 250 272 0.84 2 12 0.012 0.68 10.5 2.6 2 23 280 301 279 301 0.94 3 12 0.0042 0.24 12.0 0.3 1 23 307 330 307 330 0.97 4 12 4.4e-05 0.0025 18.2 1.2 1 23 336 358 336 358 0.98 5 12 0.00065 0.036 14.5 1.6 1 23 363 386 363 386 0.97 6 12 7.2 4.1e+02 1.8 0.3 1 13 392 404 392 406 0.88 7 12 6.9 3.9e+02 1.9 0.2 1 14 613 626 613 627 0.92 8 12 0.00049 0.028 14.9 1.8 2 23 643 664 642 664 0.96 9 12 0.0049 0.28 11.8 0.3 1 23 670 693 670 693 0.97 10 12 3.1e-05 0.0017 18.7 0.6 1 23 699 721 699 721 0.98 11 12 0.00031 0.018 15.5 2.3 1 23 726 749 726 749 0.97 12 12 0.0084 0.47 11.0 1.4 1 23 755 778 755 778 0.95
Sequence Information
- Coding Sequence
- ATGGAGATGAATGCGAGCTCGAAAAACTTAGATTCCGAAAGCAGAGGACAGCCTATCAAGAAGGAACCAGTGCAAATCATCGTAACCCCACAAAAATGTCGAGTATGTCTGAATGAAGGTAAAATACCAATATTCAGCAAAACGAACCTAGAATACCCACTGTCACATTATTTGATAATAATCTGTGACGTTGATGCAACTGTGAATGATTCGTATCCACAAAACTTGTGCAGAAAATGCTATGATGTCCTCGATTCAGCGATTAAATTGAGAAAAACAGCTAAACATACACAGACACTATTGAACGCAGcacgaaaaaaacaaaatgtcaatCAACCGAATCAAAGCCAGTTCAGTTTTCAAAATTCTATCGAAcaaataaaatgtgaaccagAGCTACCAACATTTGAGGCATCATTGGAAGAGgaaaaagtgaaaaaagaaagTGAACAGTGGAAAGATACACCGTCATCGTCACAAGACGTATACAACAGTTCACTCGATGAATACACATCTATACCATCTCCATTCCAGTCAGACGTTTCTGAAAAGGCATTCACTAATGTAaggaagacaaaaaaaaataagaacccACCTATAAAGAAAAAGCAGatcaaatataattattcaCAATTAGACGACAAGAGTATACCCCCACTGACATTAGAACGAATagagaaatttaaaaaagagaAACTATTACTAGCTGTCTATTATAAAAAGACTATGATAGGTGAAGCGGTACGGTACCAATGTCGTTTGtgcaaaaacatttataaacgaCAATCGACAAGCGAACATCTATTATCACATCTCCCAGACTCGGTATCTCTTTTGATGTGTGAAATTTGTGGGAAAACATTTAAGAAGGTGTGTGTATTTGAGAGCCACAAGACTACACATGGGAATTCAGTGCCGTTTGAATGTAAACTATGTCCGTACAAAGGACGAACAAAAGGTGGCTTACTTGTTCATACCAAACGAATACATATAAAGGATTATAAGTATGCTTGTACGATTTGTCCGAAGAAATTCTTAGGTGCAAGTAATCTACAACACCATTTACGAAGACACAGTGAACCCAAGTTTCAGTGCGAAACGTGTAATAGATTATTCTATGAGAAGCATATGTTAAAAGCTCACATCATCCGGGCTCACACATCAACTGAACCACACCGGTGTGGATTGTGCGGCAATGAATATAAAACCAGGAAAGGTAAAATACCAATATTCAGCAAAACGAATCCTGATTTCCCATTGTCTCACTATTTGATAATAATCTGTGATATTGACGTAGCCGCAAATGATCGGTTTCCACAAAACCTGTGTAAAAAATGCTTTGATATTCTCGATTCCGCTATAAAATTGAGGAAAACTGCTAAACATACACAGACACTTTTAAATGCTGCTCGGAAAAGGCAAAACCTTAATCAAACCCAATTTAACTATCAAAATCCTATCGAACAAATCAAATGTGAACCCGAGCTAACGACGTTTGTACCAACCTTGAAAGAGGAGAAGACACAAAAAGAAAATGAGGTTTGGAAAGACAAACCGTCATCATCACAAGAAGTATACAATAGTTCACTTAACGAATACACGTCTATACCATCTCCATTCCTCGCAGACATTCGTGATAAAGGCTACGGCAATGTAAGGAAGATAAAGAAAGTAAAAAAGCCACttataaagaaaaaacagatcaaatataattattcaCAACTAGATGATAAAAATTTGCCACCATTAACATTGGAACGCATAGAACATTTCAAGAAAGAGAAACTATTGTTAGCAGTGTATTATAGAAAGATTATGGTCGGTGAAGCAGTGAGACATCAATGTCGtttatgcaaaaatatttataaacggCAGTCAGCTGGCGAGCATCTTTTGTCGCATATCCCTGGTTCTATATCTCTGTTGATGTGTGAAATTTGCGGAAAAACCTTTAAGAAGGCATGTGTCCTTGAAAGTCACAAAACCACCCACGAAAATTCAGTCCCGTTCGAATGTAAACTTTGTCCTTATAAAGGTCGCACGAAGGGCGGATTACTAATACACACAAAAAGAATACATATAAAGGATTATAAATACGCTTGCACGATTTGCCCCAAGAAATTTTTAGGTTCTAGTAACCTTCAGAGTCATTTACGAAGACACAGTGAACCTAAATTTCAGTGTGAAACCTGTCAAAGATTCTTTTATGAAAAACATATGCTTAAAGCACATATTATCAGAGCTCATACTTCAACAGACCCTCATCGGTGTAGCTTGTGCGGCAATGAATATAAAACCAGAAGAGGTTTATTGAAACATGAGATCAAAGTACATAAGAGAAAGCAAATTTACAACAATCGAGCCTTTTATCTTAAACTAGCAAGAGAAAACGAAGAAAGTGAAGATAAATGA
- Protein Sequence
- MEMNASSKNLDSESRGQPIKKEPVQIIVTPQKCRVCLNEGKIPIFSKTNLEYPLSHYLIIICDVDATVNDSYPQNLCRKCYDVLDSAIKLRKTAKHTQTLLNAARKKQNVNQPNQSQFSFQNSIEQIKCEPELPTFEASLEEEKVKKESEQWKDTPSSSQDVYNSSLDEYTSIPSPFQSDVSEKAFTNVRKTKKNKNPPIKKKQIKYNYSQLDDKSIPPLTLERIEKFKKEKLLLAVYYKKTMIGEAVRYQCRLCKNIYKRQSTSEHLLSHLPDSVSLLMCEICGKTFKKVCVFESHKTTHGNSVPFECKLCPYKGRTKGGLLVHTKRIHIKDYKYACTICPKKFLGASNLQHHLRRHSEPKFQCETCNRLFYEKHMLKAHIIRAHTSTEPHRCGLCGNEYKTRKGKIPIFSKTNPDFPLSHYLIIICDIDVAANDRFPQNLCKKCFDILDSAIKLRKTAKHTQTLLNAARKRQNLNQTQFNYQNPIEQIKCEPELTTFVPTLKEEKTQKENEVWKDKPSSSQEVYNSSLNEYTSIPSPFLADIRDKGYGNVRKIKKVKKPLIKKKQIKYNYSQLDDKNLPPLTLERIEHFKKEKLLLAVYYRKIMVGEAVRHQCRLCKNIYKRQSAGEHLLSHIPGSISLLMCEICGKTFKKACVLESHKTTHENSVPFECKLCPYKGRTKGGLLIHTKRIHIKDYKYACTICPKKFLGSSNLQSHLRRHSEPKFQCETCQRFFYEKHMLKAHIIRAHTSTDPHRCSLCGNEYKTRRGLLKHEIKVHKRKQIYNNRAFYLKLARENEESEDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -