Egri005749.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr29:4061209-4089996[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.18 10 6.8 4.1 1 23 469 492 469 492 0.95 2 10 0.0037 0.21 12.2 2.4 1 23 498 520 498 520 0.91 3 10 0.12 6.5 7.5 0.7 1 23 524 546 524 546 0.97 4 10 0.00049 0.028 14.9 0.1 1 23 551 574 551 574 0.97 5 10 0.018 1 10.0 0.1 1 23 578 601 578 601 0.96 6 10 0.027 1.5 9.4 0.2 2 23 614 636 613 636 0.94 7 10 0.0081 0.45 11.1 3.1 1 23 752 774 752 774 0.94 8 10 1.3e-05 0.00071 19.9 2.4 1 23 780 802 780 802 0.97 9 10 6.7e-05 0.0038 17.6 1.4 2 23 808 829 808 829 0.97 10 10 0.00017 0.0097 16.4 0.6 1 23 835 858 835 858 0.96
Sequence Information
- Coding Sequence
- ATGCTATCTATTTGCCAGATTTGTTTGTCTACTGATAAAAGTCTCCAAGCGTTAAAAGAGCCATTATCCAACTGGCACGATGAGCTATGCGATTTTGGAATAGAAGATTTCGCTTTATACTGTCCAGAGTGTGCATATATGCTTACTAAATTCCATAATTTCAAAGAGAAATGTCTTCTAGCGAACAAAATACTGAAGAAATGGAAAAAGCAAAGCCAAAAagTCCGAATACATGCCAGCCAGCTAAAAAAAGAAATGCCGCCACCTCCACTTGCCCTCAGCAATGTAAATAAtcacaaaatattctactatcaaTCACTTGAGGATCAATATTTTACAGAATTAAGAAGTccaaatatttatactataaaaaatagtgGCTTTATAATAGATACAAATTGGGCAGTAGACTCAGAAAAGTTTCCCTCCAATCCAGAAATATCAACGCCTAATGGCCTAGAATCTGATGTTAACATATTAAGTTCTGATAATGACATTTTAAGATCTAATGATATGTTAAGTTTTAATAATGATATGCTAAGATCTGGTAACATACAACCCGATGAAGATACATTGTCAAATGTTAAATATCTTAAAGAAATCACGGAAGATCATCCAGATAACGCAAATATACTAAACATAGATGAAAGCGGTAGTTTAAAAACGATTTTAATAGAACCGTGCaatgaaaatgagtttttaaaAGAATCAGATATGAAAGTTGAAACTGACGTTTTAAATACAGATGCTATCACTGAAGATATTAAtgttaaaagtgattttggtagTGATATTTATATGAGTGATCATAACATCAGTGATAGTGATAGTGATTTTGAGAAGATGTTGAAGGAAACATATGATTCTAACAATTCGAGCGATGATGAAACGTTATTTAAGAAACGGAAAAGATCACTCAAAGCTGATTGTGACttaaaaaaggttaaaaaaaagattaaaacagTCGACAAAGAAGAAACAACCGACACACcatggaataaaataaaaaagataaaagaaaaagatgccaaatcaaaaaaaattagaagAACAACGCCACTAAAAGATTCTctcaagaaaataaatttagattcgATCAAATATAATCTTCTATGTAAATTTGGGAATAAAGAATTGAAAGATGTAGATGGCAATGTTATAGACAAAGATTGTATCATAGATAGTTTGGataagttacataaatatacattgaACAAAGTTAAAAGGCATTGCTTAGGATCAAAACCGTTCACTCCAGAAGCTATCCAAGTATTAAGCCAGATCCAGAAACGCTACGGCAACCAATTCTCAAGTGTGTTTACGATGGAGCACCTGACCACCACCGAGCAAATGATTGAGGAATTCAACAAGCGACAACAGCATGAGTCCTTCTTGAACTCTGAGCATCGCTGTATGATGTGCTTACGGGGATTCAAGCATAGCAAGTTGCTTGATTACCATATGCTCGAGTATCACAATCCCGAACGGCCCCACGAATGTCCCATATGTCATATGAGGTTCAAGGGACCGCCGAGCTTGTGCAAACATAACGCTGCCCACCGCTCCGTTTACAAGTGCAAGCTTTGTCCCCTTGTCACTAACTACAGGACGGTAATGGAGAACCACTACAATCTGCATAATGGTGTGAAGTATACTTGTAGTCTGTGTGATGCAGTATTAAACAGTAAGACGTCTCTGAACGCGCACATCAACTACGTGCACCCGTCGCGGTACGTGTGCGCGCTGTGCGCGAGGACCTTCGTCTCGGAGGTCGGCCTGATGCAGCACAAGATACGGAAACACCAGaaccaAGAAATGATCGAAGGTCCTGACAACAAACGCTGTGAAACGTGCGACATTACCTTCATATCCGAGTCCGTGTACGAGAGTCACGTGGCCAAGTCGCACGCGGAGAAATGTACCGCGGAGAATTACGCCGTCACCTACAGGAAGCGGAAGATGTCCGGGAAGCGGCAAACGCCCAACTTCGTCTGTCGCGTCAGACATTACCTTCATATCGAATCCGTGTACGAGAGACACGTGGCCAAGTCGCACGCGGAGAAATGTACCGCGGAGAATTACGCTGTCACCTACAGGAAGCGGAAGATGTCCGGGAAGCGGCAGACGCCCAACTTCGTCTGTCGCGTCTGTAAGCGAGTGGAGCACAGCATGGGCCGAATGGTGTGGCACTTCAAACAAGAGCATCCGCGCGAGAACACCGACTCGGTGTCCATGTGCGCGCAGCCGTACAAGTACCTGTGCCATGAGTGCGGGAAAGGATACTCGaatataaccgacttcaacgaACACAAGCACCTGCACACGGGGGCGAAGCCCTACGCTTGCGACAAGTGCCCGAAGGCGTTCCACCGCAAGACCAACCTCCGGAGCCACCTCGAGAGGCACTTCCCTCCGACGAGGGAGTGCCAACACTGCGGGAAGAAGTTCCTCAGCGCTGCCAACCTGAACAACCATGTTAGGATGCATATCGGCATTAGACGTTATACGTGCGAGCTTTGCTCAAAAACCTTCCTCCACCAAAGCGCTCTCAACGCGCACGTCAGAGGCGTACACCTGAGAATACGACGTACTAGGAAACCTAATAAAGAGCCTACAgaataa
- Protein Sequence
- MLSICQICLSTDKSLQALKEPLSNWHDELCDFGIEDFALYCPECAYMLTKFHNFKEKCLLANKILKKWKKQSQKVRIHASQLKKEMPPPPLALSNVNNHKIFYYQSLEDQYFTELRSPNIYTIKNSGFIIDTNWAVDSEKFPSNPEISTPNGLESDVNILSSDNDILRSNDMLSFNNDMLRSGNIQPDEDTLSNVKYLKEITEDHPDNANILNIDESGSLKTILIEPCNENEFLKESDMKVETDVLNTDAITEDINVKSDFGSDIYMSDHNISDSDSDFEKMLKETYDSNNSSDDETLFKKRKRSLKADCDLKKVKKKIKTVDKEETTDTPWNKIKKIKEKDAKSKKIRRTTPLKDSLKKINLDSIKYNLLCKFGNKELKDVDGNVIDKDCIIDSLDKLHKYTLNKVKRHCLGSKPFTPEAIQVLSQIQKRYGNQFSSVFTMEHLTTTEQMIEEFNKRQQHESFLNSEHRCMMCLRGFKHSKLLDYHMLEYHNPERPHECPICHMRFKGPPSLCKHNAAHRSVYKCKLCPLVTNYRTVMENHYNLHNGVKYTCSLCDAVLNSKTSLNAHINYVHPSRYVCALCARTFVSEVGLMQHKIRKHQNQEMIEGPDNKRCETCDITFISESVYESHVAKSHAEKCTAENYAVTYRKRKMSGKRQTPNFVCRVRHYLHIESVYERHVAKSHAEKCTAENYAVTYRKRKMSGKRQTPNFVCRVCKRVEHSMGRMVWHFKQEHPRENTDSVSMCAQPYKYLCHECGKGYSNITDFNEHKHLHTGAKPYACDKCPKAFHRKTNLRSHLERHFPPTRECQHCGKKFLSAANLNNHVRMHIGIRRYTCELCSKTFLHQSALNAHVRGVHLRIRRTRKPNKEPTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -