Egri005988.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr29:5260754-5296035[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0055 0.31 11.6 0.8 1 23 274 296 274 296 0.96 2 9 1.8e-05 0.001 19.4 4.4 1 23 328 351 328 351 0.97 3 9 0.0043 0.24 12.0 1.0 2 21 356 375 356 376 0.92 4 9 0.00014 0.0081 16.6 0.5 2 23 392 413 391 413 0.94 5 9 0.00015 0.0086 16.5 0.6 1 23 418 440 418 440 0.98 6 9 0.00012 0.0068 16.8 4.3 1 21 449 469 449 474 0.94 7 9 0.00035 0.02 15.4 1.7 1 23 482 505 482 505 0.92 8 9 0.0034 0.19 12.3 0.2 1 23 511 534 511 534 0.95 9 9 0.03 1.7 9.3 0.5 3 19 547 563 545 564 0.89
Sequence Information
- Coding Sequence
- ATGAAGGAAATCAACATAAATATCGAGGGTTACAATGTGAACGGCATATGTGTCGGTTGTTTGCACTATAATCGTAAAATGTTCTACGACGATGATGTGAAAGAATGTCTTAAAAGAATTGGTGATATTGAAATTCCAGAAGAACTGTCCGTGCAGTTATGCTGGGAGTGTTTAGCGgtggtaaaaaaaattaaaaagttccaAGAAAAGATACTGAGGTCCTACAACATACTAATAGAGTATTCACATAAGCACACATACCTCTATTCCCCTGAAGAACTAACACAGCATGCCTCCACGGATCTGGGAACTACAGAGGTACAACACAAATGTCTGTATGTCTCGGACACAGACACCACTAAAGAGGAGGTAAAGGAAGAGCATGAGGCTTTCACAGAGCTCAATGTGGAATTTGATTCAGTGAAAGACGAGCGTGACTTAGACGACAGTCAGTTTTCTGAGGATTTCCCTTCGCAAGAGTTTGAGGACGGTCAGAAATATGAAACGAAAACACAGTACGAATCTGACGAAGATATACATCTCTCTGAGCTGAAAAGGAAAAAGGAAAGAAAGGGAAAAAGAAAGAAAGCGAAgATCAAAGAGCCGAAACTGCCCCGTAAACTGAAGAATCTACCATCTAGCATTGTCGAACTCCAAACCATGACTGAAGAAGAAATGTGGAGCATTAGAAGCGAGGACGTCATCAGCGAAGCTTTCCAGAGGATACGGTACAAGTGCGAAGATTGCATCATAGGATTTAACACGGAGAAACTTAGAGACTACCACTTCAATAAGAAGCATAAAGCTAAAGGCAACAAATATCAATGCGACGTTTGCAAAGCGTATTTCCTGAACAAGGATAATCTGACGAGCCACCGCGACTTGCACTTGGCCGCGTACCGGTGCACTCAGTGCGCGCTTACCACCACACTGAAGAAGAGAGTGGTGCAACACGAATGCGCTACGAAGATCTACCACGAATATAAGTGCGCGGACTGCGATAAAACTTTCAGTTCTAAATCCAAACTGTCGTATCACAAAAACGTGTGCCATCAAGAAAAGCCTCAGTGCGACTGCTGTGGAAAAGTGTTTGCCAACAAAATGACGCTGAAATATCATCTCAAaatcTACCCACAAAATAAAGACGACAAACcaaaagagaagaaatatattCCATGCAAGGGTTGCGATAAAGTGTTTCACTCCCAGAAGAGCTACCGAgcacatgtcGTCATCCACGACGGTCTCACCTACCCCTGTCCGATATGCGGCAAGCTGTTCCAATGGAAGCGCAATCTTTCCCGGCACACGCGAAACCACCGCGAGCGGGAGGCGGGCACGGCGCACGAGTGCAGGGAGTGCGGCAAGACGTTCGCGTCGCGGGACTGCTACAACAACCACATGCGGCTCAGCAAGCGGCACGCCGCGCCCTCCAACTACGGacacGAATGTAACTATTGTGGGAAAAAGTTCCCGACAAAGTGGTGCATGGTCGATCACATCGACTGGGAACACTTGAAGAGGGTCAAATACGAATGCAGTGTGTGTTTCAAGGCGTTTAAAACTGCTAAAATAATGGTAGCGCACATGAACAACATACATGAGGGCAAGAAGAGAGAAGCGGAGGGCGAGCACTTGTGCGACGTCTGCGGGAAATCTTATAAGacGGTGAAGCGGCTGAAGGGTCACGTGTGGGCGATGCACACGCAGCGCTCGGGCACCAAAAGCTTCAAATGCAAGTTGTGCGCGGCGACCTTCCTCTGGCAGACCTCCATATACAAGCATGTGCGGATGATGCACAGTACTAGAGCTAAGCCAGCTAGACCCATACCAGCGAAGAAGCAAGACCCTTACCCCGAAATGGATATTCTCCAAGACAGAATGTACTTCCAAAATGTGGCTTCGGTCACAAACGGTGCCATGCCAATGTCGCACCCGGTCATAGCCAACGGACTTTAA
- Protein Sequence
- MKEININIEGYNVNGICVGCLHYNRKMFYDDDVKECLKRIGDIEIPEELSVQLCWECLAVVKKIKKFQEKILRSYNILIEYSHKHTYLYSPEELTQHASTDLGTTEVQHKCLYVSDTDTTKEEVKEEHEAFTELNVEFDSVKDERDLDDSQFSEDFPSQEFEDGQKYETKTQYESDEDIHLSELKRKKERKGKRKKAKIKEPKLPRKLKNLPSSIVELQTMTEEEMWSIRSEDVISEAFQRIRYKCEDCIIGFNTEKLRDYHFNKKHKAKGNKYQCDVCKAYFLNKDNLTSHRDLHLAAYRCTQCALTTTLKKRVVQHECATKIYHEYKCADCDKTFSSKSKLSYHKNVCHQEKPQCDCCGKVFANKMTLKYHLKIYPQNKDDKPKEKKYIPCKGCDKVFHSQKSYRAHVVIHDGLTYPCPICGKLFQWKRNLSRHTRNHREREAGTAHECRECGKTFASRDCYNNHMRLSKRHAAPSNYGHECNYCGKKFPTKWCMVDHIDWEHLKRVKYECSVCFKAFKTAKIMVAHMNNIHEGKKREAEGEHLCDVCGKSYKTVKRLKGHVWAMHTQRSGTKSFKCKLCAATFLWQTSIYKHVRMMHSTRAKPARPIPAKKQDPYPEMDILQDRMYFQNVASVTNGAMPMSHPVIANGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00034168;
- 90% Identity
- -
- 80% Identity
- -