Basic Information

Insect: Ectropis grisescens
Gene Symbol: NINAA
Assembly: GCA_017562165.1
Location: chr04:16412451-16421308[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.8 2.1e+02 2.7 0.1 1 21 14 34 14 35 0.90

2 10 6.7e-06 0.00038 20.8 0.6 2 23 86 107 85 107 0.97

3 10 1.7e-06 9.7e-05 22.6 4.5 1 23 112 134 112 134 0.97

4 10 0.0022 0.12 12.9 4.9 1 23 156 178 156 178 0.98

5 10 0.0055 0.31 11.6 0.1 1 22 214 235 214 235 0.95

6 10 0.00016 0.0092 16.4 0.3 1 23 242 266 242 266 0.93

7 10 0.12 6.6 7.4 2.7 3 23 270 290 268 290 0.93

8 10 0.0011 0.064 13.8 4.8 1 23 296 318 296 318 0.99

9 10 2.4e-05 0.0014 19.0 3.0 1 21 323 343 323 344 0.96

10 10 0.00018 0.01 16.3 1.9 1 23 350 377 350 377 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.8	2.1e+02	2.7	0.1	1	21	14	34	14	35	0.90
2	10	6.7e-06	0.00038	20.8	0.6	2	23	86	107	85	107	0.97
3	10	1.7e-06	9.7e-05	22.6	4.5	1	23	112	134	112	134	0.97
4	10	0.0022	0.12	12.9	4.9	1	23	156	178	156	178	0.98
5	10	0.0055	0.31	11.6	0.1	1	22	214	235	214	235	0.95
6	10	0.00016	0.0092	16.4	0.3	1	23	242	266	242	266	0.93
7	10	0.12	6.6	7.4	2.7	3	23	270	290	268	290	0.93
8	10	0.0011	0.064	13.8	4.8	1	23	296	318	296	318	0.99
9	10	2.4e-05	0.0014	19.0	3.0	1	21	323	343	323	344	0.96
10	10	0.00018	0.01	16.3	1.9	1	23	350	377	350	377	0.97

Sequence Information

Coding Sequence: ATGGCTCACGTTTTTGTTTTAGATTCTCTGAATGATATGTTTGTGTGCGGGTTGTGTAAATCTGTTTACAATTCTCTAGAAGTTTTCCTTGAACATAAGAGGTCACAATGTACTCCAGAAGTAGCTGGGAATGTTTTAGCTATTTCTGTGTCTTCAGAAGTCTCTGCAGAAAGTACAAGTGCAAGTAATTTTGATCCTAATTTGCACCACGATAATTGTGGTATGACAGAATGTGAAACATCAATTATCAATGTTCCTTGTCCTGTTTGTGGCAAATccttcaaaaatacaaaaactcaGAAGATACACATGAAATCTCATGAATATAAACCATACCAGTGTCTGGTTTGTGGAAGGTGTTTTAACCAAAATTCACATCTTCAAAGACATTATTTGGCACATAAGGTTTGGCCAGAGAGTCTCAGTGAGACAACAGCTAAATCATCGGAAACAGAACTTTTGAGTTATACATGCCCTTATTGCAAGCATGTTCTATCAAATTATCACTTGTTCAGAgctcatttaaaaaatcatcagtctgtgaaaaaatttaaatgtattcaaGGTgactgtatttatttttttgaaactgTAGAAAGTTTATTAGAGCATGTGTCTTCTGCACATATACCATCAGTGTACTCCTGTTACATTTGTGAGGAGTCATTTAACTCTTTAGAAAGCATAGCGGCACATCAAAAGAAGATACAGAAGGGGAAACAATACAAATGCTTGCAATGTGATGCTGTATTCAAGAAGCCAGAAAAGCTATCTCTCCACATGTTAACAGAGAATCACAAAAAGACTTGCATTCACTGTAACAGGACATTTGCTAGCGACAAAAGATTACGTCTTCATTTACAGATACATAGAAAAGTTAAACCATATCAATGTACAATTTGTAGCAGCAGCTTTcatatgaagaaatatttaaccAATCACATGTTGAAACATGGCAGAAAAGAATTTAGATGTACCATTTGTAAGAACACTTTTAAGAGACATGATTTGCTCAAAAGACACATGAAATTGCAAAGCAGTAAATTGTTTCAATGTCCTTTTAAAGAAACTTTGAACTGTAAAAGAGAATTTACTCGAAGAGATAAACTGAAGCTACATGTGAAAACTCACACCAAAGTGGAACAATCTTCTGCGCGTCAATTCCGTGTCACAGATCAAGTCTACTTTGACATACTCAGAGATGACAAGCCGTTAGGCAGGGTAGTGATCGGGCTGTTTGGCGATCTGGCGCCAAAGGCTGTGAAGAACTTCAAGGCCCTAGCTACGAAAGGAATCAATGGGAAATCATATAAAGGAACTTCAGTTAATCGTATTATCAAAAGGTTTATGGTTCAAGCTGGAGATGTGGTCTCTGATGATGGCACAGGGTCAATCAGTATTTATGGAGATACTTTTGAGGATGAGAACTTGGATACTCAACACAGTGGTGCAGGATTTGTCTCAATGGCAAATAAAGGAAGTAACACTAATGGCTGCCAATTCCTGATTACACTTACTGGAACTCCATGGCTGGACAATTTGCATACTGTTATTGGGAAGGTGGTGGAAGGTCAGAGCGTAGTCCACATGGTGGAGCACACGGCCACCGATGTCGACGACCGTCCGACGGTGCGCGTGCACATCGAAGACAGCGGTCTCGTGCCCACGCCTGCGCCGTTCTACATCTCCGATGACCCTTACGACCTGTGGGCGTGGATCAAGGCGTCAGCAGTTCCACTCTCCATGTCGTTCTCCATCCTCGGCTTCTTCCACTGGATGATGGGCAAACTGGAAATAtcttaa
Protein Sequence: MAHVFVLDSLNDMFVCGLCKSVYNSLEVFLEHKRSQCTPEVAGNVLAISVSSEVSAESTSASNFDPNLHHDNCGMTECETSIINVPCPVCGKSFKNTKTQKIHMKSHEYKPYQCLVCGRCFNQNSHLQRHYLAHKVWPESLSETTAKSSETELLSYTCPYCKHVLSNYHLFRAHLKNHQSVKKFKCIQGDCIYFFETVESLLEHVSSAHIPSVYSCYICEESFNSLESIAAHQKKIQKGKQYKCLQCDAVFKKPEKLSLHMLTENHKKTCIHCNRTFASDKRLRLHLQIHRKVKPYQCTICSSSFHMKKYLTNHMLKHGRKEFRCTICKNTFKRHDLLKRHMKLQSSKLFQCPFKETLNCKREFTRRDKLKLHVKTHTKVEQSSARQFRVTDQVYFDILRDDKPLGRVVIGLFGDLAPKAVKNFKALATKGINGKSYKGTSVNRIIKRFMVQAGDVVSDDGTGSISIYGDTFEDENLDTQHSGAGFVSMANKGSNTNGCQFLITLTGTPWLDNLHTVIGKVVEGQSVVHMVEHTATDVDDRPTVRVHIEDSGLVPTPAPFYISDDPYDLWAWIKASAVPLSMSFSILGFFHWMMGKLEIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -