Egri011050.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr18:26068171-26072563[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.059 3.3 8.4 4.7 2 23 144 165 143 165 0.97 2 13 8.6e-06 0.00048 20.5 4.2 1 23 171 193 171 193 0.98 3 13 0.075 4.2 8.0 0.0 2 23 215 236 214 236 0.97 4 13 0.04 2.2 8.9 3.9 1 20 242 261 242 265 0.95 5 13 7.3e-05 0.0041 17.5 0.9 1 23 274 296 274 296 0.98 6 13 0.0001 0.0057 17.1 1.1 1 23 302 324 302 324 0.98 7 13 3.4e-05 0.0019 18.6 0.1 1 23 330 352 330 352 0.95 8 13 0.0045 0.25 11.9 0.3 1 23 358 380 358 380 0.94 9 13 0.0013 0.072 13.6 0.1 2 23 389 411 388 411 0.94 10 13 1.8 99 3.7 0.1 2 10 417 425 417 435 0.87 11 13 0.076 4.3 8.0 0.6 1 20 441 460 441 464 0.89 12 13 5.4 3.1e+02 2.2 0.1 6 23 477 495 470 495 0.81 13 13 0.002 0.11 13.0 1.6 1 23 501 523 501 524 0.94
Sequence Information
- Coding Sequence
- ATGCAGTACTGTGCGAAGATGATGAAGTGTGCACGAGTAGAGGTCGTGAAAGGCGATGGCTTGCCGGACTCGATCTGCGAGCGCTGCGCCGCCGACCTCGGCGCGAGCTACGAGTTCGCGGTGCGATGCGAGGCCGCCGACCGCGCGCTGCGGGCGGCcggcgcgcccgcgccgccgcccggcaTCGAACAAAAGGCCGAGACTATCAAAGAAGAAGTCAAATCGGAAAACTACCATGCCGACGGATTCGAGTTCGAAACCCACATTGATGATTTTACCACCTTCGTAGACACTGATGATGTACAAAATAccataaaaaagaagaaaaagcaCAAAACGAAAGAGAAAAAAACCGGAAAAAACGGACACAAAAAAGTTTTACCGAATCACCTGCGGAAGAGAAAGTTGAGGGTCAAAACTGGCCCCATCCAGTGCCAGTTCTGCGACCGAACGCTCACCTGCCACTCGGCGTTCGAGCTGCACATGAGGACCCACACCAAGGAAAAGCCGTTCACTTGCGACATCTGCAAGAAGACATTTACTTCGAAACATACCATGAAAATACACATACTGAGGCATTACGGGGTGAAACAAGATAGAGAGAGAAGTGAAGGCTGGAAGCGAGCGAAGAGGGAGGCGCTGCAGTGCGCGCGGTGCGGGCGGCTGGCGGCGAGTCGCTCCGCCATGGAGGAGCATGCGCGCACGCACACCGGGGAGAAGCCCTACGCGTGCGAGCGCTGCGGGAACAAGTACCGGCTGAAGGGCACGCTGACGCGGCACATGCACTGCCAGCACCCCGACTCGCACCCCGGCGCCACGTACGTCTGCGAGCACTGCGGCAAGCTGTTCCGCGCACGAAACAACATCATCACGCACCTGCGGGTGCACACGGGGGCCAAGCCGTATCGCTGTCCGTTCTGCTCGGAGGCGTTCCGGCAGATCTCTTCTATGTTGCGGCACAAAAGGTTGCACACGGGTGAGAAGCCGTTCAGCTGCGCGGTGTGCTCGCGCGCCTTCCGCGACCGCAGCGCGCTCCGCAAGCACGGCGCCGTCCACAGCGCGGAGCGGCGGTTCGCGTGCGCCGCCTGCGGCAAGCGGCTCAAGAGCCGCGAGAGCCTGCGCATCCACTCGCTGCGCCACAGCGACGGCGGGAACAAGCGCTGGGTCTGCAGCTTCTGCGGCCTGAGGGTCGCCTCCAAAGGAAACCTCAAGGTTCACACTGAGAGGATGCATTCCGAAAGGTCTGGCACGTGCCCCGTGTGCCACAAGTCGGTCCCGGACGTGGCCGCGCACGCGCGCGCGCACGGCGGCGAGCGGCCGCACGCGTGCGCGCAGTGCGCGCGCGCGTTCGCGTCGGCGCGCAGCCTGGCGCACCACGTGGGGTTCAAGCACAGGAACGCGGGCCGCTTCCAGTGCGCGCTCGCGCCCTGCAACCTTTCGTTCCCGACGGCGGCCATGTTGGAGTTCCACGTGCTGAAGACGCACACGCGGCGCGCGCCGCACGCGTGCCCGCTCTGCGCGCGCGCCTTCCTGCGCGCCTCCGACCTGTCGCGCCACCGCCGGCTGCACCACGGGGCGCCCGGCCTCGCGCTCCCGGCTCACGCCGCGCCGCCCGTCCCCGACTCATAG
- Protein Sequence
- MQYCAKMMKCARVEVVKGDGLPDSICERCAADLGASYEFAVRCEAADRALRAAGAPAPPPGIEQKAETIKEEVKSENYHADGFEFETHIDDFTTFVDTDDVQNTIKKKKKHKTKEKKTGKNGHKKVLPNHLRKRKLRVKTGPIQCQFCDRTLTCHSAFELHMRTHTKEKPFTCDICKKTFTSKHTMKIHILRHYGVKQDRERSEGWKRAKREALQCARCGRLAASRSAMEEHARTHTGEKPYACERCGNKYRLKGTLTRHMHCQHPDSHPGATYVCEHCGKLFRARNNIITHLRVHTGAKPYRCPFCSEAFRQISSMLRHKRLHTGEKPFSCAVCSRAFRDRSALRKHGAVHSAERRFACAACGKRLKSRESLRIHSLRHSDGGNKRWVCSFCGLRVASKGNLKVHTERMHSERSGTCPVCHKSVPDVAAHARAHGGERPHACAQCARAFASARSLAHHVGFKHRNAGRFQCALAPCNLSFPTAAMLEFHVLKTHTRRAPHACPLCARAFLRASDLSRHRRLHHGAPGLALPAHAAPPVPDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634761;
- 90% Identity
- -
- 80% Identity
- -