Basic Information

Insect: Ectropis grisescens
Gene Symbol: -
Assembly: GCA_017562165.1
Location: chr24:9025740-9028265[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00037 0.021 15.3 2.2 1 23 43 65 43 65 0.98

2 10 7.3e-05 0.0041 17.5 1.0 1 23 71 93 71 93 0.98

3 10 0.0002 0.011 16.1 2.8 1 23 99 121 99 121 0.97

4 10 0.00013 0.0073 16.7 1.8 1 23 127 149 127 149 0.98

5 10 4.1e-05 0.0023 18.3 1.2 2 23 156 177 155 177 0.97

6 10 0.00017 0.0094 16.4 3.7 1 23 183 205 183 205 0.98

7 10 0.022 1.3 9.7 1.0 2 23 212 233 211 233 0.93

8 10 7.4e-05 0.0042 17.5 0.6 1 23 239 261 239 261 0.98

9 10 0.00036 0.02 15.3 2.7 2 23 268 289 267 289 0.98

10 10 0.0024 0.13 12.8 2.7 1 23 296 318 296 318 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00037	0.021	15.3	2.2	1	23	43	65	43	65	0.98
2	10	7.3e-05	0.0041	17.5	1.0	1	23	71	93	71	93	0.98
3	10	0.0002	0.011	16.1	2.8	1	23	99	121	99	121	0.97
4	10	0.00013	0.0073	16.7	1.8	1	23	127	149	127	149	0.98
5	10	4.1e-05	0.0023	18.3	1.2	2	23	156	177	155	177	0.97
6	10	0.00017	0.0094	16.4	3.7	1	23	183	205	183	205	0.98
7	10	0.022	1.3	9.7	1.0	2	23	212	233	211	233	0.93
8	10	7.4e-05	0.0042	17.5	0.6	1	23	239	261	239	261	0.98
9	10	0.00036	0.02	15.3	2.7	2	23	268	289	267	289	0.98
10	10	0.0024	0.13	12.8	2.7	1	23	296	318	296	318	0.98

Sequence Information

Coding Sequence: ATGATGGAAGAACCTGACCTTATTGACTTAGATAATAGAAATACTGTACCGTTGGAAACAAACAACTTGGACACTGTGGACGAGTCAGCACCAGAACCGAGCGTATCCCAGAAAAACGTGAAGAAACATGAATGCCCAATGTGTGATTATAAATCAGTTAATTCTAACCATATAAAGTCACATATAAGAGTCCACTACGGTTTAAAACCATTTACCTGTGAGTTGTGCGACTATAAAACATCAATACCAAGTAACCTTAATCGGCATAAACTGAAACACACTGGAGAAAAATTGTACGAATGTGATATGTGCAACTACAAATTTGCACACCTAACTTCTTTAAAACAGCACAAATTATTACACACTGGAGAACGGCCATATGAATGCAGCATATGCAATTACAAGGCAGTACAAGCAAATCATCTTAAGCGCCACCTATTTACTCACACGGGCGAGAAACCTAAAGAGTGTGATTTGTGTGATTACCGAACAACAACGTCTGGAGATTTAAAACGTCACAAAATGACTCACACTCGTAAGAAACCATACAAGTGCGATCAGTGTAACTACCGAACAACACAAACAAGTAATTTGTACCgtcacaaaattaaacacagcgAAGAAAAACCACTGGAATGTGATGAGTGTGACTTCAAAACTGCGTACACAAGCACGTTGAAACAGCATAAGTTCCTACACACTGGCGAAAAACCTTTCGAATGTGATTTATGTGATTACAAAGCAGCGCAAGCAGCACATCTAAAACGTCACATATTCACGCACACAGGTGAAAAACCgaaaaaatgtgataaatgtAACTTTAGAACGGTCACTGCAAGCGATTTGAGTCGACATAAAAAGACACACACTAAAAAGAAAAAGCCTTTTAAATGTAATAGATGTGATTTTAGATCCATTCGAGCGAATCTTTTAAAGAAGCATAAACTGAAACATAGACAGGAGAGAGAGCTAGTGAAACTGATTTTATCTCAACCCGAATATCCAGTTAAAACTGAGACCTGTACAATTTATATACCCAGTGATAATACTGATCCATAA
Protein Sequence: MMEEPDLIDLDNRNTVPLETNNLDTVDESAPEPSVSQKNVKKHECPMCDYKSVNSNHIKSHIRVHYGLKPFTCELCDYKTSIPSNLNRHKLKHTGEKLYECDMCNYKFAHLTSLKQHKLLHTGERPYECSICNYKAVQANHLKRHLFTHTGEKPKECDLCDYRTTTSGDLKRHKMTHTRKKPYKCDQCNYRTTQTSNLYRHKIKHSEEKPLECDECDFKTAYTSTLKQHKFLHTGEKPFECDLCDYKAAQAAHLKRHIFTHTGEKPKKCDKCNFRTVTASDLSRHKKTHTKKKKPFKCNRCDFRSIRANLLKKHKLKHRQERELVKLILSQPEYPVKTETCTIYIPSDNTDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -