Basic Information

Insect: Ectropis grisescens
Gene Symbol: -
Assembly: GCA_017562165.1
Location: chr04:21041038-21046153[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.8e-06 0.00038 20.8 0.3 1 23 85 107 85 107 0.98

2 8 1.4e-05 0.00079 19.8 2.7 1 23 114 136 114 136 0.98

3 8 1.9e-07 1.1e-05 25.6 2.3 1 23 142 164 142 164 0.98

4 8 3.9e-05 0.0022 18.4 1.1 1 23 170 192 170 192 0.99

5 8 8.9e-07 5e-05 23.6 3.9 1 23 198 220 198 220 0.97

6 8 5.6e-05 0.0032 17.9 1.1 1 23 226 250 226 250 0.99

7 8 0.045 2.5 8.7 2.0 1 23 256 278 256 278 0.96

8 8 0.15 8.3 7.1 0.7 1 14 284 297 284 298 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.8e-06	0.00038	20.8	0.3	1	23	85	107	85	107	0.98
2	8	1.4e-05	0.00079	19.8	2.7	1	23	114	136	114	136	0.98
3	8	1.9e-07	1.1e-05	25.6	2.3	1	23	142	164	142	164	0.98
4	8	3.9e-05	0.0022	18.4	1.1	1	23	170	192	170	192	0.99
5	8	8.9e-07	5e-05	23.6	3.9	1	23	198	220	198	220	0.97
6	8	5.6e-05	0.0032	17.9	1.1	1	23	226	250	226	250	0.99
7	8	0.045	2.5	8.7	2.0	1	23	256	278	256	278	0.96
8	8	0.15	8.3	7.1	0.7	1	14	284	297	284	298	0.92

Sequence Information

Coding Sequence: ATGTCCGCTTGGGCTTGTGTTTTGCGGCGGGGTTTGAGCGGTGGTTCGCACTTCGAACGAGGAACCTCGTCGCCAGTTGCCTTCGGTCAGCACTCGGCGTGGCATTCGTCCGCCGACAGCCGGCGAGCGCGCGTCTCCAGCCGACCCACACCTCGCGGAACCTTGTGCGCAACCTACATCAACACTGACGCCATTGTACCGATCTTGACTCGATCATCATCAATCGACATGATAGGTGAGGAGGAGCGTGTCCATCAATGTGGCGAATGCGGCCTGACGCTTTCGACGCGGAGTGCGCTCACGGCTCACGCGCGCTCACACCGCGCAAATGCCGACGCTCACCGCTGCGACGTCTGCCACAAGACGTTCGCCGTGCCGGCGCGGCTGGTGCGCCACTACAGGACGCACACCGGGGAGCGGCCCTTCGAGTGCGAATACTGCCACAAAATGTTTAGCGTCAAGGAAAACCTACAGGTTCACCGTCGCATCCACACCAAAGAGCGCCCGTACAGATGCGGCGTCTGCGATGCCGCTTTCGAACATTCCGGCAAGCTGCACCGCCACGCGCGGATCCACACCGGCGAGCGGCCGCACGCGTGCCCGCACTGCCACAAGACGTTCATCCAGTCCGGGCAGCTCGTGATCCACCTCCGCACGCACACGGGGGAGAAGCCGTACCGCTGCCCGGCGCCCGGCTGCGGGAAAGGTTTCACTTGCTCCAAACAACTGAAAGTGCATTCACGGACTCACACGGGAGAGCGGCCGTACACGTGCGAAATTTGCCTTCGAGACTTCGGATACAACCATGTACTGAAACTGCACCGCACTCAGCACTTTGGCGAGCGTTGTTATCGTTGCACCGTGTGTGATGGGACTTTTAATACCAAAAAAGCAGATGGACGCTCACATATACAAGGAGCACGGGACGgagggcgcgcgcgcggcgccgccaGCCGCGAGCCCGCCGGCCGCCACGCCGCTGCCGGGTGGCGCGGTCTGCGAGCTGGTTGA
Protein Sequence: MSAWACVLRRGLSGGSHFERGTSSPVAFGQHSAWHSSADSRRARVSSRPTPRGTLCATYINTDAIVPILTRSSSIDMIGEEERVHQCGECGLTLSTRSALTAHARSHRANADAHRCDVCHKTFAVPARLVRHYRTHTGERPFECEYCHKMFSVKENLQVHRRIHTKERPYRCGVCDAAFEHSGKLHRHARIHTGERPHACPHCHKTFIQSGQLVIHLRTHTGEKPYRCPAPGCGKGFTCSKQLKVHSRTHTGERPYTCEICLRDFGYNHVLKLHRTQHFGERCYRCTVCDGTFNTKKADGRSHIQGARDGGRARGAASREPAGRHAAAGWRGLRAG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -