Egri008392.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr24:7462663-7521780[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.65 37 5.1 2.4 1 23 462 485 462 485 0.94 2 21 1.4 78 4.1 0.7 2 23 511 532 510 533 0.93 3 21 0.00067 0.038 14.5 0.6 1 23 553 575 553 575 0.98 4 21 3.4 1.9e+02 2.8 0.7 1 10 579 588 579 598 0.82 5 21 0.32 18 6.1 0.5 1 23 605 628 605 628 0.92 6 21 0.12 6.7 7.4 3.8 2 23 635 657 634 657 0.96 7 21 0.0022 0.13 12.8 0.3 1 23 664 687 664 687 0.95 8 21 0.017 0.98 10.0 0.7 1 23 738 760 738 760 0.96 9 21 0.0038 0.22 12.1 0.2 2 23 831 853 830 853 0.95 10 21 0.00053 0.03 14.8 2.6 2 23 859 881 858 881 0.95 11 21 0.0052 0.29 11.7 0.6 1 23 886 909 886 909 0.94 12 21 0.43 24 5.7 0.4 2 23 912 934 911 934 0.93 13 21 0.0017 0.097 13.2 0.6 2 21 941 960 940 961 0.93 14 21 0.0025 0.14 12.7 0.5 1 23 1019 1042 1019 1042 0.95 15 21 0.067 3.8 8.2 0.2 3 23 1116 1138 1115 1138 0.95 16 21 0.00079 0.044 14.3 0.4 3 20 1145 1162 1143 1166 0.90 17 21 0.31 17 6.1 1.0 1 23 1171 1194 1171 1194 0.97 18 21 0.0016 0.089 13.3 0.1 2 23 1200 1222 1200 1222 0.92 19 21 0.00085 0.048 14.2 5.2 1 23 1226 1249 1226 1249 0.97 20 21 0.0005 0.028 14.9 0.6 2 23 1256 1277 1255 1277 0.96 21 21 0.011 0.61 10.7 3.1 1 23 1283 1305 1283 1305 0.97
Sequence Information
- Coding Sequence
- ATGTGGAGAATACCTTGTCTCGTGataatttTATCTTCTGTGGCAAATTCTGACCCGTCTGTAAGCTTTGGGTTCCCTGAAAAAATAACCGATGACATATACCAACAGCCCGTGGAGTTGATGGGAGCTGGGGCTCCGAAATCAGCGCACGCCAAAGATCAGGTAGAGAACCGTGGTCAGGAGATGCGGTACCGCGGGGCTGAGGATTCCTGGGCACCGTTTGACTTCTCCAAGTTCGATGACTACCTCTCCCACCATTCCGACGCTGAGAGCAATAGGGTGAAGCGGCGAGCTAAGCGTCGTCGTGGCAACAGGCGTCGAAACAGGATGCGTTCCACGACCACAACCCAACCAGAGGAAGTCGAGCAGCCAAAACACGTAGACCAGTCCAGTACAGAATCGCCGGACATGATACTGAACGCGCGTCGAGCGGACGCGGCGGCGAGCCAACAGCAATccaagaaaaagaagaagaaaaaggaCAAGAAGGCCCTTTATGACACACACGATCCTCCAATTAAAGAATGGGAGTCGGGGTTCGTTGAGATGCCAAAGGATTTATACCAAGCGCATTTGCGGCCTGGCGTCATTTTCAGAATCCATATGTCTGAAGCCATTATGAAGATGCAATACCGGAACTACGGCGAAGATAAAGACGAATCCGTTATCGAAGCTGATGTGGAGTACCTCCGTCTCACTCGGAAGGTGATCAACGATGAAATCACTAAGTTCGAGGATTTGAAATGGTTGGTCGGCTGGTTCAACAACCGGTCCGATTTGATACAGGAACACATGTGCAATACGAAGTACTTTGCTGTTGGCACTCCTGCGACAATGTTCACGCACACAGAAGAGTACATGAAGCGCATGTGTCTATTTGATAATGTGTACATCGACCACATCCCCTACGTCATTGGAGAGGACGGCTCGTTGATGGCGGCAGTGGCGCCCCCAGTGCTGCACTGTGACGCTGCAACTTGCACTTCGGTGCCGTTTATTGACAGATCACCCAGCACACCTCCAATGGAGCTGAAAGTGGAATCTATAGAAGAACCTCCGGAGGATGTGATGGCTGAGGATGTTGAATATCTCGATGATATGGAATATGAAGGAAATGAGGAAGACGTGAAAGTTGAAGGCATCCAGTCCACATCCCGAGCTACGACCTCCGAGAACCGTCCCCTCAAACGGGGCAGGCCCAAGAAAGACTCCTCACCGACCAAGGCCAAGAGGCAGAAGACTGTTAAAGGTGAGACAACTGGGGACGAGGCATTGAGTAAGTCCTCAATGACAGCCACAAAAAGAAACCGACTCATGAAGAAAAACGCTATAACGCTTCTAGAATGCTCCAATATCCTCCCCTTCAAATGGCACAGACAGAACTACCTCTGCTTCTATTGCCATCTCACTCTAAAAACGGTAGAGGAAGTGAAACAGCACACTAGAGAGAAACACGTAAAACCGAACATTAAATCTGCTGTCTCGTTCTTGAGACGAGACGAAAAGGTCAAAGTTAACGTATCTTCAATAGAGTGTAGACTTTGTTCACATGCCATTGTAGACCTAAACGATTTAATGGAACACCTTAAATTACATCACAATAGAACTTTCAACGAAGGCGAAAATGGTGTGATACCTTACAAATTAGATGACGACTTTCAATGCGCGATTTGCGACGAAACGTTTCAGTATTTCATCAAACTCAACCAGCATATGAACGAGCATTTCGGACATTATATTTGCGAATTGTGCTGGAAATCGTTCCTTAGTAGCGATAGATTAAGGTGTCATTCTCTTTGTCACGGCTCGAAGTTTTCCTGTAGCATTTGTGCAGAAACTTTTGATTCTTTAACACTGCGAAACAATCACTTCTCATCAGCCCACAACAAGCCGAAACTCCTCAAATGTCTCTACTGCACAGAGATCTTTACCAGTTACAGCAAACGGAAGCAACACCACAATAAAGCCCATGATATAGCGATCCCAGAATACAAATGTCCGGTTTGCAGCAAATCGTTTCAAATTTTGAGCAAAATGACGGTACACGTGAAAGAAGTACATGTTAGGGAGAAGAATTTCTCTTGCAGCCTTTGCGATAATGGTAAAACGCGGAAATACAAGGGAAACGAGTCCTTATCCACGCGTAGAAGAAGGAATCTACAGGTTCTATTCAACAATACAAGTATTATACCGTTTAAATGGCGAGGCAAGTATCTTTGCTTCTACTGCAGCAAAGATGCGTCTGATTACGCAGAACTAAGGCAGCATACGAAAATGCACGGACAGTGTTCCATCTCGGACCATTCCTTGAAAGCTTTGAAGGGCGGAACGAATATGGAGATCAAAATTGACGTATCGAATCTGGCTTGCTTTTGCGACGAAAGAATCCCAACGCTTGACAAAATAATCGATCATCTCGAAGAGAAACATAATTTGGAATATGACAGGAACGTAGATATGGCTATAGAAGAATACAGGCTTGTTGATTTGAATTGCTTGATTTGCGATGAGAAATTTTCTTACTTTGGATATTTAGTGTCACATGTTAACACGAGTCACCCGAAAAACTGTCTTATATGCGATAAATGTAATCAGAAATTTAATAAGAAGCGTGATCTGTTCTCTCATATGAAGAACTATCACAGAGAGGGTGGGTATCAGTGTGAATATTGTCCTCAAGCCTTTAACTCGCTCAATATACTTCGAAAGCATAGGATCAATAGACATATGACTCGATGCCATATCTGTCAGCTACGACTGCCTTCAGCGGCGTTACGGCAAAAGCATATAGAGTTGGAACATCCAGACGATGGGTCCCTTCAATGTGATGTGTGTGATAAAGAATTTCACACGAAGCAAGGCCTTAGAATGCACGCCCGAAAATGCAAAGAGGACTTGTTGCAAATATCGGTCAAGAAAGAAGATTACACCATGGATTTAGATTTAACCTACAAAGACCCGACGAAAGGACCCAGCGTCAAACAGATTCGCGAAAACATAGTCACTGTCATCAATATGTCTACAGCTATACCTTTCaactttaataaaaatagatttaattGTTTCTACTGCTCTAAAGACTTCCCTGATTCGGATTCTATGAAAGAACACACGATTATCGAACATCCTGTCTGTGATGTTAAAGAAAAGTGTATTAAAAAGTGTCGAGAATCCGTCGCTTGTGTTAAAATCGACATTTCAACGTTAGCTTGTAAAGTTTGCTTGGAAAGTATGAGTAATCTGGACACTATGATTGATCATTTAGTCTCCAAACACGGCGCCAATTACGATAAGTCAATAACGACATGTCTGCAGCCCTACAGACTGATCAAGGACAATATGGCGTGCCCAAACTGTCCCGGAGAAGTGTTTCGTTTCTTTGGCACCTTACTGAAGCACATGAACAAAAatcacacaaataataatatcatttgcgtATACTGTGGCGAGACATTTCGTCGCGATCAGAACTTGCGCGTCCACATATGGAGGCACCATCGTAACGGTCGTTTTAAATGCAGCCTATGTGACGCCGACTGTAATATACCATCGCGTTTGTACATGCACATGGCTAAAACTCACGGCGTCAAAGCAGCTAAATGTCCCGAATGCCCTGAAGCATTCGCAACTCAATACCTCCGTCAGAAGCATCTCATAGACGCACACAATTCCGGTCACAAATGTTCGTTTTGCGATAAGCTTTTCACGAGAAATTCGTTCATGCGTGATCATATCAGAAGGACCCATCTCAAAGAAAAGAACGTTGAATGCTCCGTGTGTAACATgaagttttttaataatattttgttgagACGACATATGGTGAAACATAGTGGCGAGAAAAACTTCCATTGCGATGTGTGTGGGGAGAGGTTCTTTTGGCGGAAGAGTTTGCGGACGCACATGTCGAGGCATAATAAACATTTGGATGCTATAAGTTTGTAA
- Protein Sequence
- MWRIPCLVIILSSVANSDPSVSFGFPEKITDDIYQQPVELMGAGAPKSAHAKDQVENRGQEMRYRGAEDSWAPFDFSKFDDYLSHHSDAESNRVKRRAKRRRGNRRRNRMRSTTTTQPEEVEQPKHVDQSSTESPDMILNARRADAAASQQQSKKKKKKKDKKALYDTHDPPIKEWESGFVEMPKDLYQAHLRPGVIFRIHMSEAIMKMQYRNYGEDKDESVIEADVEYLRLTRKVINDEITKFEDLKWLVGWFNNRSDLIQEHMCNTKYFAVGTPATMFTHTEEYMKRMCLFDNVYIDHIPYVIGEDGSLMAAVAPPVLHCDAATCTSVPFIDRSPSTPPMELKVESIEEPPEDVMAEDVEYLDDMEYEGNEEDVKVEGIQSTSRATTSENRPLKRGRPKKDSSPTKAKRQKTVKGETTGDEALSKSSMTATKRNRLMKKNAITLLECSNILPFKWHRQNYLCFYCHLTLKTVEEVKQHTREKHVKPNIKSAVSFLRRDEKVKVNVSSIECRLCSHAIVDLNDLMEHLKLHHNRTFNEGENGVIPYKLDDDFQCAICDETFQYFIKLNQHMNEHFGHYICELCWKSFLSSDRLRCHSLCHGSKFSCSICAETFDSLTLRNNHFSSAHNKPKLLKCLYCTEIFTSYSKRKQHHNKAHDIAIPEYKCPVCSKSFQILSKMTVHVKEVHVREKNFSCSLCDNGKTRKYKGNESLSTRRRRNLQVLFNNTSIIPFKWRGKYLCFYCSKDASDYAELRQHTKMHGQCSISDHSLKALKGGTNMEIKIDVSNLACFCDERIPTLDKIIDHLEEKHNLEYDRNVDMAIEEYRLVDLNCLICDEKFSYFGYLVSHVNTSHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYQCEYCPQAFNSLNILRKHRINRHMTRCHICQLRLPSAALRQKHIELEHPDDGSLQCDVCDKEFHTKQGLRMHARKCKEDLLQISVKKEDYTMDLDLTYKDPTKGPSVKQIRENIVTVINMSTAIPFNFNKNRFNCFYCSKDFPDSDSMKEHTIIEHPVCDVKEKCIKKCRESVACVKIDISTLACKVCLESMSNLDTMIDHLVSKHGANYDKSITTCLQPYRLIKDNMACPNCPGEVFRFFGTLLKHMNKNHTNNNIICVYCGETFRRDQNLRVHIWRHHRNGRFKCSLCDADCNIPSRLYMHMAKTHGVKAAKCPECPEAFATQYLRQKHLIDAHNSGHKCSFCDKLFTRNSFMRDHIRRTHLKEKNVECSVCNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMSRHNKHLDAISL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -