Egri016660.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ectropis grisescens
Gene Symbol
-
Assembly
GCA_017562165.1
Location
chr10:6056658-6156145[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00047 0.026 15.0 1.3 1 23 313 335 313 335 0.97
2 19 0.00063 0.036 14.6 1.0 1 23 341 363 341 363 0.98
3 19 0.0012 0.068 13.7 2.8 1 23 369 391 369 391 0.97
4 19 0.14 8.1 7.2 0.8 1 23 397 419 397 419 0.96
5 19 0.13 7.4 7.3 2.0 1 23 425 447 425 447 0.97
6 19 0.13 7.4 7.3 2.0 1 23 453 475 453 475 0.97
7 19 0.21 12 6.6 4.2 1 23 481 503 481 503 0.97
8 19 0.0061 0.34 11.5 0.9 1 23 509 531 509 531 0.98
9 19 0.00092 0.052 14.1 0.5 1 23 537 559 537 559 0.98
10 19 0.0012 0.068 13.7 2.8 1 23 589 611 589 611 0.97
11 19 0.28 16 6.3 0.5 1 23 617 639 617 639 0.94
12 19 0.13 7.4 7.3 2.0 1 23 645 667 645 667 0.97
13 19 0.0013 0.073 13.6 0.7 1 23 673 695 673 695 0.98
14 19 0.0025 0.14 12.7 2.5 1 23 701 723 701 723 0.98
15 19 0.0014 0.081 13.4 0.6 1 23 729 751 729 751 0.98
16 19 0.00079 0.044 14.3 4.0 1 23 757 779 757 779 0.98
17 19 0.00014 0.008 16.6 1.7 1 23 785 807 785 807 0.98
18 19 0.00023 0.013 16.0 1.2 1 23 813 835 813 835 0.98
19 19 0.0002 0.011 16.2 1.3 1 23 841 863 841 863 0.98

Sequence Information

Coding Sequence
ATGGATAATAAACAGTGGCTGAACAGTAAATCGCTGACGTCGTCGTTGAGAACGCATAATCCTGAAGTTTTCAAGCTGCCTGATGCTGTTAGAGAGTCTGGCGAAAGCATTGAACAGCGCCACAATCTCCGTCCTCTGCAGCCGCTCGTGCTTGTGCCTCAGTGGCAGAGTCCCTTGGCTCGGATCACCCCTAACATGTTATTGATGGCTTCCCGAGTCTCCTCATCTTCTGTCGGGTTGCCCGTGAAGTACTCCTCCTGCTCTAAGTATGGCCCGGCTTTCGCTAAGGCTCTCATCTCTAATTCTATGTGCCGAAGGGCCTTTGTAGCCCGTGTAGCGCTCCGGGTTCAGCGAGAGATCGACGTAGTCGGCCTCGGCGTCTCTGTCATCACTCCCACAGAAGTTCTCGTGAGCATCGTCGTAAACTTTCCATTTGGCGATCTCGTACTGACTGGCGGCACTGATGGTCGTGTTCAAGAAACCCAGGTCGTGGTCGTGGTCCGTGTCAGAGCCGCAGCTGGCCTGCGCGGCCTGCGAGTACTTGGCGGCGGGCGTCTCGTCCGAGTGATCGTTGTTGTACCCGTTCTCGTAGCCGGGCACGCTCTCCTTCGCACAAGTCTTGATGTGGCAGTACTTCATGGCGCAGCGGCTGTCGTCGGCCCAAAACGGACATTCTTTCTTCAAATTAACTTTATAAAAGCGGAAGTAGTCCTTGCTCACGAGACTCTGGATGCGCGGGAAGATCTTGACGTTGTTGAAGTAATCGATCGTGTCAACGTTGCAGGAGCAGTCGCCCAGCGCGCCGTGCAGCTCGTCGAAGCAGGCGGAGCTGTCGCAGGGCTTCGTCTCGTAGAGCTCCGAGTCCTGACCCACGGCTTagcatcacaagcagTCCGTATGAAACGACACAAATtgacacatactggagaaaaaccatttgaatgtgatatgtgtgactatagagcatcacaagcatccagcttaaaaaaacacaaattcagacatactggagaaaaaccatttgaatgtgatatgtgtgattatagagcatcacaagcatccaccttaaaacaacacaaattcacacatactggagaaaaaccatttgaatgtgatatgtgtgattatagagcatcacaagcatcccacttaaaacaacacaaattcaaACATAccggagaaaaaccatatgaatgtgatatgtgtgactaTAGAGCATTATACGCATCCagcttaaaacaacacaaattcacacatactggagacaaaccatatgaatgtgatatgtgtgactaTAGAGCATTACACGCATCCagcttaaaacaacacaaattcacacatactggtgaaaaaccatatgaatgtgatatgtgtgactaTAGAGCATTACACGCATCCagcttaaaacaacacaaattcacacatactggagaaaaaccatttcaatgtaatatgtgtgattataaatCATCACAAGCAATCCACTTGATTTGtcataaattaacacatactggagaaaaaccatttgaatgtgatatgtgtgattatagagcatcacaagcagTCCGTTTGAAACGACACAAAttcacacatactggagaaaaaccatatgaatgtgatatgtgtgactatagagcatcacaagcagccagcttaaaacaacacaaattcacacatactggagaaaaagcATTTGAATGTTATATagcatcacaagcatccagcttaaaacaacacaaattcgcacatactggagaaaaaccatttgaatgtgatatgtgtgattatagagcatcacaagcatcccacttaaaacaacacaaattcaaACATAccggagaaaaaccatatgaatgtgatatgtgtgactaTAGAGCATTATACGCATCCagcttaaaacaacacaaattcatacatactggagaaaaaccatatgaatgtgatatgtgtgactaTAGAGCATTACACGCATCCagcttaaaacaacacaaattcacacatactggagaaaaaccatttgaatgtgatatgtgtgattatagagcatcacaagcatcCCGCTTGAAAAgtcacaaattaacacatactgaagaaaaaccatttcaatgtgatatgtgtgattataaagcATCACAAGCAATCCACTTGATTCAtcataaattaacacatactggagaaaaaccatttgaatgtgatatgtgtgattataaagcATCACAAGCAGCCagcttaaaacaacacaaattcacacatactggagaaaaagcATTTGAATGTTATATGTGTGATTTTAAAACATCACGAGCATCCCACTTGAAAAgtcacaaattaacacatactgaagaaaaaccatttcaatgtgatatgtgtgattatagagcatcataTGCATCCAACTTTAAAAGACACAAATtgacacatactggagaaaaaccatttgaatgcgATATGTGTGactatagagcatcacaagcatccagcttaaaaaaacacaaattcacACATTCTGGAAAAAAATCATTTGAATGTAATgagtgtgattatagagcatcaaaaGCATCcaacttaaaacaacacaaattcacaCATACCGGAgcaaaaaccatatga
Protein Sequence
MDNKQWLNSKSLTSSLRTHNPEVFKLPDAVRESGESIEQRHNLRPLQPLVLVPQWQSPLARITPNMLLMASRVSSSSVGLPVKYSSCSKYGPAFAKALISNSMCRRAFVARVALRVQREIDVVGLGVSVITPTEVLVSIVVNFPFGDLVLTGGTDGRVQETQVVVVVRVRAAAGLRGLRVLGGGRLVRVIVVVPVLVAGHALLRTSLDVAVLHGAAAVVGPKRTFFLQINFIKAEVVLAHETLDAREDLDVVEVIDRVNVAGAVAQRAVQLVEAGGAVAGLRLVELRVLTHGLASQAVRMKRHKLTHTGEKPFECDMCDYRASQASSLKKHKFRHTGEKPFECDMCDYRASQASTLKQHKFTHTGEKPFECDMCDYRASQASHLKQHKFKHTGEKPYECDMCDYRALYASSLKQHKFTHTGDKPYECDMCDYRALHASSLKQHKFTHTGEKPYECDMCDYRALHASSLKQHKFTHTGEKPFQCNMCDYKSSQAIHLICHKLTHTGEKPFECDMCDYRASQAVRLKRHKFTHTGEKPYECDMCDYRASQAASLKQHKFTHTGEKAFECYIASQASSLKQHKFAHTGEKPFECDMCDYRASQASHLKQHKFKHTGEKPYECDMCDYRALYASSLKQHKFIHTGEKPYECDMCDYRALHASSLKQHKFTHTGEKPFECDMCDYRASQASRLKSHKLTHTEEKPFQCDMCDYKASQAIHLIHHKLTHTGEKPFECDMCDYKASQAASLKQHKFTHTGEKAFECYMCDFKTSRASHLKSHKLTHTEEKPFQCDMCDYRASYASNFKRHKLTHTGEKPFECDMCDYRASQASSLKKHKFTHSGKKSFECNECDYRASKASNLKQHKFTHTGAKTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-