Egri008284.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr24:8927449-8935244[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.042 2.4 8.8 2.1 2 23 8 29 7 29 0.95 2 19 0.0022 0.12 12.9 4.5 1 23 34 57 34 57 0.96 3 19 0.55 31 5.3 3.7 2 23 69 91 68 91 0.95 4 19 4.5 2.5e+02 2.5 0.5 1 13 97 109 97 111 0.89 5 19 7.9 4.5e+02 1.7 0.4 1 23 154 176 154 176 0.79 6 19 0.022 1.2 9.7 0.3 2 23 204 226 203 226 0.95 7 19 0.001 0.057 13.9 1.7 3 23 251 271 249 271 0.96 8 19 0.0075 0.43 11.2 0.2 2 23 275 296 274 296 0.95 9 19 0.00012 0.0065 16.9 0.8 1 23 301 324 301 324 0.96 10 19 0.12 6.6 7.4 1.2 2 23 335 357 334 357 0.95 11 19 0.0007 0.039 14.4 0.3 1 23 363 386 363 386 0.91 12 19 0.019 1.1 9.9 1.9 1 23 455 477 455 477 0.99 13 19 0.025 1.4 9.5 0.3 2 23 490 512 489 512 0.96 14 19 0.00015 0.0085 16.5 1.7 3 23 537 557 536 557 0.98 15 19 0.17 9.7 6.9 3.3 2 23 603 625 602 625 0.95 16 19 0.0005 0.028 14.9 0.4 1 23 631 654 631 654 0.98 17 19 1e-07 5.6e-06 26.5 0.4 2 23 659 680 658 680 0.96 18 19 0.00028 0.016 15.7 1.1 1 23 686 708 686 708 0.98 19 19 0.006 0.34 11.5 0.7 1 23 712 735 712 735 0.94
Sequence Information
- Coding Sequence
- ATGAACGTACACGATAACTTGGTCTGTGAGACTTGCGGCTTAGGATTTATGACTCACCATCGACTTCGGACTCACAGAGTGATCCACGAAAATGGAAGTCACAAATGTGACCAGTGCTCTAAAATATTCACCACGAAACTTAAATTACGGTATCACATAGACAAATTCCATAAAGAGGCCAGCGAGATGAAGATGAAACGTCAGAAATGCCCTCATTGTCTCGAAAGATTTTCTGGACACTACAGAAAGCTGACTCACATGAGAGAAGTTCACGGAGTAACATTTAAATTCGAATGTCAGACGTGTAAAGCCGAATTCCCGACAAAGATCCACGACTTCACCTCAGAAAACAAGAAATCAAGAACCAGCGAATGGATCTTGACACTGTCAGAACGAGAAAACGTGGCCACATTCCTAGAATTCACTACCGTCGTCCCTTTCACTGTTTTTCACGGgcaattcaaatgtttttattgcGATGACATTTCCCCCGACATAAACGCCACATTGAATCACACGAAAACACATGACGTACCCAATAGATCCTTATTAGTTAAATTGCATATCAAGGCAGGCAAACGTTTAATAGCTGTCGACGCTTCTAAGTTAAACTGTAGAATATGTGAGCAAAAGTTTGTCAAACTCGATGAGATTAAAGAACATTTAAAATCTGCTCACAAGAAAGTGTTTAATGAATGTAGAGATGGCGTAACGCCTTATAACCTCGACACAACGAGCGGTCGTCTAGCATGCCACACCTGCAGCATGGAGTTCATATCATTCTACACTCTGAACCGTCACATGAATGACCACAAAAATTTGGTTTGTTACATCTGCGGAGCGGGTTTCATGAACCATTCCCGACTAAAATCTCACGTCGCTATCCACGAAAATGGAAACTACAAATGTGAGCAATGCCCTAAAATATTCGCAACCAGAAATAAGCTAAATTATCACGTAGGAACACGTCACTGCGATGACGAAAACAAACTTAAACGACAAAGGTGTCCCAACTGCTTGGAACGGTTTTCATCGTACTATAGAAAGATAATCCATATGAAAAACACACATGGCGTCGCTTTGGAGTTCGCGTGTAAAAGCTGCGGTGTCATATTTTCAAGTAAAACAGCATTAACAAAACACAACACGATAGTACACAAACAAACGAAATGTGCAAATTCTGTGCGTGAAAGCAAGCCAATTAAGCcaaagttttgtttttcagaAGCGACACCAGTGCAAGCTCAAACCGATGAGGGGCCAAGAACTAGTGCGTGGATAATCACAGCAACAGAACGAGTGAACGCGGCTGCGTTGATTCAATTCACAACAGTCATACCTTTCACAGCGCTGCAGGGCAGCTATAAATGCTTCTACTGTGAAGAAATTTTCACTGAACTACATGCGGCACTACAGCACACGAAAACCCACACAGTTCCTATCATCAAAGTTGATGCGTCAGGCCTGAAATGCAGAATCTGCGAGCTTAAATATACAGAACTTGATGACATTAGAACACATTTGAATACCGTCCATAAGAAAATCTTTAATAAAGGTGGAAATGGTTTGATGCCGTACAATTTGAGCACACCTAGTGGCAACGTGGCATGCCACAAGTGTGGCTCCGAATTCACTAGTTTTTTTGCTTTGAATCGACACATGAACGTTCACGATAATTTGGATAGTGCATCAGAACGGGAACCACAAATGCGACCAATGCGATCAGGTTTTCAACAAAAAATGAAGCTGCGTTGCCACGCGACCAGACATCACGAACAGACGAATGAAAAGAGACTGAAACCAAACAAATGCCCGCACTGCTTGGAAAGGTTTTCTGAACACTACCAAAAGTTACTCCATATGAAAGAAGTCCATCAAATTAAGTTTAAATTCGAATGCCAGACTTGCAAAGCTGAATTTCCTAATAAGATGGCCTTGACAGAACATACAAGGAAGGTCCACATACAAAATATAGTGTGCAAGATTTGTGGGAAGTGCTTTGGGAATCCTGGTGCGCTAAGGAGGCATATGAGAGGCCATACGGGAGAGAGAAGTTTCGTCTGCGCGGTGTGCCAAAAAGCATACATGCATGAGAAGCAGCTAAGGGTGCACGTAAAAACACACGGATACCGGTTCACATGCATTAAATGTGGCAACGGTTTCATGGACAAGGCTGAATTGAAGAAGCATAAAAGACAGTGGCATTCGGAACAGGCGACGAAAAACTTTTCTGAAATACCTCTATAG
- Protein Sequence
- MNVHDNLVCETCGLGFMTHHRLRTHRVIHENGSHKCDQCSKIFTTKLKLRYHIDKFHKEASEMKMKRQKCPHCLERFSGHYRKLTHMREVHGVTFKFECQTCKAEFPTKIHDFTSENKKSRTSEWILTLSERENVATFLEFTTVVPFTVFHGQFKCFYCDDISPDINATLNHTKTHDVPNRSLLVKLHIKAGKRLIAVDASKLNCRICEQKFVKLDEIKEHLKSAHKKVFNECRDGVTPYNLDTTSGRLACHTCSMEFISFYTLNRHMNDHKNLVCYICGAGFMNHSRLKSHVAIHENGNYKCEQCPKIFATRNKLNYHVGTRHCDDENKLKRQRCPNCLERFSSYYRKIIHMKNTHGVALEFACKSCGVIFSSKTALTKHNTIVHKQTKCANSVRESKPIKPKFCFSEATPVQAQTDEGPRTSAWIITATERVNAAALIQFTTVIPFTALQGSYKCFYCEEIFTELHAALQHTKTHTVPIIKVDASGLKCRICELKYTELDDIRTHLNTVHKKIFNKGGNGLMPYNLSTPSGNVACHKCGSEFTSFFALNRHMNVHDNLDSASEREPQMRPMRSGFQQKMKLRCHATRHHEQTNEKRLKPNKCPHCLERFSEHYQKLLHMKEVHQIKFKFECQTCKAEFPNKMALTEHTRKVHIQNIVCKICGKCFGNPGALRRHMRGHTGERSFVCAVCQKAYMHEKQLRVHVKTHGYRFTCIKCGNGFMDKAELKKHKRQWHSEQATKNFSEIPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -