Egri008235.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr24:8907241-8913109[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.7 97 3.8 0.1 2 23 36 58 35 58 0.92 2 20 0.00028 0.016 15.7 1.7 2 23 82 103 81 103 0.96 3 20 0.021 1.2 9.8 0.4 1 21 107 127 107 128 0.94 4 20 1.2 68 4.2 0.1 1 23 169 192 169 192 0.94 5 20 3.8 2.1e+02 2.7 0.5 2 23 218 240 217 240 0.93 6 20 0.0046 0.26 11.9 0.2 2 23 264 285 263 285 0.95 7 20 7.6e-05 0.0043 17.5 0.0 1 23 289 312 289 312 0.97 8 20 0.056 3.2 8.4 0.6 1 23 316 339 316 339 0.95 9 20 2.5 1.4e+02 3.3 0.4 1 23 344 369 344 369 0.90 10 20 0.12 6.7 7.4 6.4 1 22 378 399 378 401 0.88 11 20 0.11 6.2 7.5 3.2 1 22 483 504 483 508 0.94 12 20 1.5 85 3.9 1.6 3 23 533 553 532 553 0.95 13 20 0.0024 0.14 12.7 0.3 2 23 576 597 575 597 0.97 14 20 0.0043 0.24 12.0 0.0 1 23 601 623 601 623 0.94 15 20 0.0094 0.53 10.9 0.1 1 23 628 651 628 651 0.84 16 20 0.013 0.73 10.5 5.2 1 23 657 680 657 680 0.96 17 20 0.00041 0.023 15.2 0.6 1 23 687 710 687 710 0.95 18 20 2.6e-05 0.0015 18.9 2.0 1 23 717 739 717 739 0.98 19 20 4.6e-06 0.00026 21.3 1.4 1 23 746 768 746 768 0.99 20 20 0.00011 0.0062 17.0 0.4 2 23 772 794 771 794 0.93
Sequence Information
- Coding Sequence
- ATGGCAGCTTTAAGAGATCATGTAAAGACTGTGCATTCCAATGCTGACTTTAACAGTGCATTTTACAAAGTAACAGACACACTGAAAATTGATATCACAGAGCTGAAATGTAACGTTTGTTCACAAGACATCCCCGACATTGATACTTTGATGACTCATTTCTCGAAGGAACACAACATTCCAGTTAATTTCGAGGCTCCGTTCGGAGTGTTGCCACATCGACAAAACTCTTCTGGGCTCTGGATGTGTCTCTACTGCGATAAAACTTTCACAAAATTctcccaaaataatgaacaCCTACGTAATCACGTTAAAATTTTCACGTGTGAAAAATGCGGCGCTACTTTTTTGTCTACTTATGGTTTGAGACAACACGAACGTAAATTCCAATGTTACAAGATGAATTATAAACCCCGTTTCGGTAAAACGCTAAAACATCGCCGGAACACGGAAATAATACTTCAGTGTTCAACAGCATGCCCGTTCAGGACTTGGGGTCACAATTTTAACTGCGTCCTTTGCCGAGTACAATCCAACGATCCTATAGGTCTTCGAAGTCACATGGTTTCAAAGCATGCAGATTTCGACATTGATCAAGTATTCAGTAGAAAATTGCGAAAAGAATTCTTGAAAGTAGACATCACGGATCTGCAGTGCAAGCTGTGCTTTATGAGAATGGACTCGATCGACTATCTATTAACACATCTGAAAAATGATCACAAGCAACCAATAAATACTGATGTCCAACCGGGGGTGATCCCTTTTAGACTTAACGACGGTTCCGTCTGGAAATGTGCTATTTGTACTATCGAATTTACAGATTTCATATCGTTGAAGAAGCACACAATAGAACACTTTCAAAACTACGTGTGCGATACTTGTGGGGAAGGGTTTATTACTGAAACAGCATTAAATGCTCATACAAAGATACCTCATGACAATAAACACGCCTGTGGCAGATGTGTGGCGACCTTCTCGACGTTGGAAGAAAGAAACATCCATATTAAGACGCAGCACACCTCTTTACCTTACATGTGCATGTATTGCAAAGATAAACCAAGATTTGCCACGTGGGAACTAAGAAAGAGACATCTAATGGAGATCCATAACTACAAACCTGGAGCGGAGCAGTATGAGTGTACCACTTGTCATATGACGTTTAAGACCCGATCACAGAAGTATCATCACAATGTTAGATCCCATCGGAGCCAGAAAGAGAGGGAATACAATTACCATTGCGgtaaaagaaaacatggaCACACCAGcattgaaactaaagaaactgtATTAAACTTAGAGGAACCTTACAAATCAGATCCAAAAACTCAGAAAGGCAAGATGTACCAGAGAAGTGCGAGAGCAGAAGCAAGAATAGCTACTAAGAAGAACGCCGCTTCAATTCTAGCGTGCTGGACATTTTGCCCTTTTAGATGGACCAAGAATAGATTCAAATGCGCGTACTGCGAAGCTGATTTCACAGAATGCAACTCTTTGAGAGATCACGTTAGAGTGTGTTCCACACATCACACTATAACTGATGTCTATAACAAATTTCGAGAAATGCCATTGATCAATGTGGATGCTACAGACGCTATTTGTTGTATCTGTTCTTCGCCCTTCAAAGACATTTCCCAAATGCACGAGCATGTTATACAGCATGGTTTCGAATTCGATATTCATCAGCGCGACGGCGTTTTACCTTTCTATCTAGATAAGGAATCgtggaaatgttttatttgcgacgagatatttaataattttctgAAGTTGTATGAGCATATGAATGTTCATTATCAGTATTACATTTGCGATGTCTGTGGGAAAGGATATATGACAGCACCACGGCTGAGGAAACATGCTGAGGGTCATATATCGGGATCGTTTTCTTGCTCTGAATGTGGGAAAGTTTTCGTTATGCGGACTGCGAGAGATGCTCATAAAGCTTCAGCCCACAGCAAAGGGCCCCGATACGAATGCCCACACTGCAATACCCGGTTTCATAGCTATTACGatagaataaaacatttaaaagaaaCTCACGGTGAAAAGGAGGTGCTCTACAAATGTTCCTATTGTGATTTATCGTTTAAAACTAGTGGCAGTCGTGCTGGACACGTACGACAAGTACATTTCTTGCCACaacatgattttaaatgctcGCTATGTCAGTGGAAGTTCAAAACTGGCTACGAGCTCAAAAGGCATATGGTGAGGCATACGCTCAAGGATAAAACGTATCGATGTACCGTATGTGCCAAGAGTTTCCCTCGGGTTAAAACATTAACTACGCATATGAAAACTCACCAAAACCTAACTTGCAAATGGTGTGGATTGGAATTCAGGCAGAAGAGTCAGTTGGTGCTTCATACTCAAGCTACTCATGGAAATGTAATAGATACAGTTCCAACGACTGTTAAAGAAACTTACTGTTCATAA
- Protein Sequence
- MAALRDHVKTVHSNADFNSAFYKVTDTLKIDITELKCNVCSQDIPDIDTLMTHFSKEHNIPVNFEAPFGVLPHRQNSSGLWMCLYCDKTFTKFSQNNEHLRNHVKIFTCEKCGATFLSTYGLRQHERKFQCYKMNYKPRFGKTLKHRRNTEIILQCSTACPFRTWGHNFNCVLCRVQSNDPIGLRSHMVSKHADFDIDQVFSRKLRKEFLKVDITDLQCKLCFMRMDSIDYLLTHLKNDHKQPINTDVQPGVIPFRLNDGSVWKCAICTIEFTDFISLKKHTIEHFQNYVCDTCGEGFITETALNAHTKIPHDNKHACGRCVATFSTLEERNIHIKTQHTSLPYMCMYCKDKPRFATWELRKRHLMEIHNYKPGAEQYECTTCHMTFKTRSQKYHHNVRSHRSQKEREYNYHCGKRKHGHTSIETKETVLNLEEPYKSDPKTQKGKMYQRSARAEARIATKKNAASILACWTFCPFRWTKNRFKCAYCEADFTECNSLRDHVRVCSTHHTITDVYNKFREMPLINVDATDAICCICSSPFKDISQMHEHVIQHGFEFDIHQRDGVLPFYLDKESWKCFICDEIFNNFLKLYEHMNVHYQYYICDVCGKGYMTAPRLRKHAEGHISGSFSCSECGKVFVMRTARDAHKASAHSKGPRYECPHCNTRFHSYYDRIKHLKETHGEKEVLYKCSYCDLSFKTSGSRAGHVRQVHFLPQHDFKCSLCQWKFKTGYELKRHMVRHTLKDKTYRCTVCAKSFPRVKTLTTHMKTHQNLTCKWCGLEFRQKSQLVLHTQATHGNVIDTVPTTVKETYCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -