Egri007143.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- dnaaf5
- Assembly
- GCA_017562165.1
- Location
- chr17:4471478-4515379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00014 0.0077 16.7 2.4 2 23 825 846 824 846 0.97 2 19 0.49 27 5.5 0.3 1 23 852 874 852 874 0.96 3 19 0.05 2.8 8.6 0.9 1 23 880 902 880 902 0.98 4 19 0.0022 0.13 12.9 0.6 1 23 908 930 908 930 0.98 5 19 0.0022 0.13 12.9 6.3 1 23 936 958 936 958 0.98 6 19 0.0003 0.017 15.6 0.5 1 23 964 986 964 986 0.98 7 19 0.0083 0.47 11.1 0.7 1 23 992 1014 992 1014 0.97 8 19 0.00077 0.043 14.3 0.5 1 23 1020 1042 1020 1042 0.98 9 19 0.0033 0.19 12.3 4.2 1 23 1048 1070 1048 1070 0.98 10 19 5e-05 0.0028 18.1 0.6 1 23 1076 1098 1076 1098 0.98 11 19 0.0013 0.074 13.6 0.7 1 23 1104 1126 1104 1126 0.98 12 19 0.012 0.67 10.6 0.4 1 23 1132 1154 1132 1154 0.98 13 19 0.00029 0.016 15.6 1.5 1 23 1160 1182 1160 1182 0.98 14 19 0.012 0.67 10.6 0.4 1 23 1188 1210 1188 1210 0.98 15 19 0.00029 0.016 15.6 1.5 1 23 1216 1238 1216 1238 0.98 16 19 0.018 1 10.0 1.0 1 23 1244 1266 1244 1266 0.98 17 19 0.00077 0.043 14.3 0.5 1 23 1272 1294 1272 1294 0.98 18 19 0.014 0.79 10.3 0.5 1 23 1300 1322 1300 1322 0.98 19 19 0.00015 0.0086 16.5 1.7 1 23 1328 1350 1328 1350 0.98
Sequence Information
- Coding Sequence
- ATGGCTGGTACCAAACCAAAACTGCAAGATAACCCTCGTGGTGCTCTCGAGCAGTACATAACCGCTTTGCAAAGTGAATCAAAAATGACTCGCAAAAAAGCTCTTTTAGACGTGAATTCTGAGATATTTGAGAAGGACGAAAATTCTAATTGCGATCTCACTGTCATATTTCCTGAAATTTACgcatatattttaaaaagtttttccGATGCTTCCGAGGCTTGTCGCGAAGCTGCCGCCAAGATTATTTCGAATTTCATCGATAAGTTGCCCCTTAACGACTACTATTTGACTTATATCTTACCGGTAGTGGTTCGACGAATCGGATGCCCAGAAATAGTAGAAGACTCTGAAGAAATCAGACTGGTTTTGATGGAACTTGTTCACCAAATATTAGACAAGTATAAAGTAACCCACTTACTGAGTCCTTTTATAAATGACTTCACTAATATCCTGACTAAGACAGCCACAGATCCATATCCTAAAGTAAAACTTGAGGCATGCGAATGTATTATTCTTTTAACTAAAGTACTGGCCAGAGACTTTCATTTTCAGTGTGAAAGTTATGTAAAACCGGTGATTTCCAACTATGGGCATCAACATTATAGAGTTCGAGTTGCAGCTATCAAAGCAATAGTGATGTCTGGCAATGCCAAATGTTTCGAGCTGTCTATCACCCCGATGGCAGAGAAATTGTTTGACGAAAACCCGCAGGTCCGCATGCAAGTCACCCTCGAGGTCGGCAATTGGATGCTCAACTACAGAGACCGATACTCATTCTGGCATCGAATGATACCGCTGCTACTTACTAGTATGAGCGACGTCATGGATGATATCCGCCAGACGGCAGACAAGTTCTGGACCGACATTGGTCTACAGTATATGGAGGAAAACGAAGAAGATTTAAAGAAAAAGACTGATTTCTTGAAGGATGTCCCATCTCACTACCCTGATGTGAAGAGACCTAACCTCGGCTGTAGGGTACTCATTATGAGTAACATTGGGAAGATTGTTCCAGCTATTTCTAGAGAAATGGACGGATGGCAAGCCGATGCGCGTCTCCGTGTCTCCCAACTGCTGTGTTGGCTGATCCTGTGCGCGGAGGAAGGTTCCACGCAACATGCGAACACAATCGTCAAGACCATGATGCGGGGAGCAGCCGATGATGACCCTAGGGTGGTTCAGGAGGTGAAAAGATCAGCCGAATTATTCGGGTACTTCATAACACCGGATACGTGGTGGCCGCTACTGGAAGCCGAGGTGGACTCGTGGCCGGCGCTCCTCGTGCTCGCGGACGTCGTGCGGGGCTCCCGCGCCGACCTGCTCGCGGGGAAGGTGCTGGGGGAGATGTGCGGGGAACTGGCCGATCCCGACCGATGCAGGACTAGGAAGCTGAAATACCAAACCCAGCTGCTTCGTCTGTCTGAGGCCATCCTGCAGCTGTGCGGGGAGGCCTGCCTGCCGGTGGCTGACAAGCTCTTCACTATCAACTACACCGTGTACGCGATGCCGGTGGACGGGCAGATACAATTTATGGCGCTCTCTAATCTGGACAAACTGCGCTACATAGAGAAGTGCGGCCGCACCCTGACCACGCTGTACGAGAAACACATCGGTCGGGTTCTCGCCGACATCACCAGCGACGCTCTCACGTGGACCCTGCTCACTCCCGACTGCTGCTTGCTAGAGACCACGCTCCTACACTCTGGAGCGGCGATGGGTGCCCAGCTGCACCTGATCGCTCCGCTACTGCGCGAGTGCCTCGCCACGCCGAAGGTGGACCCCGAGGTGAAGCTGAAGATCTTCACCACGCTGTCCACGGTGCTGCTGAAGCGGCAGGAcaacttctacaagagcgagaCTGACAAGCTCGAGGCCTTCTTGAAGATCGTCATTGAAGAGGTGATAATGCCGAACCTGGTGTGGTGTCCGGGGCGCACGGCCGAGGCGGTCCGCACGGCCGCGGTGGCGTGCCTCTGCGCCGCTCTGCAGGACAACCCGCGGGAAGATGCGATCAACGACGACGGAGGCGACGGTGATACCACCGCCAAGGAAGTGAACCTGTTCCCGTCGAAGGAGTCGCTGGAGCCGTTTCTGGAGCAGATAGTGCCGCTGATGGTGGGTCTGGTGGACGACAACTCGACGCTGACGCGGCAGCACACGCTGCGGGCTGTGTGCTGCCTCGCGACGCTGGCCGCGCGCCGGGGGTGCTTCACCGCTGATATCCTGCACAAGATGTACTTTGTGGTCCTAAAACGTCTAGACGACAGTAGCGACAAGGTCCGTTCGTTCGCCGTGCAGACCACGTGTGCGCTGTTCAAGCACCGGCCGGAGCCCTACGACACGGTGCTCTTCGGGGCGCACGTCGACGCGGTCTACAGCGCCATGCTGATACATCTCGACGATGTCGAGGAGTCCTTCAGGGCTGAGATGCTTGgaaaaaaactgTTACTTACTGGAGAAAAATCaattgaatgtgatatgtgcaATTATAGAACATCACAAGCAAGCCATTTAAAaagacacaaattaacacatactggagaaaaaccatttgaatgtgatatgtgtatATATAGAGCAGCAGAAGcatctactttaaaaaaacacaaattaacacatactagAGCAAGCCCGTTTGAATGTGTTATTTGTGATTATAAAGCATCACAAGCATGTGATATGAaaatacacaaattaacacatattgGAGAAacaccatttgaatgtgatatgtgtaacTATAAAGCACCACAAGCatctaaattaaaacaacacaaattaacacatactgaaGAAAAaacatatgaatgtgatatgtgtcattatagagcatcacgaaaaaaccatttaaaacgacacaaattaacacatactggagcaaaaccatatgaatgtgatatgtgtgattatagagcatcagaAAAAGGCCAATTAAAACGACAcacattaacacatactggagtaaaaccatttgaatgtgatatgtgtgattatagagcagcGCACGCATCTAGTGTAAAACGACACAGATTATTGCATACtagagaaaaaccatttgaatgtgatgtgTGTAATTATAGGGCAACACAAGCATCTAGATTAAAACAGCAcctattaacacatactggagaaaaaccatatgaatgtgatatgtgtgattataggaCATCACACACGACCAACATGAAaagacacaaattaacacatactggagaaaaaccatttgaatgtgatatttgtaattttagagCATCACAAGCGTCTAATTTAAAACGACACAGATTAATGCAtgctggagaaaaaccatttgaatgtgatatttgtaattatagagcatcacaggcATCTagattaaaacaacacaaattaacacatactggagcaaaaccatatgaatgtgatatgtgtgattatagagcatcactaGCGTTTAGTTTAAAACAACACAGATTAAtgcatactggagaaaaaccatttgaatgtgatatttgTAATTATAGAACATCACGAGCATCTagattaaaacaacacaaattaacacatactggaacaaaaccatatgaatgtgatatgtgtgattatagagcatcactaGCGTTTAGTTTAAAACAACACAGATTAAtgcatactggagaaaaaccatttgaatgtgatatttgTAATTATAGAACATCACGAGCATCTagattaaaacaacacaaattaacacatactggaacaaaaccatatgaatgtgatatgtgtgattatagagcagcGCACGCATTTAGTGTAAAACGACACAGATTAATGCATACtagagaaaaaccatttgaatgtgatgtgTGTAATTATAGGGCAACACAAGCATCTAGATTAAAACAACAcctattaacacatactggagaaaaaccatatgaatgtgatatgtgtaatTATAGAGCAGCAGAAGCATCTACTTTAAAAAACCACAAATTTACACATactgaaaaaaaactatatgaatgtgatatgtgtgattatagagcatcacaaaaACGCCAATTAAAACGACACAAATTGACACATTCTGGAGAAAAACGATATgagtgtgatatAACTTCCTGA
- Protein Sequence
- MAGTKPKLQDNPRGALEQYITALQSESKMTRKKALLDVNSEIFEKDENSNCDLTVIFPEIYAYILKSFSDASEACREAAAKIISNFIDKLPLNDYYLTYILPVVVRRIGCPEIVEDSEEIRLVLMELVHQILDKYKVTHLLSPFINDFTNILTKTATDPYPKVKLEACECIILLTKVLARDFHFQCESYVKPVISNYGHQHYRVRVAAIKAIVMSGNAKCFELSITPMAEKLFDENPQVRMQVTLEVGNWMLNYRDRYSFWHRMIPLLLTSMSDVMDDIRQTADKFWTDIGLQYMEENEEDLKKKTDFLKDVPSHYPDVKRPNLGCRVLIMSNIGKIVPAISREMDGWQADARLRVSQLLCWLILCAEEGSTQHANTIVKTMMRGAADDDPRVVQEVKRSAELFGYFITPDTWWPLLEAEVDSWPALLVLADVVRGSRADLLAGKVLGEMCGELADPDRCRTRKLKYQTQLLRLSEAILQLCGEACLPVADKLFTINYTVYAMPVDGQIQFMALSNLDKLRYIEKCGRTLTTLYEKHIGRVLADITSDALTWTLLTPDCCLLETTLLHSGAAMGAQLHLIAPLLRECLATPKVDPEVKLKIFTTLSTVLLKRQDNFYKSETDKLEAFLKIVIEEVIMPNLVWCPGRTAEAVRTAAVACLCAALQDNPREDAINDDGGDGDTTAKEVNLFPSKESLEPFLEQIVPLMVGLVDDNSTLTRQHTLRAVCCLATLAARRGCFTADILHKMYFVVLKRLDDSSDKVRSFAVQTTCALFKHRPEPYDTVLFGAHVDAVYSAMLIHLDDVEESFRAEMLGKKLLLTGEKSIECDMCNYRTSQASHLKRHKLTHTGEKPFECDMCIYRAAEASTLKKHKLTHTRASPFECVICDYKASQACDMKIHKLTHIGETPFECDMCNYKAPQASKLKQHKLTHTEEKTYECDMCHYRASRKNHLKRHKLTHTGAKPYECDMCDYRASEKGQLKRHTLTHTGVKPFECDMCDYRAAHASSVKRHRLLHTREKPFECDVCNYRATQASRLKQHLLTHTGEKPYECDMCDYRTSHTTNMKRHKLTHTGEKPFECDICNFRASQASNLKRHRLMHAGEKPFECDICNYRASQASRLKQHKLTHTGAKPYECDMCDYRASLAFSLKQHRLMHTGEKPFECDICNYRTSRASRLKQHKLTHTGTKPYECDMCDYRASLAFSLKQHRLMHTGEKPFECDICNYRTSRASRLKQHKLTHTGTKPYECDMCDYRAAHAFSVKRHRLMHTREKPFECDVCNYRATQASRLKQHLLTHTGEKPYECDMCNYRAAEASTLKNHKFTHTEKKLYECDMCDYRASQKRQLKRHKLTHSGEKRYECDITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -